mRNA_Ecto-sp13_S_contig13448.2749.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13448.2749.1
Unique NamemRNA_Ecto-sp13_S_contig13448.2749.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: D8LKI3_ECTSI (Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI3_ECTSI)

HSP 1 Score: 724 bits (1869), Expect = 1.740e-258
Identity = 348/367 (94.82%), Postives = 357/367 (97.28%), Query Frame = 1
Query:    1 MHSLFDFGLDGDLHLPEITILVRTALIACAKLDSRVKTPSTEAIEGLCQMAFNQAGLDDEGALAKHLFESFVSSDAQMTAFLQLWSDSISQAAVSEGTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPGTAGGSAATPGQAAPEQQQEIPRPRVAGWGILAGTTPPLGWVFENIRDRLADGQVLGCSRQAWLRCPWGGGDQQEAADGGMLFPPSNR 1101
            MHSLFDFGLDGDLHLPE+TILVRTALIACAKLDSRV TPSTEAIEGLC+ AFNQAGLDDEGALAKHLFESFVSSD+QMTAFLQLWSDSISQAAV+EGTLWEDPDFPAD SALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIG+LTGRP LLRSLFVPTGQEALGRYCVRLFKEANWINVFVDT IACNA GDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPG AG SAATPGQAAP QQQEIPRPR+AGWGILAGTTPPLGWVFENIR+RL+DGQVLGCSRQAW+RCPWG GDQQEAADGGMLFPPSNR
Sbjct:    1 MHSLFDFGLDGDLHLPEVTILVRTALIACAKLDSRVTTPSTEAIEGLCRTAFNQAGLDDEGALAKHLFESFVSSDSQMTAFLQLWSDSISQAAVTEGTLWEDPDFPADPSALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGILTGRPQLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTRIACNALGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPGAAGASAATPGQAAPGQQQEIPRPRIAGWGILAGTTPPLGWVFENIRNRLSDGQVLGCSRQAWVRCPWGIGDQQEAADGGMLFPPSNR 367          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A6H5K875_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K875_9PHAE)

HSP 1 Score: 473 bits (1218), Expect = 4.750e-159
Identity = 247/342 (72.22%), Postives = 250/342 (73.10%), Query Frame = 1
Query:  232 MTAFLQLWSDSISQAAVSEGTLWEDPDFPADA-------------------------------SALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGD---------------------------------------------------PLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPGTAGGSAATPGQAAPEQQQEIPRPRVAGWGILAGTTPPLGWVFENIRDRLADGQVLGC 1011
            MTAFLQLWSDSISQAAVSEGTLWEDPDFP D                                SALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQ    WLLSAIG+LTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNA GD                                                   PLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQL GRPG AG SAATPGQAAPEQQ+EIPRPRVAGWGILAGTTPPLGWVFENIRDRL+DGQVLGC
Sbjct:    1 MTAFLQLWSDSISQAAVSEGTLWEDPDFPGDPRYLREHMLVFSCLTPSSETIPTYQKLSWGYRSALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQ----WLLSAIGILTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNALGDVRDHDGTRGHRSFAGPAVSARHLDEPRMFNPGHIHARSWIRPPAKEKPLAEPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLSGRPGAAGVSAATPGQAAPEQQREIPRPRVAGWGILAGTTPPLGWVFENIRDRLSDGQVLGC 338          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A482SQB1_9ARCH (Calpain catalytic domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQB1_9ARCH)

HSP 1 Score: 140 bits (353), Expect = 1.390e-33
Identity = 99/290 (34.14%), Postives = 141/290 (48.62%), Query Frame = 1
Query:    7 SLFDFGLDGDLHLPEITILVRTALIACAKLDSRVKTPSTEAIEGLCQMAFNQAGLDDEGALAKHLFESFVSSDAQMTAFLQLWSDSISQAAVSEGTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGE----AVLFV----------------GD-VPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTRE-----ALRDLTGG 798
            SLF+F   G L+  E+T+L+        K+D +   PS   I  LC+ AF  A L     L K    +FVS +  +TAFL+ W    +Q  +  G  W D  FP +  +++     +  G+P  + + W R   V G E    A LF+                G+ V G G +  G LAD+ LL+A+ +LT RP ++++LF  TGQE +GR+CVRL++  +W +V+VD  + C     P F       E W  LLEKA AK  G Y  +    TR       LR LTGG
Sbjct:  107 SLFNFNDKGYLNDSELTLLMMAVTRGAYKIDQKFFPPSVRVIHTLCKEAFKFA-LRKRDELRKPELVNFVSKNVDVTAFLECWRGHAAQVLLPPGLKWRDLTFPCNEMSIAPSPAWLRYGLPTKDFILWRRRDRV-GAELNSLAFLFIHTETFLKTVDRKDVFCGEGVLGTGYIKQGVLADRHLLNALAILTSRPKMIQALFAGTGQEEVGRFCVRLYEAGSWRSVYVDDRVPCAPNLYPAFSTSSSPLEAWVVLLEKAVAKYMGSYGAIAASATRSDGTLTMLRYLTGG 394          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A6S9I198_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I198_HETAK)

HSP 1 Score: 134 bits (337), Expect = 4.220e-31
Identity = 92/266 (34.59%), Postives = 129/266 (48.50%), Query Frame = 1
Query:  289 GTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPS--EVAGGEA--VLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPGTAGGSAATPGQAAPEQQQEIPRPRVAGWGILAGTTPPLGWVFENIRDRLADGQVLGCSRQAWLRCPWGGGDQQEAADG 1074
            G LW D DF  D S+L         G  P +AV W R +  EVAG +A      G  PGD  +V G L + W +SA+ +L  R  LLR++ V     A G Y ++ FK   W+ V VD  + CN  G  LF  G++ +E+W  ++EKAYAK HGCYENL  G   E LRDLTG    K+++   G                 +Q Q+                   G +F+ +++ +A+G ++GCSRQA      G G +Q+   G
Sbjct:   36 GQLWSDKDFLPDGSSLYRDPHKPFRGGMPADAVEWNRINSLEVAGCDAPKTFLDGTEPGD--VVQGALGNCWFVSALSVLASRQMLLRNVIVSDKNAARGIYTLKFFKGGKWVYVHVDDKLPCNRAGKVLFGHGQDPNEVWVSVIEKAYAKLHGCYENLTTGFIDEGLRDLTGVCCMKIKFNSKG---------------VVKQIQD-------------------GSLFQELKEWMAEGSLMGCSRQAGA----GAGTEQDTGRG 261          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: L1J0U9_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J0U9_GUITC)

HSP 1 Score: 132 bits (333), Expect = 3.330e-30
Identity = 76/178 (42.70%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  286 EGTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSE-VAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQ-EALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKL 813
            EG  + DPDFPA AS+L +          P +AV+W+RP + V+ G AV+F G+     P+V G L + W + A+G L GR  LL  L   T    A G Y VR +K   W NV +D  I C+    PL+ R  +  ++W  LLEKAYAK HGCYE L+ G    ALRDLTGG ++ +
Sbjct:  191 EGGKFVDPDFPAAASSLFMDPRKPSRHHIPHDAVKWIRPHQIVSSGGAVVF-GEAA---PLVEGSLGNGWFVGALGCLVGRRDLLEVLIPSTENGRAYGIYTVRYYKYGQWHNVVIDDRIPCDQVNVPLYTRSSDPQQIWPMLLEKAYAKMHGCYEALVTGSVTYALRDLTGGAAQAI 364          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A7S3DFV8_9EUKA (Hypothetical protein n=7 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFV8_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 1.130e-25
Identity = 67/176 (38.07%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  289 GTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQ 816
            G  + DP+FPAD + L         G  P   + + R SE+     +      P D  +V G+L D W L A+  +      LR+LFV T     G Y V+ FK  +WI   +D  I C+  G PL+ R +  +E W  LLEKAYAK HGCYENL+ G    A RDLTGG  + ++
Sbjct:   24 GAHFTDPEFPADETCLFRDPSHPTSGHVPMAYIMFRRVSEICKHPKLFSHDASPMD--IVQGRLDDAWFLGALATVATNKEQLRNLFVSTKYAKYGVYTVKFFKSGSWIQFVIDDLIPCDPAGRPLYSRCKNANETWVMLLEKAYAKLHGCYENLLGGRMPYAFRDLTGGAPQTIK 197          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A7S0HLP1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLP1_9CRYP)

HSP 1 Score: 118 bits (296), Expect = 1.500e-25
Identity = 72/191 (37.70%), Postives = 103/191 (53.93%), Query Frame = 1
Query:  286 EGTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVG-DVPGDGP-----MVP----GQLADQWLLSAIGLLTGRPHLLRSLFV---PTGQEALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQW 819
            E +++ DP  P+ A  L+ +   +       + +RWLRPS+++     + +G + P   P     M P    G L D W + A+ LL  RP L+R LFV       E  G Y VR +K   W+N+ VD  +     G+ LF R ++  ELW  +LEKAYAK HGCYE L  G  + AL+DLTGGV +KL++
Sbjct:   67 ELSIFSDPSNPSAAVQLAALDDKI-------QNIRWLRPSQISYDSLDVKIGAERPKLYPKESQAMFPYVAMGALGDSWFVGALALLASRPELVRQLFVGYTSPSCENCGIYTVRFYKNGKWVNITVDDRLPATLQGNFLFSRSQKGTELWLPVLEKAYAKLHGCYELLFQGSVQYALKDLTGGVPQKLKF 250          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A7S3D4H1_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D4H1_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 4.710e-25
Identity = 71/189 (37.57%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  259 DSISQAAVSEGTLWEDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDV-PGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQ--EALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQ 816
            +SI +   ++   +EDP FPADAS+L   A   P    P E V+WLRP E    E  LFV  V PGD  ++ G L D W L A+  +  +   L++LF    +  +  G   +R +K   W  V +D  I C     PL+ R ++ +E+W  L+EKAYAK H  YE L+ G     L+DLTGGV + ++
Sbjct:  300 ESIIEMCKAKRCKYEDPHFPADASSLFREADKKPSWHMPPERVKWLRPEEFCPEEPKLFVEGVEPGD--VIQGALGDCWFLGALSTVATKQEKLQNLFTNAAKYRKDYGVVTLRFYKNGKWKEVVIDDRIPCMN-NKPLYARCKDPNEIWVLLVEKAYAKLHHSYEQLVAGSLSYGLKDLTGGVPQVIK 485          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: A0A7S3SLM7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SLM7_EMIHU)

HSP 1 Score: 111 bits (277), Expect = 7.300e-25
Identity = 69/174 (39.66%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  304 DPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEV---AGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQE--ALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEK 810
            D DF   A AL L   + PPG PP E VRWLRP+EV   AG  A     D      +V G+L D W LSA+ ++  +P LL  LF        + GR  +    +  W  V +D  + C+A G  L+ R    HE+W  L+EKA+AK HG YE L+ G    A+R LTGG  ++
Sbjct:   32 DEDF-CGARALYLDPASPPPGQPPPETVRWLRPAEVCAEAGWPAPALFVDSSSSSDVVQGRLGDCWFLSALAVVALQPRLLARLFRRWDDPPASAGRCTLVFHHDGAWRPVTIDDRLPCDADGQLLYARSATPHEMWVPLVEKAFAKLHGGYEALVSGFADAAMRQLTGGAPQR 204          
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Match: R1CA79_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CA79_EMIHU)

HSP 1 Score: 112 bits (280), Expect = 9.030e-25
Identity = 73/189 (38.62%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  304 DPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEV---AGGEAVLFVGDVPGDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQE--ALGRYCVRLFKEANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYENLMHGDTREALRDLTGGVSEKLQWQLGGRPGTAGGS 855
            D DF   A AL L   + PPG PP E VRWLRP+EV   AG  A     D      +V G+L D W LSA+ ++  +P LL  LF        + GR  +    +  W  V +D  + C+A G  L+ R    HE+W  L+EKA+AK HG YE L+ G    A+R LTGG  ++       RP  +G S
Sbjct:  112 DHDF-CGARALYLDPASPPPGQPPPETVRWLRPAEVCAEAGWPAPALFVDSSSSSDVVQGRLGDCWFLSALAVVALQPRLLARLFRRWDDPPASAGRCTLVFHHDGAWRPVTIDDRLPCDADGQLLYARSATPHEMWVPLVEKAFAKLHGGYEALVSGFADAAMRQLTGGAPQRRLATARTRPSRSGPS 299          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13448.2749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKI3_ECTSI1.740e-25894.82Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K875_9PHAE4.750e-15972.22Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A482SQB1_9ARCH1.390e-3334.14Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6S9I198_HETAK4.220e-3134.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J0U9_GUITC3.330e-3042.70Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S3DFV8_9EUKA1.130e-2538.07Hypothetical protein n=7 Tax=Palpitomonas bilix Ta... [more]
A0A7S0HLP1_9CRYP1.500e-2537.70Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3D4H1_9EUKA4.710e-2537.57Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S3SLM7_EMIHU7.300e-2539.66Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1CA79_EMIHU9.030e-2538.62Calpain catalytic domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13448contigEcto-sp13_S_contig13448:345..4652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score728.8
Seed ortholog evalue1.3e-207
Seed eggNOG ortholog2880.D8LKI3
Model size1104
KEGG koko:K08574,ko:K08579
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size1104
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13448.2749.1prot_Ecto-sp13_S_contig13448.2749.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13448 345..4652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.2504194-CDS-Ecto-sp13_S_contig13448:344..4351681462718.2504194-CDS-Ecto-sp13_S_contig13448:344..435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 345..435 -
1681462718.2678456-CDS-Ecto-sp13_S_contig13448:801..11541681462718.2678456-CDS-Ecto-sp13_S_contig13448:801..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 802..1154 -
1681462718.2763495-CDS-Ecto-sp13_S_contig13448:1566..17491681462718.2763495-CDS-Ecto-sp13_S_contig13448:1566..1749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 1567..1749 -
1681462718.2846596-CDS-Ecto-sp13_S_contig13448:2153..23011681462718.2846596-CDS-Ecto-sp13_S_contig13448:2153..2301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 2154..2301 -
1681462718.2942455-CDS-Ecto-sp13_S_contig13448:2659..27511681462718.2942455-CDS-Ecto-sp13_S_contig13448:2659..2751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 2660..2751 -
1681462718.3030915-CDS-Ecto-sp13_S_contig13448:3175..32501681462718.3030915-CDS-Ecto-sp13_S_contig13448:3175..3250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 3176..3250 -
1681462718.311995-CDS-Ecto-sp13_S_contig13448:3935..40041681462718.311995-CDS-Ecto-sp13_S_contig13448:3935..4004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 3936..4004 -
1681462718.3210711-CDS-Ecto-sp13_S_contig13448:4559..46521681462718.3210711-CDS-Ecto-sp13_S_contig13448:4559..4652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13448 4560..4652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13448.2749.1

>prot_Ecto-sp13_S_contig13448.2749.1 ID=prot_Ecto-sp13_S_contig13448.2749.1|Name=mRNA_Ecto-sp13_S_contig13448.2749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=368bp
MHSLFDFGLDGDLHLPEITILVRTALIACAKLDSRVKTPSTEAIEGLCQM
AFNQAGLDDEGALAKHLFESFVSSDAQMTAFLQLWSDSISQAAVSEGTLW
EDPDFPADASALSLVAGTVPPGIPPGEAVRWLRPSEVAGGEAVLFVGDVP
GDGPMVPGQLADQWLLSAIGLLTGRPHLLRSLFVPTGQEALGRYCVRLFK
EANWINVFVDTCIACNAFGDPLFCRGEERHELWGFLLEKAYAKAHGCYEN
LMHGDTREALRDLTGGVSEKLQWQLGGRPGTAGGSAATPGQAAPEQQQEI
PRPRVAGWGILAGTTPPLGWVFENIRDRLADGQVLGCSRQAWLRCPWGGG
DQQEAADGGMLFPPSNR*
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mRNA from alignment at Ecto-sp13_S_contig13448:345..4652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13448.2749.1 ID=mRNA_Ecto-sp13_S_contig13448.2749.1|Name=mRNA_Ecto-sp13_S_contig13448.2749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13448:345..4652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCTTGTTCGACTTTGGCTTGGACGGGGACCTGCACCTCCCCGA GATCACTATTCTCGTGAGAACGGCCCTTATCGCCTGCGCAAAGGTTCGTA AATTGATTGATGTTGGGTTGATTTTTTGCAGATAATCGAGGGTGTTTTCT GGAGAGATTGGAGAAATAAATAGAGCCGCTACGCACCAGTTGGCATTTGC GTATGTGTGTTGGTGAAAGAGACTCCTTTACATACACAAAAATGTGCACT ACATATATTGTATATGTAGCTTCCGGCGTGACCATTTGATTCTTGGGTCG GGTTTTCTCTGTGTGAACCCAACTGAATGCGAAGCACGAACTTTGGCCAT AGTCGTTTAGGTGGTAGACTACTCTTGATGTTGCCGAATCCTTGATGCCG AGGGTGACGCAGTTGGCATCGGTTTTGCACGCACAGTTTTCCGTACACGG TAGTGCTGTAGCCTTGCTGAATGGTGGAGCTCTGCTCACGATGCTTGTGC TTGGAGCAATAGGCATCGTACCGTTGCCGGATTGAAACCTTCCACCGACG GCGTGGTTTCCCTCTTTCATGCCTCTAAGCAGTTCTCCCGGACGAAGCTA ATGGTGCCCTTGCTGGTACCACATGTGCTCGTCGTTTCCTCTTACAAGCT TGATTCTAGGGTGAAGACTCCGTCGACAGAGGCAATAGAGGGGCTCTGTC AAATGGCCTTCAACCAGGTACGCAATTTCGAATGAGTGCATGTATGATGA CCACGTCAACGAATGCACTGCCCTCTTGCGCGAGCTGCCCTCCGTTGAAG GAGTTGTCGTGCCAGGGTGTTGCCGTCATGCGTAGACCTCCCTTGATCAC AACCGAGATATCACCAAATGGCAACTTGAGACTCTTTGACAGTATGTACA TGTCATGGTGACGTGTGTGTCTTTAACCTTGCTATTTCGTGCCACCCATC GCAATGGCCTCCTGCTCATATGCTTTGACTGGATACCCAGCTGTAGATGC GCTAGCTACACAAGCCTTTGACGAGGATTGTGCAGGTTCCGTATGCGAAA TAAGAAAAAAATACTTGAAGAGGATTTGACCTTCCTATTGGTGCAAGCTC TCAGTACGTGAACGGAAGGCAAAGCGACTACCTCGCCGCGTTGTTGCGGT ATACGCTGTGTAATACCGGAGAAAAGCATGTGCTTCTCAGCGCTGATCAA GTGGTTTTCTACCGTCGACAACTAACTCCGTTCCACACTTCCCCGCTACT ACTGTTTTCAGCGTTTGTTTCGGCTCCAAATACCCTTGATTTTCAACTTC ATTCAGTCGATTTACTCCAAGGGCCTCGAGATGTTCCCCACACTCTGCGT GCTGCAGCACTCTCCCCCCCTCCCCACTCGCCCCTACTTCGTTGTTTTCA AGGCCGGTCTTGACGACGAGGGCGCGCTAGCAAAGCATCTGTTCGAATCA TTTGTGTCCAGCGACGCGCAGATGACGGTACGTTCAGAAAGTTCTCCTTT GGTCGGTACCTCTATAGCTATGCCACGGCCAGAGACTAGGTCGTGGTTAT CCTCTACGTGTGTTTTCTCTCCGCACTTGAGCCGGAACCAGTGGAGGGCC ATGTAGATTTCTCCCTTGAACAACTTACGAATGGAACAGAATCAACATAC ATGCCTGTTGTACATCGCTAAAGAGCGATCACATGATTGGCGTGGGCTCA TCGCTTGCCTACAAGAGAAGGGTCGTTTGCCAGAAATGAGATCACGGGGA CGAAGTTGTCTTTTCCCGGGCTTTAGCGGAATCTCCGTGAAAGGAGATGC CCTGATTCTCGACTCTTTAGAATCTTCTGAAAACTTAGTTCGAATTTAGC ACGAACAGCAGCAACGATGATGACAACGCTGCCCACCCCTTGCAAAACCA GGCCTTCCTTCAGCTATGGTCAGACAGCATAAGCCAGGCGGCCGTATCGG AGGGAACTCTTTGGGAAGACCCCGACTTTCCGGCCGACGCAAGGTGGGTA CGACGGCAGTGTCGGCGTCCTTGCAGCGCTCTCTCTCACATTATTGTGGT ACATCGCTCTCACTGTACACGCAACTCGATCGGGCTATCGGTTTGTTCGA GGACGTTCGTCACATTTCTGCAACAACTCTCGTTTGAAAGGGCATGCGCG CCCTTGACTGAGCCTCTCGACAAATGAGGACAAAGGTCTCCTGAAAACGA CAATGCAGTGAGTAGACTTGCGACTGGGAGGCCGACAGGACATGTGCTGT TTCCAAGGTACTTCCGAGAGCACATGCTCGTTTTTTCCTGTCTAACCCCA AGCTCCGAAACCGTTCACCACCTACCAAATACTATCCTGCGGACACCGAA GCGCTCTCAGCCTCGTGGCTGGAACAGTGCCGCCGGGTATACCTCCTGGA GAGGCCGTGCGATGGTTGCGACCGTCGGAAGTTGCGGGAGGCGAGGCGGT GCTTTTTGTCGGGGACGTACCTGGGGACGGTCCCATGGTACCAGGGCAGG TGTGCCACCTAGTCTATTGAGGGAACACGTGCCTATTGAAGTCGCACGAA GAGCTCATCTAGAGGTTTTGAGAGCAGGATCGCAGCTTTTCCTGCGCCGT GCCCCCGCGTTTCTATTTCCCGTTGTTCCTCCTACCGCCTTCCTCAGTTT CTCGTAGGAAGTGGTGCCTCTACATCTAACGTATTAATCACACTGGTACA ACACAAGGAGAAAAAAAGTCGTACATCCTGGCAATCGCACACAGCGACAA CAACGGCGGCGACAAGTATAACAACAACCTCAACCAGAAAAGAGTAAGTG GAAGCAACTGCAACCACAATTTATTTGCCAGCAACACACCACCACCAGCA ACAACAACCGCAAAACACCAGAAACGCTCTTGTTTCGCCAACAAAATACC AAGTTGGCCGACCAGTGGCTGCTGTCGGCGATAGGCCTCCTCACCGGACG CCCGCATCTGCTGAGATCGCTGTTCGTGCCCACGGGGCAAGAGGCGCTCG GTCGCTACTGTGTCCGCCTCTTCAAGGAAGCCAACTGGATCAACGTGTTC GTCGACACCTGCATCGCGTGCAACGCTTTTGGAGATGTGAGAGATCATGA CGGTACAAGGGGACAAAGATCGTTTGCCGGTCCAGTAGTCAGCGCTCGGC ACCTAGGCGAGCCGAGAATATATAACCTTTCGCACATCCACGCGTGCAGC GGGATCCGGCCCCCGGCGGAAGAAAAACCCCTCGCCGAGGTTTCGGGGGG AAACATGACGCTTCTAGTTGGGTTAGACACAACCGCAGATCTCACTTGCT ACTCTTGTGGTCATTGCAAGTGTGACATGGGGTCGTGCGGGTACACCCAG TCAACCACACCCCCTGCTCGATTCCCCCCCGCGCGACCATGGGATATTTG TTGCGTATCGTCTGCTTGCGTCCGTCTTTTCTTGCGTGTGTTCCCCCACA ACATTCCAAAACAACGTTTTCTACGAACACCAAAACGGACACAAAAAGCC TCTCTTCTGCCGCGGGGAAGAGCGGCACGAGCTGTGGGGTTTCCTGCTGG AGAAGGCTTACGCCAAAGCTCACGGCTGCTACGAGAACCTCATGCACGGA GACACGCGCGAAGCGCTCCGAGACCTGACGGGGGGAGTCTCCGAGAAGCT CCAGTGGCAGCTGGGCGGGCGGCCTGGTACTGCCGGTGGTTCGGCCGCGA CGCCAGGCCAGGCGGCGCCGGAGCAGCAGCAGGAGATCCCGCGCCCACGA GTTGCCGGGTGGGGCATCCTGGCGGGCACGACACCGCCGTTGGGCTGGGT TTTCGAAAACATCAGGGACAGGCTTGCGGATGGGCAGGTTCTCGGTTGCA GGTCCGTATTGGCTTCTTGCTCTTATGAGCAGGTGGCTTTCATGCCCCGA AATTTCATGCAGGGTCGCGGTGGACGCCACCATTTGGGGGAGGGCGATGA AATCGGCGCAAAATAAGCTCTGGTCGGGGATGATAATCTTTTTCAGGTTA TCACCGTTGGGGAAGAAGCATCATCTCACATGCAGAGTCAGCAACTACAG TTGCTACTGGCGAAGGGGCTGCCGAGTTATTTCATTCACCTCCTTTTCCG CCGTGCGTCTCCACCTGGCGCTAGCCCATACGCGTGCACAATGGCTCGTT CATTTCATTGGTCAGCCCCACGTGTGCTACCTCGGCGATTCGTTCTTGCG CTTCCGCGCCCCAACAGCCGCCAGGCTTGGCTAAGATGTCCATGGGGCGG CGGTGACCAGCAGGAGGCCGCGGACGGTGGTATGCTCTTTCCGCCTTCGA ACAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13448:345..4652-

>mRNA_Ecto-sp13_S_contig13448.2749.1 ID=mRNA_Ecto-sp13_S_contig13448.2749.1|Name=mRNA_Ecto-sp13_S_contig13448.2749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13448:345..4652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCTTGTTCGACTTTGGCTTGGACGGGGACCTGCACCTCCCCGA
GATCACTATTCTCGTGAGAACGGCCCTTATCGCCTGCGCAAAGCTTGATT
CTAGGGTGAAGACTCCGTCGACAGAGGCAATAGAGGGGCTCTGTCAAATG
GCCTTCAACCAGGCCGGTCTTGACGACGAGGGCGCGCTAGCAAAGCATCT
GTTCGAATCATTTGTGTCCAGCGACGCGCAGATGACGGCCTTCCTTCAGC
TATGGTCAGACAGCATAAGCCAGGCGGCCGTATCGGAGGGAACTCTTTGG
GAAGACCCCGACTTTCCGGCCGACGCAAGCGCTCTCAGCCTCGTGGCTGG
AACAGTGCCGCCGGGTATACCTCCTGGAGAGGCCGTGCGATGGTTGCGAC
CGTCGGAAGTTGCGGGAGGCGAGGCGGTGCTTTTTGTCGGGGACGTACCT
GGGGACGGTCCCATGGTACCAGGGCAGTTGGCCGACCAGTGGCTGCTGTC
GGCGATAGGCCTCCTCACCGGACGCCCGCATCTGCTGAGATCGCTGTTCG
TGCCCACGGGGCAAGAGGCGCTCGGTCGCTACTGTGTCCGCCTCTTCAAG
GAAGCCAACTGGATCAACGTGTTCGTCGACACCTGCATCGCGTGCAACGC
TTTTGGAGATCCTCTCTTCTGCCGCGGGGAAGAGCGGCACGAGCTGTGGG
GTTTCCTGCTGGAGAAGGCTTACGCCAAAGCTCACGGCTGCTACGAGAAC
CTCATGCACGGAGACACGCGCGAAGCGCTCCGAGACCTGACGGGGGGAGT
CTCCGAGAAGCTCCAGTGGCAGCTGGGCGGGCGGCCTGGTACTGCCGGTG
GTTCGGCCGCGACGCCAGGCCAGGCGGCGCCGGAGCAGCAGCAGGAGATC
CCGCGCCCACGAGTTGCCGGGTGGGGCATCCTGGCGGGCACGACACCGCC
GTTGGGCTGGGTTTTCGAAAACATCAGGGACAGGCTTGCGGATGGGCAGG
TTCTCGGTTGCAGCCGCCAGGCTTGGCTAAGATGTCCATGGGGCGGCGGT
GACCAGCAGGAGGCCGCGGACGGTGGTATGCTCTTTCCGCCTTCGAACAG
GTAG
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