mRNA_Ecto-sp13_S_contig13440.2744.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13440.2744.1
Unique NamemRNA_Ecto-sp13_S_contig13440.2744.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: D8LUA3_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUA3_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 2.280e-102
Identity = 158/186 (84.95%), Postives = 170/186 (91.40%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGKIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYPAP 904
            H +   A+ +   + P  VA++ +   VVKNSAAMA+KL+ DGYQLVSGGTDNHLVLVDLKKS++IDGARVELMLE+VNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGKIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYPAP
Sbjct:  309 HTIAALATALKQAKAPEYVAYQKQ---VVKNSAAMAEKLIADGYQLVSGGTDNHLVLVDLKKSSNIDGARVELMLEVVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGKIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYPAP 491
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A835YWD3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD3_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.110e-63
Identity = 107/184 (58.15%), Postives = 136/184 (73.91%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGKIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYP 898
            H +   A+ +    TP   A++ +   V+KNS+A+A  L+  GYQLVSGGTDNHL+LVDLKKS ++DGARVE +LE+ NMATNKNTVPGD SAL PGGIRMGAPALT+RGFTEEDF +VA FF RGV ++  +   TGK+K Y+  LA G   +PE+ +L+ D+  F+R FP IGFD+ TMRYP
Sbjct:  318 HTIAALATALKQANTPEFKAYQKQ---VMKNSSALADALMGMGYQLVSGGTDNHLLLVDLKKSKNMDGARVERVLELANMATNKNTVPGDTSALMPGGIRMGAPALTTRGFTEEDFVKVAEFFDRGVKISMDIKEKTGKLKDYKAFLASGADAHPELAKLKADVVAFSRGFPAIGFDETTMRYP 498
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S2C4R3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4R3_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.460e-61
Identity = 107/185 (57.84%), Postives = 134/185 (72.43%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYP 898
            H +   A+ +    TP    ++ +   V+ NSA  AK L   GY+LVSGGTDNHLVLVDLKKS  IDGARVE +LE VNMATNKNTVPGD SA+TP GIRMG PALT+RGFTE DF++VA FF RGVT+++ +   TGK +K ++ ALA G +  PEI+ LR D+  FARTFP IGFD+ +M++P
Sbjct:  263 HTIAALATALKQATTPEYKEYQQQ---VMSNSAQFAKSLQAKGYELVSGGTDNHLVLVDLKKSRGIDGARVERVLECVNMATNKNTVPGDVSAMTPSGIRMGTPALTTRGFTEADFDKVAEFFDRGVTISQMLKESTGKKLKDFKAALAPGAAPVPEIEALRADVAAFARTFPTIGFDESSMKFP 444
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S0ANW0_9STRA (Glycine hydroxymethyltransferase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ANW0_9STRA)

HSP 1 Score: 199 bits (506), Expect = 6.660e-60
Identity = 101/185 (54.59%), Postives = 136/185 (73.51%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKV-AADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRY 895
            H +   A+C+    T   V ++ +   V+KN++A++K+L + GY LVSGGTDNHLVLVDLK S  IDGARVE +LE+  +A+NKNT+PGDKSALTPGGIRMGAPALTSRGF E+DF QVA FF R V +A ++ + D GK +K +RE  + G S  PE++QLR D++ FA +FP +GFD++ M +
Sbjct:   22 HTIGALATCLKQANTAEFVEYQKQ---VLKNASALSKRLNELGYTLVSGGTDNHLVLVDLKTSRGIDGARVERVLELACIASNKNTIPGDKSALTPGGIRMGAPALTSRGFVEDDFVQVANFFDRAVEIAVRLKSTDQGKKLKGFRELCSVGPSVDPELEQLRHDVSTFAESFPTVGFDEDEMEF 203
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S2WJP7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJP7_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.280e-57
Identity = 99/158 (62.66%), Postives = 122/158 (77.22%), Query Frame = 2 
Query:  428 VVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYP 898
            V+ NS+A+A  L   GY LVSGGTDNHLVLVDLK S  IDGARVE +LE+ N+ATNKNTVPGD SA+TPGGIRMGAPALTSRG  E DFE+VA FF RGV++A +V   TGK +K +R AL  G S  PE++ LR D+ +F++ FP +GFD+ +MR+P
Sbjct:  334 VMSNSSALASALTKRGYSLVSGGTDNHLVLVDLKASRGIDGARVERVLELANIATNKNTVPGDVSAMTPGGIRMGAPALTSRGLGEADFERVAEFFDRGVSIALQVKESTGKKLKDFRAALQPGASAVPELEALRQDVIDFSQQFPTVGFDESSMRFP 491
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S3Q0M1_9STRA (Serine hydroxymethyltransferase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M1_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.770e-54
Identity = 101/185 (54.59%), Postives = 132/185 (71.35%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVA-ADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRY 895
            H +   ++C+    TP  V ++ +   V+KN A+MAK+L D GY LVSGGTDNHLVLVDLK S  IDGARVE +LE+  +A+NKNT+PGD SALTPGGIRMG+PAL+SRGF E+DFE+VA FF R V +A K+   + GK +K +RE  A G S  PE++ LR D+  FA +FP +GF +E M +
Sbjct:  317 HTIGALSTCLKQVNTPGFVEYQKQ---VLKNCASMAKRLNDLGYNLVSGGTDNHLVLVDLKSSRKIDGARVERILELACIASNKNTIPGDTSALTPGGIRMGSPALSSRGFMEDDFEKVAEFFDRAVAIAVKLKKTEQGKKLKGFREMCAVGPSVDPELEVLRKDVMEFACSFPTVGFGEEEMEF 498
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S3M9R5_9STRA (Serine hydroxymethyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9R5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 8.550e-54
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSAS-IDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTG-KIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGF 874
            H +   A+ +    TP   A++++   V++NS   A  L+  GY LVSGGTDNHL+LV+LKKS + +DGARVE +LE+ N+ATNKNT+PGD SA+TPGGIRMG PALTSRG TEEDFE+VA FF R VT+ + + A TG KIK ++ ALA+G   +PE+++L +++  FAR+FP +GF
Sbjct:  312 HTISALATALKQALTPEYKAYQLQ---VLQNSKRFADVLMKLGYTLVSGGTDNHLLLVNLKKSKNGLDGARVERVLELANIATNKNTIPGDVSAMTPGGIRMGTPALTSRGLTEEDFEKVAHFFDRAVTITENINAKTGPKIKDFKAALANGAEGFPELQKLAEEVREFARSFPTVGF 486
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A7S2FD08_9STRA (Glycine hydroxymethyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD08_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.270e-52
Identity = 93/184 (50.54%), Postives = 129/184 (70.11%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRY 895
            H +   A+ +    T    A++ +   V+KN++  A+ L   GY LVSGGTDNHL+LVDLKKS  IDGARVE +LE+ N+ATNKNT+PGD SA+TPGGIRMGAPALTSRG  E+DF +VA FF RGV +A +V   TGK +K ++ AL    +   E+K L +++ +F++ F  +GF++++MRY
Sbjct:   69 HTICALATALKQANTAEFKAYQKQ---VMKNASVFAETLTGMGYNLVSGGTDNHLLLVDLKKSRGIDGARVERVLELANIATNKNTIPGDVSAMTPGGIRMGAPALTSRGLVEKDFVEVAKFFDRGVNIALEVKGATGKKLKDFKAALPSSEAN-AELKALENEVAHFSQQFMTVGFEEDSMRY 248
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A1E7EMB3_9STRA (Serine hydroxymethyltransferase n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7EMB3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.180e-52
Identity = 94/186 (50.54%), Postives = 127/186 (68.28%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTG---KIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRY 895
            H +   A+C+    TP  V ++ +   V+KN + ++ +L+  GY LVSGGTDNHLVLVDLK S  IDGARVE +LE+  +ATNKNT+PGDKSAL PGGIRMG PALTSRG TE+DF +VA +F R V +A  +  +T    K+K +R+    G S +P++ QLR +++ FA  FP +GFD+  M Y
Sbjct:  321 HTIGALATCLKQANTPEFVEYQKQ---VLKNCSRLSDELIKRGYHLVSGGTDNHLVLVDLKTSRKIDGARVERVLEMACIATNKNTIPGDKSALNPGGIRMGTPALTSRGLTEDDFTKVAEYFDRAVAIAVDLKENTEEGKKLKGFRKMCTVGPSVHPDLVQLRKEVSEFACEFPTVGFDESEMAY 503
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BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Match: A0A6V2A468_9STRA (Serine hydroxymethyltransferase n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2A468_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.670e-52
Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 2 
Query:  347 HCVRINASCISSGRTPSVVAHEIEEDLVVKNSAAMAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVA-ADTGK-IKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRY 895
            H +   A+ +    TP  V ++ +   V+KNS+ +A++L   GY LVSGGTDNHLVLVDLKKS  IDGARVE +LE+  +ATNKNTVPGD SAL PGGIRMGAPALTSRGF E+DF +VA FF R V++A ++   D GK +K ++   A G S +P++ +LR D+++FA +FP +GF++  M +
Sbjct:  313 HTIGALATALKQASTPDFVEYQKQ---VLKNSSRLAEELTKLGYTLVSGGTDNHLVLVDLKKSRGIDGARVERVLELACIATNKNTVPGDTSALMPGGIRMGAPALTSRGFMEDDFAKVAQFFDRAVSIATELKNTDEGKKLKGFKSMCAVGPSVHPDLVELRKDVSDFACSFPTVGFNESEMDF 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13440.2744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUA3_ECTSI2.280e-10284.95Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A835YWD3_9STRA2.110e-6358.15Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
A0A7S2C4R3_9STRA1.460e-6157.84Serine hydroxymethyltransferase n=1 Tax=Florenciel... [more]
A0A7S0ANW0_9STRA6.660e-6054.59Glycine hydroxymethyltransferase n=1 Tax=Minutocel... [more]
A0A7S2WJP7_9STRA2.280e-5762.66Serine hydroxymethyltransferase n=1 Tax=Rhizochrom... [more]
A0A7S3Q0M1_9STRA1.770e-5454.59Serine hydroxymethyltransferase n=1 Tax=Chaetocero... [more]
A0A7S3M9R5_9STRA8.550e-5453.93Serine hydroxymethyltransferase n=1 Tax=Spumella e... [more]
A0A7S2FD08_9STRA1.270e-5250.54Glycine hydroxymethyltransferase n=1 Tax=Dictyocha... [more]
A0A1E7EMB3_9STRA2.180e-5250.54Serine hydroxymethyltransferase n=3 Tax=Bacillaria... [more]
A0A6V2A468_9STRA3.670e-5252.43Serine hydroxymethyltransferase n=3 Tax=Lithodesmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13440contigEcto-sp13_S_contig13440:186..4696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score169.5
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog72664.XP_006411834.1
Model size907
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0009069,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0022626,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045087,GO:0046686,GO:0048046,GO:0048511,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901605,GO:1990904
Exons5
EggNOG free text desc.Belongs to the SHMT family
EggNOG OGs37K7X@33090,3GCUC@35493,3HMQT@3699,COG0112@1,KOG2467@2759
EC2.1.2.1
Cds size459
COG Functional cat.E
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13440.2744.1prot_Ecto-sp13_S_contig13440.2744.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13440 186..2046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.938573-CDS-Ecto-sp13_S_contig13440:185..4091681462717.938573-CDS-Ecto-sp13_S_contig13440:185..409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13440 186..409 -
1681462717.9504576-CDS-Ecto-sp13_S_contig13440:1099..12441681462717.9504576-CDS-Ecto-sp13_S_contig13440:1099..1244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13440 1100..1244 -
1681462717.9600947-CDS-Ecto-sp13_S_contig13440:1956..20461681462717.9600947-CDS-Ecto-sp13_S_contig13440:1956..2046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13440 1957..2046 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.9693544-UTR-Ecto-sp13_S_contig13440:2046..20671681462717.9693544-UTR-Ecto-sp13_S_contig13440:2046..2067Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13440 2047..2067 -
1681462717.9783244-UTR-Ecto-sp13_S_contig13440:3631..38241681462717.9783244-UTR-Ecto-sp13_S_contig13440:3631..3824Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13440 3632..3824 -
1681462717.9875116-UTR-Ecto-sp13_S_contig13440:4462..46961681462717.9875116-UTR-Ecto-sp13_S_contig13440:4462..4696Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13440 4463..4696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13440.2744.1

>prot_Ecto-sp13_S_contig13440.2744.1 ID=prot_Ecto-sp13_S_contig13440.2744.1|Name=mRNA_Ecto-sp13_S_contig13440.2744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MAKKLVDDGYQLVSGGTDNHLVLVDLKKSASIDGARVELMLEIVNMATNK
NTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVA
ADTGKIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYP
AP*
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mRNA from alignment at Ecto-sp13_S_contig13440:186..4696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13440.2744.1 ID=mRNA_Ecto-sp13_S_contig13440.2744.1|Name=mRNA_Ecto-sp13_S_contig13440.2744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13440:186..4696- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCAAAAGCTTATCGTAGCTGGAGCTAGCGCGTACTCGCGCAACATCGA
CTACGCCCGCATGAAGGAGGTCGCGGACGCCTCGGGGGCGTGGCTGCTGT
CGGACATGGCGCACATCAGCGGCCTGGTCTCGGCCGGCGTAGTGCCGTCC
CCTTTCCCCTACTCGGACATCGTTACCACAACCACCCATAAGAGCCTACG
AGGCCCGCGCGGCGCCATGATTTTCTACCGAAAGGTGTGTGCGTGTTTCT
GTGAGAGATAGGAGGGGCTTTGTAACAGGGGGTGTGGCCTTGGCTAGGTT
TTGCAAGAAAGTGTCGAGTAGTGCTTGCCTCTTCCGGGAACTTTTGTGTC
CGAGTCATCCTTCGCCGCTGCTCCCCTCTTCGTGGGGGAACACTCAACGC
TGAAAATTAATGCTTTTATTTTTGTCGATCTACAGCGTAGAAATTTGGGG
TCTTGACATTACCGGCTGGTGACATGCTCGGCGTCACCAAGTACGAGCAA
GACAATGTTCAACTTACGCCCGCACGCACACACACATGCATCGGCACGGC
CTGTGTGGTCCATTTCCGAGTTCCTCTTCCCCCCAGTCTTAACCCGGAGG
CAAGACCCAAGCCTGTATGTGTGCTCTGTGTGGGTACCTCTGCCTCTGCC
GGTTGCCGTCACTTGATCTACGCTTACAAGGACTACTCGTACAGCGATAA
CTCCCTCCTGGCCTGTTGCTACTTCCAGATCTTTCTTTCCTTGCCCCCCA
CCTAGCTCACTGTCAAGCGAAAAATTCAAGTCCATCGTTTGTTTTTTCGT
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGGTATCCCCACCCAATA
CGGCTGGCTCCTTAATGTGCAGGGTCAGCGCGGCACAACGAAGAAGGGGG
AGCCGATCATGTACGACCTCGAGAGCAAGATCAACTTTTCCGTATTCCCC
GGTAAGACTGGTTGACAGACACGAGACCGCATTTCACTGTGTTAGGATAA
ATGCAAGCTGTATATCTAGCGGTCGCACGCCAAGTGTAGTTGCACACGAG
ATCGAGGAGGACCTTGTTTTGTGGAATGTTCTTGACAGAGACGAGCATCT
TGGCTTTTTCGTGGGACTCACTTTGGTGTCCTGTCCATCGCCGCCCGGTA
GAAGGACACAGCAAGCGGGCAGGCAGGCACCAGATTTTTTTTGATTTTCC
CCGAATACTTGCCGGTGCCTGCATCGTGTTTGCCCCCGCGCGTGCGACGC
GTTTGGCTGCTGTGTACTTCTGAAGTAATTGTCACGTGTGAGTCAAATCA
ACGTGAATAAGTCAAGAGCACTGGTTTTGGTGGTTGGTTGATTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTGGCCGAAACACACCTCCCCGACGGGACGACCTGG
GTATCCGTATGTTTGCACCGCTCGAGCCGACCCTAATTTCCCTACGGTGT
TTGTGGTTGCTTGGATGTGTGTTGTGCGTGTGCCTGTCGTCATGATGGAA
CACGTCGCGAGTCGTGGTTCCTCTTGATGAGTGTGGCATCCCTCGGAAAT
GTTTTATTTTGTAGCCCTTTTAGGCCATATGCTTGCGCTGTTTTTATTCT
TCAATTCCCTGGCTTGTGTAAAACGCGACCGATCGCCACGAGCCAGGCGC
AACTGACGTATCTGAACGGAACGGAAAGATGCAACAGGCATCAGCAAGTG
TGATGCGAAGCATGGAATAAGCAGAACACTTGGAACATAAACACCAAAAC
GGCACATACCCCGTCGAGTCAAAGCGACATATTCCTTGGTTGCGCAAACT
CATCCACTTGAATTACAGAGGATGATCACTATGGCCACTCTCATCCGCTC
TGCTACTCCGGATGATTGATTTGGGATAGAATTGCTTCTTTATTTCCCGG
TTTCTCGGGCTTGGGCCCTCTCTTTTTTTGCTTGACTTGGTGCTCCCGCC
CCTGTTTTTATTTTTCCGGCGTGTTATTTGTCGTTTGTCGTTTGTCGTTC
ATCGTTCGTCGTTGGCGTGCGTCATCGTGCGAGGCATTCCCTCTGCCCAT
TCTTTTGCTAAAATGTTGGTTCCTGAAATCGAAGTGTCCGGAGAGCGCCC
AAGAGGCTGGTCATCATTTTTCTACACACTCTTGTCAACTTGCCTTCCCT
TCATCTGTTGGGATTTTTGTTCCGTCTCCCCCCCCCTCCAACGTTCTGTC
GACACGGACGTTCATTTGTTGCCGTGTAGGTGGTCAAGAACTCGGCGGCG
ATGGCGAAGAAGCTCGTCGACGACGGTTACCAGCTGGTCAGCGGTGGTAC
GGACAACCACCTCGTGCTCGTTGACCTCAAGAAGTCGGCGGTGAGTGGGT
GGTGCTGCCATGATGTAGCATGTAGTCATTTTGTCGCGTTCGTTCCCGTC
GTCGTTACGATGCAGTGCAAAGTAAACGTCTTTCTGTCGCAACTCTTCGG
TGTGGCGCTACTGTAGCGTGTGTACCACACCGCGCTGGCCATGACGCGAA
TGTGTGCGAGACGGCGCACACCACTGGATATCAGGAGGTACTTGTGCGTG
AGCAAGTGCTGTTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTCTACGCACGTCGCTTCGGTGGAATCAATTAAAAAAAACT
ATCGCTCATTCGTCCCGCATCACCCTTAACTTACAAGTATGATTTATCCT
TGGCTAAAGCCATCTCCTGGTCCAGGTTGGACGAAGAATAATACCGGGTT
ACGAGAAAGGATCATGCATCGGTGACGGAAGTTGCAAGGGGAAAAGCACC
ACATCCTTCGCATCCGCGCATCCTGCCGATCGTGAACAGCAAGCATCGAG
CCCACTCCGCATTAAGGCACTTACGTGAATGTGATCTAGACTCGTGACGT
CATCGCCAGGCTTCCAGTTTCACATGCCTACACTGTTGTTGTGTGCTTGC
ATGCATACATGCGTGCGAATGGTGAGTTGCTTCTGTTTTGATGCGGTGTA
AAAAGGTCAGTTGTATCATCGCTTCGTGTCCTTTTCGAATGGAAATCTGC
AGAGTATCGACGGCGCGCGCGTGGAGCTCATGCTCGAAATCGTCAACATG
GCCACCAACAAGAACACCGTGCCCGGGGACAAGAGCGCGCTGACCCCTGG
AGGCATCCGCATGGGCGCGCCGGCTCTCACCTCGCGTGGGTTCACGGGTA
CGTTGGGGCGTTCCTCGTAGCACGTGCGGTAGGCCCGTTGCAGGAATTTT
TTGTATTGGGTGCCAGTTTGTTTTCGTCGCGTAGTAGATGTGAGGCGTGT
CTGTTTTACGAGACCGTTGAGGTTGATGGAGACGCTGCCTCGTTTCGTGG
GTTTGTGGATTCGCTTGTGCTTGAGACACCCTTCGGAACACTGCGGTCAA
AATGGATGGTACGTATGGTGTTTCTCCCCTGGTTGTTTTTCCCCCTACCC
CCGGGCCCCCTCCTCTCCATCTGTACTGTATACCCACCCCCTTGTGTTGG
TTTGCACCCTCTGAGGCGTCTCCATCCCACTCCTGCGTGATTTCCATCTC
ACTTTTTCCCCCCCCCCTTTTGTTGGGTGTCCCCCTCTGGGGTGTCTCCC
CCCCCCCCCCGCGGGTTTTCCTTCTCCCCCTTTTTTTTTTTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCGATTTTGTGCTTTTGCAGAGGAGGACTT
CGAGCAGGTGGCGGCGTTCTTCCACAAGGGGGTGACCCTCGCGAAGAAGG
TGGCCGCCGACACGGGCAAGATCAAGGCCTACCGCGAGGCGCTCGCGGAC
GGGGGGAGCAAGTACCCCGAGATCAAGCAGCTGAGGGACGACATCAACAA
CTTCGCCCGCACCCCCGCCGATTTTGTGCTTTTGCAGAGGAGGACTTCGA
GCAGGTGGCGGCGTTCTTCCACAGGGGGGTGACCCTCGCGAAGAAGGTGG
CCGCCGACACGGGCAAGATCAAGGCCTACCGCGAGGCGCTCGCGGACGGG
GGGAGCAAGTACCCCGAGATCAAGCAGCTGAGGGACGACATCAACAACTT
CGCCCGCACTTTCCCGGTCATCGGGTTCGACCAGGAGACTATGCGTTACC
CGGCGCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13440:186..4696-

>mRNA_Ecto-sp13_S_contig13440.2744.1 ID=mRNA_Ecto-sp13_S_contig13440.2744.1|Name=mRNA_Ecto-sp13_S_contig13440.2744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13440:186..4696- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGAAGCTCGTCGACGACGGTTACCAGCTGGTCAGCGGTGGTAC
GGACAACCACCTCGTGCTCGTTGACCTCAAGAAGTCGGCGAGTATCGACG
GCGCGCGCGTGGAGCTCATGCTCGAAATCGTCAACATGGCCACCAACAAG
AACACCGTGCCCGGGGACAAGAGCGCGCTGACCCCTGGAGGCATCCGCAT
GGGCGCGCCGGCTCTCACCTCGCGTGGGTTCACGGAGGAGGACTTCGAGC
AGGTGGCGGCGTTCTTCCACAGGGGGGTGACCCTCGCGAAGAAGGTGGCC
GCCGACACGGGCAAGATCAAGGCCTACCGCGAGGCGCTCGCGGACGGGGG
GAGCAAGTACCCCGAGATCAAGCAGCTGAGGGACGACATCAACAACTTCG
CCCGCACTTTCCCGGTCATCGGGTTCGACCAGGAGACTATGCGTTACCCG
GCGCCCTGA
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