mRNA_Ecto-sp13_S_contig13425.2737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13425.2737.1
Unique NamemRNA_Ecto-sp13_S_contig13425.2737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13425.2737.1 vs. uniprot
Match: D7FXK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK5_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.710e-47
Identity = 176/252 (69.84%), Postives = 177/252 (70.24%), Query Frame = 3 
Query:    3 RVCSNAHALARVANREGPQARRLRTVRWSGLLHVWQGPRVGGRGLLRGYHPRTRG--NKHDGTTPSPVTPSKPTSEPISKPTPAPEGRTNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------------------------------------------------PATAPSGGGGDYPGEYQELLERHNQIRRERVGWVHARRRPPGLE 608
            RVCSNA AL RV NREG +   LRTVRWSGLLHVWQGPRVGGRGLLRGYHPR RG   KHDGTTPSPVTPSKPTSEP       PE RT PP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                 PATAPSGGGGD PGEYQELLERHNQIRRERVG VHARRRPPGLE
Sbjct:    2 RVCSNADALDRVPNREGLE---LRTVRWSGLLHVWQGPRVGGRGLLRGYHPRARGAVEKHDGTTPSPVTPSKPTSEPXXXXXXVPEARTTPPPVTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPATAPSGGGGDDPGEYQELLERHNQIRRERVGKVHARRRPPGLE 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13425.2737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXK5_ECTSI1.710e-4769.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13425contigEcto-sp13_S_contig13425:2524..4226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons4
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.4737635-CDS-Ecto-sp13_S_contig13425:2523..25911681462717.4737635-CDS-Ecto-sp13_S_contig13425:2523..2591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13425 2524..2591 +
1681462717.4897625-CDS-Ecto-sp13_S_contig13425:2672..27741681462717.4897625-CDS-Ecto-sp13_S_contig13425:2672..2774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13425 2673..2774 +
1681462717.4998312-CDS-Ecto-sp13_S_contig13425:3239..32701681462717.4998312-CDS-Ecto-sp13_S_contig13425:3239..3270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13425 3240..3270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.5082664-UTR-Ecto-sp13_S_contig13425:3270..36441681462717.5082664-UTR-Ecto-sp13_S_contig13425:3270..3644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13425 3271..3644 +
1681462717.5163968-UTR-Ecto-sp13_S_contig13425:4193..42261681462717.5163968-UTR-Ecto-sp13_S_contig13425:4193..4226Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13425 4194..4226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13425.2737.1prot_Ecto-sp13_S_contig13425.2737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13425 2524..3270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13425.2737.1

>prot_Ecto-sp13_S_contig13425.2737.1 ID=prot_Ecto-sp13_S_contig13425.2737.1|Name=mRNA_Ecto-sp13_S_contig13425.2737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
CVCAPTRTPSPVLPTARVLKHVVCGQCGGPGCSTFGKDLGLGAEDCCEGT
ILELGEISTMVPLRPP*
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mRNA from alignment at Ecto-sp13_S_contig13425:2524..4226+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13425.2737.1 ID=mRNA_Ecto-sp13_S_contig13425.2737.1|Name=mRNA_Ecto-sp13_S_contig13425.2737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13425:2524..4226+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTGTGTGCTCCAACGCGCACGCCCTCGCCCGTGTTGCCAACCGCGAG
GGTCCTCAAGCACGTCGTGTGCACACGAAACCTTTAACGCTAGAGCGGCT
TCAACCAACAACTTGGATGCCCCACACCAACGCAATCGTGCCGTCGCAGT
TGCGGACAGTGCGGTGGTCCGGGCTGCTCCACGTTTGGCAAGGACCTCGG
GTTGGGGGCCGAGGACTGCTGCGAGGGTACCATCCTCGAACTCGGGGAAA
TGTGCGGCATAGCTCCTTGCACGACGAACGCCGGTGCGTATGAGTATGCG
TCGTGGTGAAAGTCGGATGAACCCTGGCTAGGCATCGGACCCAGTCACTG
TTGGGGCCGCCGGTCTTCATGCACCCATATATAGGACTGTTTGCCCCTTG
TTTTTCGTGCGATGTGCTGTTGGTGGTGTTGATGCTCTCCTCCTATAACA
CAATCGTTCCGGTAGCTACAGTAGTTCGTGCAGCCTGTTTCGTCCCCAGT
CTCCACGGCACGAGAAGAGCGAGGTTTCGGTGGACAAAAGCCACAGCCCA
AACGAAGTCTCTCGAAAGAACTGAAACAACCTCTTCATCTGTTAGTCTCT
CTATATCGCAAATACTAATCGACTGGTTCCTGTTTTGGTCCACGTTTTCC
CTTTTTTTGCTCTCGCTGTTTGGGCATCATGGCAACGATTGTGTTTTCCC
CGCACCAGCTGTTGAGAAGCACGATGGTACCACTCCGTCCCCCGTGACGC
CTTCCAAGCCCACGTCGGAGCCCATTTCGAAACCCACTCCTGCTCCCGAG
GGTAGGACGAACCCGCCCTCTCCGACGGAGCCTACCGCGGAACCTACCTC
GAAACCTACCCCTGCAACCGAGGGTAGGACGACGCCGTCCCCGGTGAAGG
AGTCTACGGTAGAACCTACCTCGAAGCTCACTCTTGCACCCGAGGCTATG
ACGACCCCGTCCCCGGTGACAACGCCTACCGTGGAACCGACCTCGAAACC
CACCCCTACGCCAGAGGCCGAGCCCGCGACCGCTCCGAGTGGAGGCGGGG
GCGATTACCCCGGGGAGTATCAGGAGCTTCTAGAACGCCACAACCAGATC
AGGCGAGAGAGAGTGGGGTGGGTGTGGAGACACACGGCAGGAAATGTACG
CAACAGTGCGTTGCAAGAACGCGGAGAATGCCAATGTGTGCCACTTATCC
CGGGAAGTTGTTCGGGTTGCCGATCTCTTTGCTCGCAAACGATTTTTAGC
GCGGATGAATGCGTGCAGATTTCAAAAGGCTTCGCTTCCGTGCGGCCCCG
AAGACCGGTGATCGTTGTTCGTTGAGCGTGCTCCCACCGATCGATGTCTT
TCGCGAGTTGAGGGCGAACAGGGAGCGAGTGTCGTTGAGATGTTTTCTAG
GAGGATCTTTTTGCTAGGCGGGGAGGGACTTCAACATTGGAAGTGTGGAC
GATTTTCGTGTGGGTTTCCTCCGAGCGAATGGCTGCGATGTTATCGAGGG
TGCATATCCTCTCCTCTTCCAGCAGACTCTCGGCAAAAGACAGTGTGCCG
TCCTGCATGACGAGTTTCGCTTCTTGCCCTGATATATTGTCGAAGGAAAA
CACTAACGCCCTCTTCGGCGCGTTTTCATGCGCCCGTAATAATTGACGGT
ATGAAAACGGGTTGCCCCAGGTGCATGCACGGCGCCGACCCCCTGGTCTG
GAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13425:2524..4226+

>mRNA_Ecto-sp13_S_contig13425.2737.1 ID=mRNA_Ecto-sp13_S_contig13425.2737.1|Name=mRNA_Ecto-sp13_S_contig13425.2737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13425:2524..4226+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTGTGTGCTCCAACGCGCACGCCCTCGCCCGTGTTGCCAACCGCGAG
GGTCCTCAAGCACGTCGTTTGCGGACAGTGCGGTGGTCCGGGCTGCTCCA
CGTTTGGCAAGGACCTCGGGTTGGGGGCCGAGGACTGCTGCGAGGGTACC
ATCCTCGAACTCGGGGAAATAAGCACGATGGTACCACTCCGTCCCCCGTG
A
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