mRNA_Ecto-sp13_S_contig13444.2746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13444.2746.1
Unique NamemRNA_Ecto-sp13_S_contig13444.2746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13444.2746.1 vs. uniprot
Match: D7FJU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU0_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.320e-87
Identity = 129/145 (88.97%), Postives = 134/145 (92.41%), Query Frame = 1 
Query:    1 VDRLPLRPVFTTMNNQDRPPAIQELAIRQFLVHLVLRFCKAWFMARVRVGQNAAGSAHCLDAARAFLAFASFAFFVFVHAIYLGIYVLEYYGVIDREHCDNLLRRVEERWLVCNFFLSGPGPMWASWSRRVWAILLGETAESDDD 435
            +DRLPLRPV TTMNNQ+RPPAIQELAIRQF VHLVLRFCKAWFMARVR  Q A+ +AHCLDAARAFLAFASFAFFVFVHA+YLGIYVLEY GVIDREHCDNLLRRVEER LVCNFFLS  GPMWASWSRRVWAILLGET ESDDD
Sbjct:    1 MDRLPLRPVLTTMNNQERPPAIQELAIRQFAVHLVLRFCKAWFMARVRFDQKASENAHCLDAARAFLAFASFAFFVFVHAVYLGIYVLEYDGVIDREHCDNLLRRVEERCLVCNFFLSRQGPMWASWSRRVWAILLGETTESDDD 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13444.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJU0_ECTSI1.320e-8788.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13444contigEcto-sp13_S_contig13444:1140..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size450
Hectar predicted targeting categorysignal anchor
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.0986342-CDS-Ecto-sp13_S_contig13444:1139..15891681462718.0986342-CDS-Ecto-sp13_S_contig13444:1139..1589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13444 1140..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13444.2746.1prot_Ecto-sp13_S_contig13444.2746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13444 1140..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13444.2746.1

>prot_Ecto-sp13_S_contig13444.2746.1 ID=prot_Ecto-sp13_S_contig13444.2746.1|Name=mRNA_Ecto-sp13_S_contig13444.2746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
VDRLPLRPVFTTMNNQDRPPAIQELAIRQFLVHLVLRFCKAWFMARVRVG
QNAAGSAHCLDAARAFLAFASFAFFVFVHAIYLGIYVLEYYGVIDREHCD
NLLRRVEERWLVCNFFLSGPGPMWASWSRRVWAILLGETAESDDDDDQM*
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mRNA from alignment at Ecto-sp13_S_contig13444:1140..1589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13444.2746.1 ID=mRNA_Ecto-sp13_S_contig13444.2746.1|Name=mRNA_Ecto-sp13_S_contig13444.2746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13444:1140..1589+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGATCGGCTGCCGCTCCGACCGGTCTTTACTACCATGAACAACCAAGA
TCGACCCCCAGCAATCCAAGAACTCGCCATCCGCCAGTTCTTGGTCCACC
TAGTCCTAAGATTTTGTAAGGCCTGGTTCATGGCGAGAGTTCGCGTCGGC
CAAAACGCAGCCGGAAGCGCTCACTGCCTTGATGCTGCAAGGGCCTTCTT
AGCTTTCGCCTCGTTCGCATTCTTCGTGTTCGTGCACGCCATTTACCTCG
GCATCTACGTGCTGGAGTACTACGGAGTCATCGATCGCGAACACTGCGAC
AACTTGCTCAGGCGTGTAGAAGAACGGTGGCTCGTCTGCAACTTCTTCTT
GTCCGGGCCGGGTCCGATGTGGGCATCATGGTCGAGGAGGGTCTGGGCAA
TTCTGCTGGGTGAAACGGCAGAATCTGATGATGATGATGATCAGATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13444:1140..1589+

>mRNA_Ecto-sp13_S_contig13444.2746.1 ID=mRNA_Ecto-sp13_S_contig13444.2746.1|Name=mRNA_Ecto-sp13_S_contig13444.2746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13444:1140..1589+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGATCGGCTGCCGCTCCGACCGGTCTTTACTACCATGAACAACCAAGA
TCGACCCCCAGCAATCCAAGAACTCGCCATCCGCCAGTTCTTGGTCCACC
TAGTCCTAAGATTTTGTAAGGCCTGGTTCATGGCGAGAGTTCGCGTCGGC
CAAAACGCAGCCGGAAGCGCTCACTGCCTTGATGCTGCAAGGGCCTTCTT
AGCTTTCGCCTCGTTCGCATTCTTCGTGTTCGTGCACGCCATTTACCTCG
GCATCTACGTGCTGGAGTACTACGGAGTCATCGATCGCGAACACTGCGAC
AACTTGCTCAGGCGTGTAGAAGAACGGTGGCTCGTCTGCAACTTCTTCTT
GTCCGGGCCGGGTCCGATGTGGGCATCATGGTCGAGGAGGGTCTGGGCAA
TTCTGCTGGGTGAAACGGCAGAATCTGATGATGATGATGATCAGATGTAG
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