mRNA_Ecto-sp13_S_contig1342.2732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1342.2732.1
Unique NamemRNA_Ecto-sp13_S_contig1342.2732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1342.2732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1342contigEcto-sp13_S_contig1342:3514..5542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size352
Hectar predicted targeting categorysignal anchor
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.1060612-CDS-Ecto-sp13_S_contig1342:3513..37201681462717.1060612-CDS-Ecto-sp13_S_contig1342:3513..3720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1342 3514..3720 -
1681462717.1148005-CDS-Ecto-sp13_S_contig1342:5398..55421681462717.1148005-CDS-Ecto-sp13_S_contig1342:5398..5542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1342 5399..5542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1342.2732.1prot_Ecto-sp13_S_contig1342.2732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1342 3514..5542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1342.2732.1

>prot_Ecto-sp13_S_contig1342.2732.1 ID=prot_Ecto-sp13_S_contig1342.2732.1|Name=mRNA_Ecto-sp13_S_contig1342.2732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
ELIRIPLCCGFEIKAEGLVALAAGRRYSMPGMDNPRQHGSLLADGIDRVV
RHTCCRRRRRPWPPSATARRATVVVTVASATLAAVVLVLAVVARPAAAAT
STAAASSTWSSGTVGT*
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mRNA from alignment at Ecto-sp13_S_contig1342:3514..5542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1342.2732.1 ID=mRNA_Ecto-sp13_S_contig1342.2732.1|Name=mRNA_Ecto-sp13_S_contig1342.2732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1342:3514..5542- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGATACGGATTCCCTTGTGCTGTGGTTTCGAGATCAAAGCAGAGGG
ACTAGTTGCTCTTGCTGCAGGGAGGAGGTACAGCATGCCAGGAATGGACA
ATCCACGTCAACATGGGTCCCTTCTTGCAGATGGCATTGATCGGGTAAGT
TCGTACCACAGCAGCTCTTGTGTAGAGACGAGATGCATGATGCGGGCCTT
GACTTGATACTGATTCTGACCTGCTTCAGGAGTGCATTGATGATCCCTGT
CCTCTGCAGAGGAAGAAAGCATGTAGAGTGTAAAACATACCAAAGACTCT
TCCACAGCAGGAATCCATGTGGCGTACGCCGCAGTTTGCTGCACCACGCT
GCTTTTGCACCGATTTGCACAGAAGCCATGCGATAAGTACATATGTAGAT
AAGTAGTATCGCCTGTGTGGGTTGGCCACACGACTTTCGGGGGGCCGAAA
GATAAATAGGTCTCACACAACAGGCTCGGCTATTTCAGATGCATGTGTAA
GACAGTACACGAGTTCCTCTTTCTCGGATCCGGCGAGTGTTGCCCATCCA
TGGCACCGCCGCCATTAGCGAGCGGGAGCAAAGGAGGCGGAGTAGAGGTC
TATGAGCACGTCAAAAGTCGAAGGCCACACCCACAAAACTACAAACATGT
CACACTCTAAGGTCTTTCCCCCCATGCGTTGTTCCCTTTTAGTGTAAGCA
TGTTCCAGTGCGACTCTGTTGTCGCCTGGTTCTGTCTTGCGATGGGGGAT
GAGGATGCAGAGTTTGTCTATCGGGTGTACGTAAGCGGCGTTCTGGCGCC
TGCTAGACTTGCTGCGGGAACGGTCTCGGAAGCAGCCCATGAACGGCGTT
TGAAGAGAAAAGAACGGCCACCTTTCGATTTGCCCCACCTACAGCAGTAC
CTCTGTGATATCTTGCAGTTCGTTGGCACTTGCTCGCGGCCACAACAGCA
GCAGTCCGTCCAGCCCCGCAGCGTGAGATCCAGCCCGACTGCAACGAGAG
CTCCAGGAGAAGGCGGTCAGCTTTTCGTACTAGCGGCAGTTCTCAAGGAG
TGTGGCCGTCTCCGATTTCCGTAGGTCGAGACAGGGCGGCTCGTAGGCGG
TAGTCGAGACGGGCAACATGTGGCCGTCCTTGCTGTGCTTATTCTAGCAA
GAACAGCATTGGCATTAATAACCCCTTTTTGTGGCCATGTTTCTTGTTGT
GCTCAGCTGCAAGAATAGCACAACCCCCGGTGGCCGCCTGTCTTTGCTTC
GCTTATCTAGCGAGAATAGCATTACCAGCCCCCTTGCGGCCGTCTATCTT
GTTGTGCTTACCTAGCAAGAACATCACCACCACCTCTTTCCAGAAAAAAA
TCATACATCACTGTAGAACTAACACCATCTCGTTTGGCCGACACCGGGTC
CGCCGCTTTGGCGGAAGCGTTCGTTACCGGTGGGCCAGTCTAGTGGCGTG
ACTAGCCCCGACGATCGCCACGTTGTTGAAACCAGCCGGCTAGCAACCTA
GTAGCGCCCATCGGGTAGAGGGTAGGGTTCACCCCTCGTTCGTTCGGCTC
TCACCCCTTTCCTCTATTGGTATTTTTCTGCTTGGTTGGGTTTCATGCGG
GTAGGCGTCCAGGTCTGCGGGAAGAGGTACCATTTTTTTTTTTTTTTCTG
CGCCACTCCGTCATGCCCGAAGTAGGAAGGAACGATTGGCCATCGTTGGT
CGGCCCTGAAGGAACAATGCTCTCGCGTCCTCTCGTGGTCAAATGGTCCA
ACCGCTAAGGCATGCAAAAACAAGAGTACACCCCGACCCGCGCGCCATTT
GCCGGGTTTTTTCTTACGCCAGGTTGTCCGCCACACGTGCTGCCGCCGGC
GCCGACGCCCGTGGCCGCCGAGCGCAACGGCTCGACGTGCGACTGTCGTA
GTTACTGTTGCTTCTGCTACGCTGGCGGCGGTGGTGTTGGTGTTGGCTGT
CGTTGCCCGCCCTGCTGCTGCGGCTACTAGCACTGCTGCTGCTTCTTCGA
CGTGGTCGAGTGGTACCGTAGGTACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1342:3514..5542-

>mRNA_Ecto-sp13_S_contig1342.2732.1 ID=mRNA_Ecto-sp13_S_contig1342.2732.1|Name=mRNA_Ecto-sp13_S_contig1342.2732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1342:3514..5542- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGATACGGATTCCCTTGTGCTGTGGTTTCGAGATCAAAGCAGAGGG
ACTAGTTGCTCTTGCTGCAGGGAGGAGGTACAGCATGCCAGGAATGGACA
ATCCACGTCAACATGGGTCCCTTCTTGCAGATGGCATTGATCGGGTTGTC
CGCCACACGTGCTGCCGCCGGCGCCGACGCCCGTGGCCGCCGAGCGCAAC
GGCTCGACGTGCGACTGTCGTAGTTACTGTTGCTTCTGCTACGCTGGCGG
CGGTGGTGTTGGTGTTGGCTGTCGTTGCCCGCCCTGCTGCTGCGGCTACT
AGCACTGCTGCTGCTTCTTCGACGTGGTCGAGTGGTACCGTAGGTACGTA
G
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