mRNA_Ecto-sp13_S_contig13442.2745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13442.2745.1
Unique NamemRNA_Ecto-sp13_S_contig13442.2745.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 9.270e-149
Identity = 214/234 (91.45%), Postives = 217/234 (92.74%), Query Frame = 1
Query:    1 RRRPDLRQIGLQTAAAVVLQQDEVVDVAEVQPEAEGDTVGEASGEEFMNLAESFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAGSGKADGEGXXXXXXXXXXXEGEVVAS 702
            RRRPDLRQIGLQTAAAVV+QQDEVVDVAE Q  AEGDT+GE SGEEFMNLAESFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNL+RKGGSLKKTSMSEL WDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAG GKADGEG           EGEVVAS
Sbjct:  102 RRRPDLRQIGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEEFMNLAESFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAGPGKADGEGGGSEDADDGSSEGEVVAS 335          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.310e-28
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  307 FIFVQHFVRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKR-LEKMAANVAGSGKADGE 645
            F+ VQ F+   +RKG S+++    EL W+++VTE EH+ EL AY CE+CGYTLFPAR RH+ FF++V+D+ CPEC A +S F D +D  DP N  R  E++ A +A   KA+ E
Sbjct:   12 FVIVQFFI-TWVRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPARNRHKKFFEDVKDYTCPECGAAKSEFVDIHDLTDPRNIDRPREELEAALAAKIKAEAE 124          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 1.370e-15
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  271 KTYGFWTWQVFGFIFVQHFVRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRL 597
            KT   WT  +F  + V+  VR  +   G+L+     E N+ +I        EL  +CCE CGYT+FPARGR   FF +   FKCP CD+P+ SFFD  D +DP   + L
Sbjct:  121 KTSFLWTGIIFTLLIVK-IVR--MAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARGREGKFFPDA--FKCPNCDSPKESFFDMTDLSDPRTIEAL 224          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A7J7IMV8_9RHOD (Rubredoxin-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMV8_9RHOD)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-13
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  292 WQVFG-FIFVQHFVRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEK 603
            W + G FI   + +R L+R+    KK     +  +    E +   EL  Y C +CGYTL+PARGR   FF +   FKCP+C AP+S F+D ND NDP NQ+  E+
Sbjct:  142 WFLMGIFIVFLNVLRRLVRR----KKAENVPIGSEKYRAESDE--ELHVYRCGQCGYTLYPARGRELKFFPKT--FKCPQCSAPKSEFWDLNDPNDPRNQETDEE 238          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A8J6CCP8_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCP8_DIALT)

HSP 1 Score: 74.3 bits (181), Expect = 1.280e-12
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  424 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANV 618
            ELKA+ CE CGY L+PARGR   FF +   FKCP C +P+ SF+D ND NDP N +  ++  A+ 
Sbjct:  144 ELKAFKCENCGYELYPARGREGKFFPDT--FKCPMCKSPKESFYDMNDANDPRNWEEDDENGADA 206          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A0G4GWS9_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWS9_VITBC)

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  328 VRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAA 612
            V NL+ + G+ K+T         I+   E   EL  + CE CGYT+FPARGR   FF +  DF+CP C A +  F+D ND +DPHN+   E  +A
Sbjct:  114 VLNLVTRSGA-KRTKA-------IIKTEEDAKELHRFTCENCGYTIFPARGREGKFFGD--DFECPVCGAKKEHFYDGNDPDDPHNKAPEEGESA 198          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A7S1U8S4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.740e-9
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  379 ELNWDHIVTEPEHLLE--LKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAG 624
            E NWD    +    +E  L  + CE+CG+T++PARGR   FF +   F CP C A + SF+D ND  DP NQ+      A   G
Sbjct:  134 EPNWDAAELQATGEVEDVLHMFRCEDCGFTIYPARGREGKFFPKG--FTCPNCSASQESFYDLNDPTDPRNQEEXXXXDAGPPG 215          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: M1VCH9_CYAM1 (Rubredoxin-like domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VCH9_CYAM1)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-8
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  424 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDAND 567
            EL  Y C +CGYTL+PARGR   FF     FKCP+C AP+S F+D ND
Sbjct:  182 ELHVYRCGKCGYTLYPARGRELKFFPRT--FKCPQCSAPKSEFWDLND 227          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A7S0E573_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E573_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 9.710e-8
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1
Query:  412 EHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKM 606
            E   EL  + CE+CG+TLFPARGR   FF +   F+CP C+A +  FFD  D  D   ++ LE M
Sbjct:  148 EEEAELHEFVCEDCGFTLFPARGREGKFFSDS--FRCPTCNAAKEKFFDLTDVTD---ERSLEYM 207          
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Match: A0A7V5I7Z1_9BACT (Rubredoxin-like domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I7Z1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.410e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  442 CEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDK 570
            C+ CGYTLFPA GR   F+ +  DFKCP+C AP+S F D +++
Sbjct:  539 CQRCGYTLFPAAGREWKFYGD--DFKCPQCGAPKSDFRDTSEQ 579          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13442.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FMS9_ECTSI9.270e-14991.45Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA1.310e-2849.12Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2D095_9EUKA1.370e-1541.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7J7IMV8_9RHOD2.550e-1341.90Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A8J6CCP8_DIALT1.280e-1250.77Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A0G4GWS9_VITBC1.700e-1242.11Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S1U8S4_9STRA1.740e-940.48Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
M1VCH9_CYAM11.300e-858.33Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S0E573_9EUKA9.710e-846.15Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7V5I7Z1_9BACT1.410e-553.49Rubredoxin-like domain-containing protein n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13442contigEcto-sp13_S_contig13442:1..4720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score432.6
Seed ortholog evalue1.2e-118
Seed eggNOG ortholog2880.D7FMS9
Model size702
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CZ9B@1,2S968@2759
Cds size702
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13442.2745.1prot_Ecto-sp13_S_contig13442.2745.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13442 1..4720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.01901-CDS-Ecto-sp13_S_contig13442:0..1111681462718.01901-CDS-Ecto-sp13_S_contig13442:0..111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 1..111 -
1681462718.0297985-CDS-Ecto-sp13_S_contig13442:552..6651681462718.0297985-CDS-Ecto-sp13_S_contig13442:552..665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 553..665 -
1681462718.0402048-CDS-Ecto-sp13_S_contig13442:1203..13331681462718.0402048-CDS-Ecto-sp13_S_contig13442:1203..1333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 1204..1333 -
1681462718.048886-CDS-Ecto-sp13_S_contig13442:2287..23861681462718.048886-CDS-Ecto-sp13_S_contig13442:2287..2386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 2288..2386 -
1681462718.0579464-CDS-Ecto-sp13_S_contig13442:2994..32071681462718.0579464-CDS-Ecto-sp13_S_contig13442:2994..3207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 2995..3207 -
1681462718.0674248-CDS-Ecto-sp13_S_contig13442:4684..47201681462718.0674248-CDS-Ecto-sp13_S_contig13442:4684..4720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13442 4685..4720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13442.2745.1

>prot_Ecto-sp13_S_contig13442.2745.1 ID=prot_Ecto-sp13_S_contig13442.2745.1|Name=mRNA_Ecto-sp13_S_contig13442.2745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
RRRPDLRQIGLQTAAAVVLQQDEVVDVAEVQPEAEGDTVGEASGEEFMNL
AESFDASQRLVEESMMDPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQV
FGFIFVQHFVRNLIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEE
CGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLE
KMAANVAGSGKADGEGGGSEDADGGSSEGEVVAS
back to top

mRNA from alignment at Ecto-sp13_S_contig13442:1..4720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13442.2745.1 ID=mRNA_Ecto-sp13_S_contig13442.2745.1|Name=mRNA_Ecto-sp13_S_contig13442.2745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13442:1..4720- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGACGGCCGGACTTGCGCCAGATAGGCCTGCAGGTGTGTGCCGAGAG CGTCGAGTGTGTCGAGTGACCTTGTACAATGGGGATGCTACCCCCCGTGG TGTACTTTGATGCCGCAAAAGCGAGTGGTAGGCCACGCGACAGCCAAGCC GTATGGTATCCCGAACACACGCAGGAGAAAGTACCTTGGGCTGCACCCTC GACATGCAGTGGCGGCTACATGTACGATTTAAGAGATGGTCGTGACACTA TTTCTCTCTTTGATCCAGTTTTCTCCTCAACCGCACTGTGACATGTAAGT ATTTCTCATGGCCGTGTTAAGGCAGCTTGAATCTCTTAAATCGTTAATTT TTCTTAAATAGTCTCTCAAGCCGTAGCCGCGACTGTACATGGGCTACGGA ATAACATTGATGTTGCGGAGACAGACCGGTTGGAGTTGCATGTTTTTCTC TCCTGCTTGTCTTTTCTTTCCGGTGATGGTGCGACTACCCCGACCAGGCC ACGCTGCCGCGGTCTCTCATGAATGATAATGATCACAAAGGGGTCACCCA TGATGCGCGGTTGTGTGAGTTTTTATCAAGTCGTCACGATGAATGATAAT GATCACAACCGGCTCACCCATGATATAGGTTTTGTGATTTTTTATCAAGT CCTCACGGGCAACCGGCCAGCCTCTGCAAGTACTGACTGCTGTATCTATG CTTGCGTGCGTGCGTGTGTGCGTATGTCTTTTTGTGCTACTGTAGCATCG ACCGCGCTAACCGACTGACCAACGAAAATACGACGTTCTCTGTGCGGCTA AAACAGAACATTCTCCTAATGGCTATGGCATGGGAGCCATTGATGGGGCT TCATCGCAGGGGCTAGGGGTCTTCACCGGATTATAGACAGAAAAAACGGT ATCATATAAATGGCAAACGAAGAAAAATTGTGCATGAGTTTTCCCCTATC TACTCTGGGTGCCAGTTTTCATCATTTGCACCTTCTTGTATGGTGCGTCT GAGGCACCAGCCGTGGTCACCAAGGACAGGAGGGTAAAAACCATTCCATA TGTTTTTGATGTTCTTGTTGTTGTTGTTCGTGGTGGTGGTGGAGAGTCCA AGCTGGGTACAAGACTTGATGGCAAGTTGAGGGTGTCGTATCGTACAGCG CCTTGTTCGCTGACTTTCACTCGCGGTGGTTAAATAGCCCTTTTGGCTCC GACCCTGGCCCTGATTCTAGCCCTATAAATAGCCCTGACTGAGTGACTCG AGAGCCCCAACGCTATCCCATCGCGGAGGCCAGCAGCAGCGGTTGCATGA CAAGTCGGGGGCAAGCGTCATGACGTTACCAACCCTGTTTCCCTAATAAA TTTAACCATAACCCTGGTCACCCCAATAAAACCCAAACAACAAACCTATT TATTCGATCTGAAACCAAATTACCCTAGTAGTGAAAGCCCTTATCAATAA AACCCCAACGACGTTATGTTTACTTTCTAAAAACCCTAACAATGCCTCAA TGACCAACCCCAGACCGCAGCGGCAGTGGTGTTACAGCAAGACGAAGTCG TCGATGTTGCCGAGGTACAACCGGAGGCGGAAGGTGACACCGTCGGGGAG GCATCGGGGGAGGAGTTTATGAACCTGGCGGAGAGTTTCGACGCCTCTCA ACGCCTGGTGGAGGAATCCATGATGGACCCGCAAACCGGGACGATCCAGG ATCAGTACACCAAGTTGTACATGCCGGTGAGTTATATGTAGTCTACTTTG TTGGCTAAATATAGGAATGAAGCATCCAGGATGGCTGACACCGCCGAAGC TAGGATGTCAATGTTAGTATGTTAACGGGGTTGCAACCGCACCCAGGATA GCTGGACCACCTATGCTAGGATATCAATGCTAGTATGTCAGGGGGGGGTT GCAACCGGAGCCGGTAATGCCTATTAGTACATTGTTACTAGGGTTAGGTC AAGGCTAGTGGGTAGTGGTGGTTATGGCTTGATGGAATCAGAGGCAGGAA AACACAACGCAGAGAAGTGTGTGCAAGTAACAAACAATGCCAGTTTATAT TTCCTGTGTGGCGCACATCGAATTGCGTCTAGCTAGTATACAGCAGCAGT GGCCCCGAATTTGGCAGGACCAGCAGGTGGCCTTTATCGACACCAATAGC TCGAAAAATATTGTGCTGGTCTGCTGTCCGTTCTTCATCGTGTCGTGTAC TTGATGACTCCGTGCCCCGTCATTCATAGTAGCTGGTGTTGTCCGATGGT TTCCTGTCCGTTGCCACCGTTCCTGCTGTGCAACCATCATCATCCTCATT CATCCTCATCACGGTCACGCTCTGCTGAATTCAGATGGATGGCCTGGTGA TCAAGAAGACCTACGGGTTCTGGACGTGGCAGGTGTTCGGCTTCATCTTC GTGCAGCACTTCGTGAGAAACCTCATCCGCAAGGTAAGCATAATCTTCCT GTCGTGCGCTTACAGCGTGACTTAGCTCAATTGCTGTCCTTGATGGCAAT AGTTTGCTGTGATTTTCATCGTGCTTTAGATGAGTGCAGCGGTCGTGTGT ACTCCAAACATGGGAACGGCTCTTCCGTAGATTTTGGTTGCTCGATACAG TATAAGGAAACTCGTCATGGTCTTGACAGAATGTCCTTGAAGCGAGAAGT CTCGGTGATGTGTTTTGTCCTTAATGAAGCAATGAACGACTGCTGTGCCT ACAGCAAGAGAGCCGGTTTTTGGAGTACCGGTTATGTCTATCTCTCTTTG CGAGGCGCTCACGGTTCTCAGGTTTGGGCATTCATTCCAAGGAGAGAGGA ATACTTCTAATTTACGAAAATTAGAACAAATAAAGCCAATTACGTTGAGA AAAAATTTTGTTGGACCTATATCTTTTTTTTCAATACTGTATACTTGCAG ACGAGGAAAAAAATGAAGAAGCTCAACTGTCTTCTTTTTTCTTTGCGATT TTTCGACGACGGTCCCGTGTTGATGTCGTCTGTTTCTGCCTTGTATCAGT CCGTTAATAGGGCCAGTCAGAAGCCTTTCATCGCACCTTGTTTTTACAAA TCGACCGTTTGTCCACGCGGATCTAAAGTCAAAAACTCAAACTCAAACCT CACAATGTAATGTTGGTCCGTCAGACGGTCGGTTACAAAAGTAGGCCCGA CCCTCTGCGGGTACCCTCGCTCTCCTAATGTAGAATTTTAGTGTTCCCTA CCACATTTTCCCTTATATCTTATTGAAATGTCGATATGTCACTCCTACCT ATGTTGTCTTGCCACAATGTCGGCATGTCGCTCATACCTTATCAAGGAAA AGTAAATGCACTCACAGAAAGGCTACCCATTCGAGATATACCGACAGTAT CTTATACGTTGCCAAAATGTGCACGTGTCGACGACAGGGAGGCAGTCTCA AGAAGACGTCGATGTCGGAGTTGAACTGGGACCACATCGTGACGGAGCCG GAGCACTTGCTGGAGCTGAAGGCTTACTGCTGCGAGGAGTGCGGGTATAC CCTCTTCCCAGCCCGAGGTATCTGTCTCTCTATCTGTCTATCTTTCTATC CAGCTGTCTGCTTGAGTATTTATCTATCGTTGTACACATGTGCAGTCGGG GGCCCAGTATTCGGCCGCCTAGTGCCGTAGGATTTTATCGGCCTTCCATC GTCAACCGGGCTTAACGCTAGCTTATTGCCCGGTGCTGTGTGCTGGCCAT TGGGAGATGTGTTGGCGGGCGTAGAGCGGGCTTGATGTCTGCTCGACGCC TATGTAAGTTATTCGGTGTCGGATACACGCGCTCTCTGTGTGTGCACCTG TATTTTTTGTGTCTAATGTTTTTGGACTGTTGTGTCTGCTGTTACTGTTG AATGTTGTGTCCTGTTTCTGTTTCTGATGTGTGGCTTCTTTCTGTTGTCT AATGTGCCTATCGTAATGTGTGATGCGTCTATTTCTATCGCAGTCTCTCT GTTGTGACTACTGTCGTTGTCTATTGTGTCTATTGTTATGTAGTGTTTCT TGTACCTAACGTGTCTACTGCTGTCTGTTGGGTGTTGTTTCCTGTTGTGG TTCAGGTCGGCACGAGGTGTTCTTCGACGAAGTGGAAGATTTCAAGTGCC CCGAGTGTGACGCACCACGATCGTCCTTCTTCGACGCTAACGACAAGAAT GACCCGCACAACCAGAAGGTGGAGTACGCCGTGTGCCATCTTGTTGTTGC TGTTGTTCCAGTTTTGATTCGGTTGCTGTCGCTGTTGCTGCTGCTGCTGC TGCTGTTGTTGTTGCTGCTGTTGCTGTTGTTGTAATTGCCGTCGTTCAGT TTTAGCTTGGTTGTGGTTCACGAGAGGTGAGTGCGACTTGTTGTGCGCGT GGTGGGCAGGCTGTGTTTATTTTGTGGCCCAAGTTTTGAGGTGCTTTTAT GGTCGTGTTCATTTCATCCGGGCACCGGCGATTCTCCCCTTCACACAGCT GAGCCACGGATCCTCTCGAGTGATTTCCGGTAAACCTGATTTTCTTACAC TCGCCACGCTGTTTAATCTTTGCCATGCATGCAGTACCTCATACCTCCCT TTCTTGTCTTATCTCATACCCCCGTCTCATACTCCCCCGTGTGTGTTTCG TGTTTGCAGCGTCTTGAAAAGATGGCGGCGAACGTGGCTGGATCGGGAAA GGCAGATGGGGAAGGGGGGGGTAGCGAGGATGCTGACGGTGGGAGCAGCG AGGGGGAAGTTGTTGCGTCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13442:1..4720-

>mRNA_Ecto-sp13_S_contig13442.2745.1 ID=mRNA_Ecto-sp13_S_contig13442.2745.1|Name=mRNA_Ecto-sp13_S_contig13442.2745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13442:1..4720- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGACGGCCGGACTTGCGCCAGATAGGCCTGCAGACCGCAGCGGCAGT
GGTGTTACAGCAAGACGAAGTCGTCGATGTTGCCGAGGTACAACCGGAGG
CGGAAGGTGACACCGTCGGGGAGGCATCGGGGGAGGAGTTTATGAACCTG
GCGGAGAGTTTCGACGCCTCTCAACGCCTGGTGGAGGAATCCATGATGGA
CCCGCAAACCGGGACGATCCAGGATCAGTACACCAAGTTGTACATGCCGA
TGGATGGCCTGGTGATCAAGAAGACCTACGGGTTCTGGACGTGGCAGGTG
TTCGGCTTCATCTTCGTGCAGCACTTCGTGAGAAACCTCATCCGCAAGGG
AGGCAGTCTCAAGAAGACGTCGATGTCGGAGTTGAACTGGGACCACATCG
TGACGGAGCCGGAGCACTTGCTGGAGCTGAAGGCTTACTGCTGCGAGGAG
TGCGGGTATACCCTCTTCCCAGCCCGAGGTCGGCACGAGGTGTTCTTCGA
CGAAGTGGAAGATTTCAAGTGCCCCGAGTGTGACGCACCACGATCGTCCT
TCTTCGACGCTAACGACAAGAATGACCCGCACAACCAGAAGCGTCTTGAA
AAGATGGCGGCGAACGTGGCTGGATCGGGAAAGGCAGATGGGGAAGGGGG
GGGTAGCGAGGATGCTGACGGTGGGAGCAGCGAGGGGGAAGTTGTTGCGT
CT
back to top