mRNA_Ecto-sp13_S_contig13414.2730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13414.2730.1
Unique NamemRNA_Ecto-sp13_S_contig13414.2730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5KJL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 5.880e-55
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   10 VEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            VE+DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+   N R+ G RME+ C+ WL+ WVR+GMQ VR+E  VCLTSCF  R+D +   + GN+ S+GGWACDWRD  DD P P  LHRLVN
Sbjct:  165 VEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAREIGSRMEKTCRTWLSGWVRNGMQPVRLEPHVCLTSCFPVRVDKQGDRNAGNHGSKGGWACDWRDEEDDQPPPGFLHRLVN 288          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.160e-48
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            G QV++DCRKLEEL VCDWLRS+SRRVP NDVI VATKCD+V  N  + GRR+E+A + WLASWV DGMQ VR+E  VCLTSC A  +        G+ ASE GWACDWRD+ DD P P L+HRLVN
Sbjct:  331 GGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKSTGHNASERGWACDWRDDRDDMPPPGLVHRLVN 457          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 4.060e-48
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGG--NYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            G QV++DCRKLEEL VCDWLRSISRRVP NDVI VATKCD V  N  + G+R+E A + WLASWVR GMQ VR+E  VCLTSC     +V E G     N A EGGW CDWRD  DDNPSPSLLHRLVN
Sbjct:  431 GGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCT--TNVCEDGERSTRNQAMEGGWTCDWRDGKDDNPSPSLLHRLVN 557          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 5.550e-48
Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHG----GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            G+  ++DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+V  N  + G RME +C+ WL+ WVR+GMQ VR+E  VCLTSCF     +R G HG    GN+  +GGWACDWR+  DD PSPS LHRLVN
Sbjct:  502 GEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFP----IRVGEHGERSAGNHVWKGGWACDWRNVEDDQPSPSFLHRLVN 628          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.290e-47
Identity = 81/127 (63.78%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
             DQV +DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+   N    G RME AC++WL+SWVR+G+Q VR+E  V LTSCF   +        G++  +GGWACDWRD  D NPSPSLLHRLVN
Sbjct:  287 NDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVN 413          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.130e-46
Identity = 90/179 (50.28%), Postives = 102/179 (56.98%), Query Frame = 1
Query:    1 GDQVEKDCRKLEELCVCDWLRSISRRVPGN--------------------------------------------DVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDV-------REGGHG-GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            G QV+KDCRKLE+LCVCDWLRSISRRVP N                                            DVI VATKCD+   N  +TGRR+EEAC+ WLA WVRDGMQ VRVED VCLTSC              ++G    GN+AS+G WACDWRDN D+N SP+LLHRLVN
Sbjct:  145 GGQVDKDCRKLEDLCVCDWLRSISRRVPDNEGGSYVIFGKVEHRTSNKRIVRSSTFWGRRQEEEHKKQPHQTHPDVILVATKCDLAGGNAWETGRRIEEACRTWLADWVRDGMQPVRVEDGVCLTSCCVXXXXXXXXXXXXKQGNDSRGNHASKGTWACDWRDNADENSSPNLLHRLVN 323          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 7.680e-46
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    4 DQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHG----GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            DQVE+DCRKL+ L VCDWLRSISRRVPGNDVI VATKCD+V+ N  +TGRR+E AC+ WL++WVR+GM  VR+E  V LTSCF     + +G HG    G+ AS+ GWACDWR    D  SPSLL+RLVN
Sbjct:  219 DQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFP----IGDGEHGESNTGSDASKQGWACDWRHVEGDKSSPSLLYRLVN 344          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.030e-45
Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    7 QVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            QV++DCRKLEEL VC WLRSISRRVP +DVI VATKCD+   N  D G+R+  AC+ WL++WVR+GMQ VR+E  VCLTSC    +        GN+ ++GGW CDWRD+ DD+ SPSLLHRLVN
Sbjct:  691 QVQEDCRKLEELRVCHWLRSISRRVPYSDVILVATKCDLACGNAGDMGKRLAHACRLWLSNWVRNGMQPVRLEHGVCLTSCCPAAVSEHGESSPGNHYAKGGWGCDWRDHRDDSSSPSLLHRLVN 815          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.860e-45
Identity = 80/126 (63.49%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    4 DQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            DQVE+DCRKLE L VCDWLRSIS RVPGNDVI VATKCD+V  N  +TG+R+E AC+ WL+SWVR+GM +VR+E  V LTSCF            GN+A + GWACDWRD   D  SPSLL+RLVN
Sbjct:  268 DQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQRIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIGASEHGESRRGNHALKQGWACDWRDVEGDMSSPSLLYRLVN 393          
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.770e-45
Identity = 81/143 (56.64%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   10 VEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRD-------------------GMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
            VE DCRKLEEL VCDWLRSISRR+P NDVI VATKCD+   N R+ G RME+AC+ WL+ WVR+                   GMQ VR+E  VCLTS    R+D       GN+ S+GGWACDWRD  DD P PS LHRLVN
Sbjct:  106 VEGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAGGNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVRVDEHGDRSAGNHGSKGGWACDWRDEEDDQPPPSFLHRLVN 248          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KJL6_9PHAE5.880e-5566.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI2.160e-4864.57LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI4.060e-4867.44LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LF46_ECTSI5.550e-4863.36LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE1.290e-4763.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L846_9PHAE5.130e-4650.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI7.680e-4663.08LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LCS7_ECTSI2.030e-4560.80LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L650_9PHAE3.860e-4563.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE4.770e-4556.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13414contigEcto-sp13_S_contig13414:48..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.9
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog2880.D7FUC9
Model size381
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons1
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size381
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.035453-CDS-Ecto-sp13_S_contig13414:47..4281681462717.035453-CDS-Ecto-sp13_S_contig13414:47..428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13414 48..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13414.2730.1prot_Ecto-sp13_S_contig13414.2730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13414 48..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13414.2730.1

>prot_Ecto-sp13_S_contig13414.2730.1 ID=prot_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTG
RRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYA
SEGGWACDWRDNTDDNPSPSLLHRLVN
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mRNA from alignment at Ecto-sp13_S_contig13414:48..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13414.2730.1 ID=mRNA_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13414:48..428+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATCAGGTAGAGAAAGACTGCCGCAAGCTGGAAGAACTGTGCGTGTG CGATTGGCTACGATCGATTTCTCGCCGGGTTCCCGGCAATGACGTCATCT TCGTTGCCACCAAGTGTGATATGGTGGCCGAAAACCCTAGGGACACCGGT CGAAGAATGGAAGAGGCCTGTCAACAGTGGCTGGCAAGCTGGGTTCGCGA CGGCATGCAAGCGGTCAGGGTGGAAGACAGCGTTTGCCTCACGAGCTGCT TTGCACCAAGAATGGATGTACGAGAAGGGGGCCACGGTGGAAATTACGCT TCGGAGGGAGGTTGGGCGTGCGACTGGCGGGACAATACGGACGATAATCC CTCGCCTAGCCTGCTCCACCGACTCGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13414:48..428+

>mRNA_Ecto-sp13_S_contig13414.2730.1 ID=mRNA_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13414:48..428+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATCAGGTAGAGAAAGACTGCCGCAAGCTGGAAGAACTGTGCGTGTG
CGATTGGCTACGATCGATTTCTCGCCGGGTTCCCGGCAATGACGTCATCT
TCGTTGCCACCAAGTGTGATATGGTGGCCGAAAACCCTAGGGACACCGGT
CGAAGAATGGAAGAGGCCTGTCAACAGTGGCTGGCAAGCTGGGTTCGCGA
CGGCATGCAAGCGGTCAGGGTGGAAGACAGCGTTTGCCTCACGAGCTGCT
TTGCACCAAGAATGGATGTACGAGAAGGGGGCCACGGTGGAAATTACGCT
TCGGAGGGAGGTTGGGCGTGCGACTGGCGGGACAATACGGACGATAATCC
CTCGCCTAGCCTGCTCCACCGACTCGTCAAC
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