mRNA_Ecto-sp13_S_contig13452.2750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13452.2750.1
Unique NamemRNA_Ecto-sp13_S_contig13452.2750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: D7G9F7_ECTSI (DA1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F7_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 2.140e-168
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 1 
Query:    1 QWPGGGIGHFSGKRPSGPGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWHHDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV 702
            QWPGGGIG  SGKRPS PGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGR+HFYRHNFFHEVYCPWHHDSSPRCCSCMRLEPMP PPGK GEG FAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGS+KGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV
Sbjct:  171 QWPGGGIGRISGKRPSAPGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRVHFYRHNFFHEVYCPWHHDSSPRCCSCMRLEPMPHPPGKGGEGPFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSEKGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV 404
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A6H5KFR7_9PHAE (DA1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR7_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 1.920e-164
Identity = 225/234 (96.15%), Postives = 228/234 (97.44%), Query Frame = 1 
Query:    1 QWPGGGIGHFSGKRPSGPGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWHHDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV 702
            QWPGGGIGHFSGK PS  GVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWH+DSSPRC SCMRLEPMPQP GK GEGAFAELSDGR+LCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGS+KGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV
Sbjct:  239 QWPGGGIGHFSGKGPSALGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWHNDSSPRCYSCMRLEPMPQPTGKGGEGAFAELSDGRVLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSEKGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV 472
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A6A2WFY7_HIBSY (Protein DA1 n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WFY7_HIBSY)

HSP 1 Score: 112 bits (280), Expect = 1.270e-25
Identity = 71/194 (36.60%), Postives = 101/194 (52.06%), Query Frame = 1 
Query:   52 PGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWH-HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            P    C  C++PI+D  F        FH  C    E   P C+VC+  +P    G I +  H F+ + YCP H HD +PRCCSC R+EP            +  L+DGR LC+ C  +AV+D+ E  P +Q++  F+E  LN+ V  ++   P+L+V+   LNE     +K+G      MP TRGL LSE  T+
Sbjct:   34 PECFCCHACNLPISDYEFSMSG-NYRFHKSCYK--EQYHPKCEVCNHFIPTNAAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPQNM--------GYVPLNDGRKLCLECLDSAVMDTRECQPLYQDIQKFYEG-LNMKVEQQV---PLLLVERQALNEARE-GEKNG---HYHMPETRGLCLSEEQTI 208
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A061FBJ2_THECC (LIM and UIM domain-containing n=4 Tax=Malvaceae TaxID=3629 RepID=A0A061FBJ2_THECC)

HSP 1 Score: 112 bits (281), Expect = 2.900e-25
Identity = 75/212 (35.38%), Postives = 109/212 (51.42%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWH-HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATVMHMAPGAMHFDAKQGRFVVGPRS 696
            C  C++PI+D  F        FH  C    E   P C VC++ +P    G I +  H F+ + YCP H HDS+PRCCSC R+EP         +  +  L+DGR LC+ C  +AV+D+ +  P + ++  F+E  LN+ V  ++   P+L+V+   LNE     +K+G      MP TRGL LSE  TV  +         +Q RF  G R+
Sbjct:  144 CHACNLPISDYEFSMSG-NYRFHKSCYK--ERYHPKCDVCNDFIPTNPAGLIEYRAHPFWIQKYCPSHEHDSTPRCCSCERMEPQ--------DTGYVALNDGRKLCLECLDSAVMDTKQCQPLYLDILEFYEG-LNMKVEQQV---PLLLVERQALNEARE-GEKNG---HYHMPETRGLCLSEEQTVSTIL--------RQPRFGTGNRA 328
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: G7KAS2_MEDTR (Zinc ion-binding protein n=4 Tax=Trifolieae TaxID=163742 RepID=G7KAS2_MEDTR)

HSP 1 Score: 112 bits (280), Expect = 5.460e-25
Identity = 73/189 (38.62%), Postives = 100/189 (52.91%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWHH-DSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            C  C +PITD  F   +    +H  C    E   P C VC   +PA   G I +  H F+ + YCP H  DS+PRCCSC R+EP      K+ +  F  L DGR LC+ C  +A++DS E  P + E+  F+E  LN+ V  ++   P+L+V+   LNE     +K+G      +P TRGL LSE  TV
Sbjct:  185 CHACHLPITDYEFSMSS-NRPYHKSCYR--EKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDSTPRCCSCERMEP------KDSKYLF--LDDGRKLCLECLDSAIMDSHECQPLYHEILEFYEG-LNMKVEQQV---PMLLVERQALNEAME-GEKNG---HHHLPETRGLCLSEEQTV 354
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: UPI001FB14F4B (protein DA1-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14F4B)

HSP 1 Score: 111 bits (278), Expect = 6.990e-25
Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYR-HNFFHEVYCPWH--HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            C  C+ PI+D  F     G  +H  C    E   P C VC + +P   G +  YR H F+ + YCP H  HD +PRCCSC R+EP         +  + +L DGR +C+ C  + ++D+++  P + ++  F+E  L++ V  ++   P+L+V+ P LNE     +KHG      MP TRGL LSE  TV
Sbjct:  141 CHRCNFPISDYEFSISG-GYPYHKSCYK--EHYHPKCDVCKQFIPTNGGGLIEYRAHPFWVQKYCPIHEHHDGTPRCCSCERMEPQ--------DTTYVDLDDGRKICLECLDSVIMDTNQCQPLYIDIQEFYES-LDMKVEQQV---PLLLVERPALNEAMD-GEKHG---HHHMPETRGLCLSEEQTV 311
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A4D9BCP2_SALSN (LIM zinc-binding domain-containing protein n=6 Tax=Salvia TaxID=21880 RepID=A0A4D9BCP2_SALSN)

HSP 1 Score: 111 bits (277), Expect = 1.420e-24
Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWH-HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            C GC  PI+D  F        +H  C    ES  P C +C+  +P    G I +  H F+ + YCP H HD + RCCSC R+E          +  FA L+DGR+LC+ C  +A++D+ E  P F ++  F+E  LN+ V+ ++   P+L+V+   LNE     ++HG      MP TRGL LSE  TV
Sbjct:  198 CNGCRQPISDYEFSMSG-NYPYHKTCYK--ESYHPKCDLCNHFIPTNAAGLIEYRAHPFWSQKYCPSHEHDGTTRCCSCERME--------SWDAKFAALNDGRILCLECLDSAIMDTDECQPLFLDILEFYEG-LNMRVTQQV---PLLLVERQALNEAMD-GERHG---HHHMPETRGLCLSEEQTV 367
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: UPI000D2F2FCB (protein DA1-related 7 isoform X1 n=2 Tax=Medicago truncatula TaxID=3880 RepID=UPI000D2F2FCB)

HSP 1 Score: 110 bits (276), Expect = 3.070e-24
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = 1 
Query:   52 PGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWHH-DSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            P    C  C +PITD  F   +    +H  C    E   P C VC   +PA   G I +  H F+ + YCP H  DS+PRCCSC R+EP      K+ +  F  L DGR LC+ C  +A++DS E  P + E+  F+E  LN+ V  ++   P+L+V+  T+ E     +K+G      +P TRGL LSE  TV
Sbjct:  406 PQCFTCHACHLPITDYEFSMSS-NRPYHKSCYR--EKYHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDSTPRCCSCERMEP------KDSKYLF--LDDGRKLCLECLDSAIMDSHECQPLYHEILEFYEG-LNIKVEPQV---PILLVERQTIKEAIE-GEKNG---HYHLPETRGLCLSEEQTV 580
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A6P6B6I2_DURZI (protein DA1-like isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6B6I2_DURZI)

HSP 1 Score: 110 bits (274), Expect = 3.080e-24
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWH-HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            C  CS+PI+D  F        FH  C    E   P C VC+  +P    G I +  H F+ + YCP H HD +PRCCSC R+E          E     L+DGR LC+ C  +A++D+ +  P +Q++  F+E  LN+ V  ++   P+L+V+   LNE    ++     S   MP TRGL LSE  TV
Sbjct:  162 CHACSLPISDYEFSMSG-NYRFHKSCYK--ERYYPKCDVCNNFIPTNPAGLIEYRAHPFWTQKYCPSHEHDGTPRCCSCERMETQ--------ETGCVALNDGRKLCLECLDSAIMDTKQCHPLYQDIQEFYEG-LNMKVEQQV---PLLLVERQALNEAREGEKN----SHYHMPETRGLCLSEEQTV 331
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BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Match: A0A2I4GQ18_JUGRE (protein DA1-like isoform X1 n=10 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GQ18_JUGRE)

HSP 1 Score: 108 bits (271), Expect = 7.870e-24
Identity = 68/189 (35.98%), Postives = 101/189 (53.44%), Query Frame = 1 
Query:   67 CAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQD-GRIHFYRHNFFHEVYCPWH-HDSSPRCCSCMRLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRGLTLSEVATV 627
            C  C++PI+D  F        +H  C    E+  P C VC   +P    G I +  H F+ + YCP+H HD +PRCCSC R+EP         E  +  L DGR LC+AC ++A++D+ +  P + ++  F+E  LN+ V  ++   P+L+V+   LNE     +K+G      MP TRGL LSE  T+
Sbjct:  160 CRACNLPISDYEFSTSG-SYPYHKSCYR--ENYHPKCDVCKLFIPTNPAGLIEYRAHPFWVQKYCPFHEHDGTPRCCSCERMEPR--------ETRYVALKDGRKLCLACLESAIMDTVDCQPLYIDIQQFYEG-LNMEVEQQI---PLLLVERQALNEARE-GEKNG---HYHMPETRGLCLSEEQTI 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13452.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9F7_ECTSI2.140e-16896.58DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KFR7_9PHAE1.920e-16496.15DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6A2WFY7_HIBSY1.270e-2536.60Protein DA1 n=4 Tax=Hibiscus syriacus TaxID=106335... [more]
A0A061FBJ2_THECC2.900e-2535.38LIM and UIM domain-containing n=4 Tax=Malvaceae Ta... [more]
G7KAS2_MEDTR5.460e-2538.62Zinc ion-binding protein n=4 Tax=Trifolieae TaxID=... [more]
UPI001FB14F4B6.990e-2535.79protein DA1-like n=1 Tax=Impatiens glandulifera Ta... [more]
A0A4D9BCP2_SALSN1.420e-2437.04LIM zinc-binding domain-containing protein n=6 Tax... [more]
UPI000D2F2FCB3.070e-2437.63protein DA1-related 7 isoform X1 n=2 Tax=Medicago ... [more]
A0A6P6B6I2_DURZI3.080e-2436.51protein DA1-like isoform X1 n=3 Tax=Durio zibethin... [more]
A0A2I4GQ18_JUGRE7.870e-2435.98protein DA1-like isoform X1 n=10 Tax=Juglandaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13452contigEcto-sp13_S_contig13452:816..4623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score486.9
Seed ortholog evalue5.4e-135
Seed eggNOG ortholog2880.D7G9F7
Preferred namerga1
Model size702
KEGG koko:K17964
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000131,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000755,GO:0000910,GO:0000917,GO:0003006,GO:0003674,GO:0003824,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006109,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008285,GO:0008360,GO:0009266,GO:0009272,GO:0009409,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0009966,GO:0009968,GO:0009987,GO:0010087,GO:0010088,GO:0010154,GO:0010556,GO:0010646,GO:0010648,GO:0010675,GO:0010962,GO:0010981,GO:0016020,GO:0016043,GO:0016787,GO:0019222,GO:0019538,GO:0019904,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022622,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030029,GO:0030036,GO:0030234,GO:0030427,GO:0030695,GO:0031323,GO:0031326,GO:0031430,GO:0031672,GO:0032182,GO:0032501,GO:0032502,GO:0032505,GO:0032506,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0032952,GO:0032953,GO:0032995,GO:0035023,GO:0035024,GO:0035670,GO:0040008,GO:0042127,GO:0042546,GO:0042995,GO:0043085,GO:0043087,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043292,GO:0043332,GO:0043547,GO:0044085,GO:0044087,GO:0044093,GO:0044238,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045926,GO:0046578,GO:0046580,GO:0046620,GO:0046621,GO:0048316,GO:0048317,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048445,GO:0048467,GO:0048481,GO:0048482,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048638,GO:0048640,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051094,GO:0051128,GO:0051179,GO:0051239,GO:0051240,GO:0051241,GO:0051286,GO:0051301,GO:0051336,GO:0051345,GO:0051641,GO:0051666,GO:0051704,GO:0055120,GO:0060237,GO:0060255,GO:0060589,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0080090,GO:0090036,GO:0090038,GO:0090334,GO:0090529,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0098772,GO:0099080,GO:0099081,GO:0099402,GO:0099512,GO:0120025,GO:0120038,GO:0140096,GO:1900055,GO:1900057,GO:1901564,GO:1902410,GO:1902531,GO:1902532,GO:1903047,GO:1903338,GO:1905392,GO:1905623,GO:2000024,GO:2000026,GO:2000112
Exons6
EggNOG free text desc.actinin binding
EggNOG OGsKOG1703@1,KOG1703@2759
Ec32 ortholog descriptionProtein DA1 like
Ec32 orthologEc-28_000760.1
Cds size702
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13452.2750.1prot_Ecto-sp13_S_contig13452.2750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13452 816..4623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.35428-CDS-Ecto-sp13_S_contig13452:815..9021681462718.35428-CDS-Ecto-sp13_S_contig13452:815..902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 816..902 -
1681462718.3689616-CDS-Ecto-sp13_S_contig13452:2094..21931681462718.3689616-CDS-Ecto-sp13_S_contig13452:2094..2193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 2095..2193 -
1681462718.3795261-CDS-Ecto-sp13_S_contig13452:2839..29591681462718.3795261-CDS-Ecto-sp13_S_contig13452:2839..2959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 2840..2959 -
1681462718.3907366-CDS-Ecto-sp13_S_contig13452:3667..37881681462718.3907366-CDS-Ecto-sp13_S_contig13452:3667..3788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 3668..3788 -
1681462718.3996632-CDS-Ecto-sp13_S_contig13452:3973..40681681462718.3996632-CDS-Ecto-sp13_S_contig13452:3973..4068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 3974..4068 -
1681462718.4095745-CDS-Ecto-sp13_S_contig13452:4443..46231681462718.4095745-CDS-Ecto-sp13_S_contig13452:4443..4623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13452 4444..4623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13452.2750.1

>prot_Ecto-sp13_S_contig13452.2750.1 ID=prot_Ecto-sp13_S_contig13452.2750.1|Name=mRNA_Ecto-sp13_S_contig13452.2750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
QWPGGGIGHFSGKRPSGPGVRICAGCSMPITDAVFRQGAMGESFHMGCMP
GGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWHHDSSPRCCSCM
RLEPMPQPPGKEGEGAFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCT
FFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSDKGMPTTRG
LTLSEVATVMHMAPGAMHFDAKQGRFVVGPRSQV
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mRNA from alignment at Ecto-sp13_S_contig13452:816..4623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13452.2750.1 ID=mRNA_Ecto-sp13_S_contig13452.2750.1|Name=mRNA_Ecto-sp13_S_contig13452.2750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13452:816..4623- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGCCAGGCGGCGGGATCGGTCACTTTTCGGGGAAACGCCCTTCCGG
GCCGGGTGTGCGCATTTGCGCGGGCTGCTCGATGCCGATTACCGACGCCG
TGTTTCGCCAGGGTGCCATGGGGGAGAGTTTCCACATGGGCTGCATGCCG
GGGGGAGAGTCGCCCCTTCCCGCCTGCAAGGTGGGCTGCTGTTAGTATAC
CAGTGGTATCCGTATTAGTAGAAGTATGAGTAGTACTATAAGTAGAACTT
GTTGTTGATGGCGATGTTGTGGCCGACTTTTCCTACGTGGAGAATATCTT
TTTCAACCTAAGGTATCCCATTGGCCCCACGGCATCTACGGAGATTGGCT
TGCTACTTGGAGTCCCAATGTGCGTGATCTTGGTACTAGCAGTGACGGGT
TCGTTGTCGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTATTGCTGTTGTT
GTTGTCGTCCTGGTCATTGTTGTTGTTGTTCTTACTGTCGCATTCGTTGT
TTCTGCCGTTATGCTCTTGAGAAGACCGGTGCCCTTGCTCCCTTAACATG
ATCAGGTGTGCCATGAAAGGCTGCCTGCCCAAGACGGGCGGATCCACTTC
TACCGCCACAACTTTTTCCACGAGGTGTACTGCCCATGGCATCACGACAG
GTGCTGACATTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGAA
ATCCTCCGCAGGTCCCCCCGCCTTCATTGGACAAGCAAGTAAGTGCTGCT
TTTTATGACAAGTCGACACGGTCCTCATCTGCGGTTGTTGTTGCTGTTGT
TGTCCTTCGCGCACATCCTCCCCCTGCTGCCACAGCTCGCCACGGTGCTG
CAGCTGCATGCGGCTGGAGCCCATGCCACAGCCACCAGGAAAAGAAGGGG
AGGGAGCGTTCGCTGAGCTGTCGGACGGCCGAATGCTGTGCATGGCGTGC
GCACAGGTACTTATTGCCTGCTTCCGAACTGGGGGGCGCAGTCATGTAGC
ACGCATGCCGTAGTCATTAGACCGTTGTCCTCGCCTTGCTACAGTGCGGG
GACGGAGATATGTGCCTGGTTTTTCGCGGGCCCAGGCTACGTGACACAGG
GATGAACCAGAAGTTGGCCGTCAACCTTGCGTGGGGGAGGGCGTTAGAGG
TCAACCTAAATAGCGAAAACCGCGCCCATTTCGTTCTGCTTGGAACGCTC
CCTCGGCAGCGCAATTGTTTGTGTCACATGTAAGAGGTACTTCCCCGTCA
TTTGGAAAACGATGTGATCCAAGCGATCAACCCCAAGCCATTCTCCAAGT
CAATCCTGGCAAGGATGCATTCCCTACTGTACAATGCGAAGAGGCCAAAC
TAAAGGTGCGATAATTTCGTTGACCAGAAAAATGAAGTTTTGAGGCGGGG
ATACATGGACTATATTGACCTTTTCTTCGAGGCAGGTGTCCTACCCTCTC
CCGGTTCCGCCGACAACCCGTTAGACAAACAAACATGCTCTGTTTCGCCT
GTGCAGGCATGCGACGCAGTCTCAAGGCTGCATGCCTCTGTCTCGGCTTT
GCAGGCATACGAGACGGTCCTAGTCAAGGCTACGGCCATTGGTGGCAAAT
CATGTACATTCGTGAAGAACCCCCCCCCGGTTTGTATATGTCCTTGCGGC
GATGTGTTTTTCAGACGGCGGTGGTGGACTCCTCCGAAGGGGCCCCGGCG
TTTCAGGAGGTGTGCACCTTTTTCGAGAAGGTGCTGAACTTGCCAGTGTC
CAACGAGATGCGGGGATCTCCGGTCTTGGTTGTGGTGAGTGTTGCCTTTG
GAACTGACATGTCGCCGGCGTCGTATTCGTTGCAGTCGATGTTGATGTTG
ATGATGAAATGAAAAGTGAAACAAAGCGCTATCTCTCTCTCTCTCTCTTT
TATTTTACCACGGTGGCCCAATGACTGCACGTTTTTTTGTCAAGGGGAGG
AAAGGTTAGGGTTCCTAACCCCTTCCGCCTGCACTGATGAGTTTCGCCGC
GGGTGAGATGCGGGGTGTCATGGTAACCTGGTAGAGCTGTTCAACGCGTA
CCAACCACTTGTTCAGCGAAGCGTACAACAACGCAACAAGACCGTAACCA
CTATTGCAACGTTCTAGCAAGAAATACAACAACGGCGACGACGGGCAGCA
GCTGCAGCAGCAGCAGCAGAATCATCATCAGCAGCAGCGGCAACGGCAGA
AACACCGGCAGGTAGCACATGTTAAAATTTACCCGGCTTTCCTCCCCCAA
CCCTCGACTTCTTTCTCTTGCGCTGCCTCTCTCTCCCTGCCTCCCTCCTC
TCCCTTTCTCTCTCTCTCTCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTC
GCTCTCTCTCTCTCTTGTCTCTGTCTTTCTATCTGCCTTCCTATCTGTCT
GTCTCTCTTGGTATCTTCTCTTTCTCGCAGGACTCCCCCACTCTGAACGA
ACAGACTCATCTGGACCAGAAGCACGGGGCCGGTTCGGATAAGGGCATGC
CCACCACGAGAGGTCTAACTCTGTCAGAGGTGGGAATCTGTTATCATAAG
CCTCAAGTGTCTCTGTCTACCTAGGTTCGCTATCGTGCTTTGCACGAGTC
TGGTTGCTGTCGTTGTTGATGATTGTGCTGTTTTTGTCATCAAATTAAGC
TCGTGTTGTTGTGCATGACGATGTTGATGGTGTTGATGGTGTTGATTGTG
TTGTTGTGTTGTTGTTGCATGTCCCAACGGTGAAAAGGGAACGAAGTTTC
CGACTGAAGATGTTGTTGTTGTTGTTGGTGGTGTTGTTGTGGTGGTGGTG
GCGGTGAAGAAATTGTTGTCGTAGTTATCGCATTGCTGTTTCGGACTCAG
GTATGGCACACGATTTGTCCAACAACCCCCCCATTTTTCCTCCCGACACC
CACGCGGCCCAGGCGCCGAAACGGAGGCAAGCTCTCATGTGTAGTAGATC
TCCTGCATTTTCATCCGCGCGATAAGTTGATCACATGTCCACATGGGCAA
CGGAGACGAGAGGCTAGCGCTACCACAGGCGTGGTTATGTTTTGCGACCG
CGCACACGACGCTTACAAAGGGCATGGGGTGCCTTGCGTGGTGAAGGGCA
GGGGGTTTCCTTGTCACCTGGCGGGTGTGACTGCGGGTGCAAGGTCCTGC
ACAGGAGCCGTCCGCAATTTTCGCCTCTCGTTGCGCCGTGCGTTTGTTTT
TTGAAAAAGTTTTGCCTAAAACCTTCCTCATATCCTTTATCTGTTGCTGT
TGGTCAAACAACTTGCGCACGACGCGTCGGCGTCGGCGATTGATTTATTC
GGGAGAACGCAGGGACTACAAGTAGCAACAGCAGTGCAAATAGCTTAGAT
CTGAACCGCGTTCCACGAATGTCATGTTCGCCGGTGCTTTATCTAGGAGG
GCGAAAGCGAGAGCACGTTTCTGGCTCGCTCGCCGACGATCGGTCTAAAA
TTCAAATTTTCGTCATCTCATGTGGTATACCCAAGCGCGACAGACACGTG
TCGTGTTTGCAGCCCATGTGTGTGTGTTCATTGTTACCGTGGACCGCGCT
AACCGGCTGACTAATGAAATTACGTCAGTCTTGTGGGGTTGGAAACACAA
AACACTTCTTGATACCATAACCTGCGACCCCGTGAGGGGGCGGCATGGGG
TGTGTGGGCGTGTGTGTGTGTTTTAATATACTGTACCCTCCCACCTCCGG
CTTGAATTTTAATATTTTTAGGTGGCAACGGTGATGCACATGGCCCCCGG
GGCGATGCACTTCGACGCCAAGCAAGGCCGATTCGTCGTCGGCCCTCGCA
GCCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13452:816..4623-

>mRNA_Ecto-sp13_S_contig13452.2750.1 ID=mRNA_Ecto-sp13_S_contig13452.2750.1|Name=mRNA_Ecto-sp13_S_contig13452.2750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13452:816..4623- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGCCAGGCGGCGGGATCGGTCACTTTTCGGGGAAACGCCCTTCCGG
GCCGGGTGTGCGCATTTGCGCGGGCTGCTCGATGCCGATTACCGACGCCG
TGTTTCGCCAGGGTGCCATGGGGGAGAGTTTCCACATGGGCTGCATGCCG
GGGGGAGAGTCGCCCCTTCCCGCCTGCAAGGTGTGCCATGAAAGGCTGCC
TGCCCAAGACGGGCGGATCCACTTCTACCGCCACAACTTTTTCCACGAGG
TGTACTGCCCATGGCATCACGACAGCTCGCCACGGTGCTGCAGCTGCATG
CGGCTGGAGCCCATGCCACAGCCACCAGGAAAAGAAGGGGAGGGAGCGTT
CGCTGAGCTGTCGGACGGCCGAATGCTGTGCATGGCGTGCGCACAGACGG
CGGTGGTGGACTCCTCCGAAGGGGCCCCGGCGTTTCAGGAGGTGTGCACC
TTTTTCGAGAAGGTGCTGAACTTGCCAGTGTCCAACGAGATGCGGGGATC
TCCGGTCTTGGTTGTGGACTCCCCCACTCTGAACGAACAGACTCATCTGG
ACCAGAAGCACGGGGCCGGTTCGGATAAGGGCATGCCCACCACGAGAGGT
CTAACTCTGTCAGAGGTGGCAACGGTGATGCACATGGCCCCCGGGGCGAT
GCACTTCGACGCCAAGCAAGGCCGATTCGTCGTCGGCCCTCGCAGCCAGG
TG
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