mRNA_Ecto-sp13_S_contig13414.2730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5KJL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE) HSP 1 Score: 183 bits (464), Expect = 5.880e-55 Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1
Query: 10 VEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
VE+DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+ N R+ G RME+ C+ WL+ WVR+GMQ VR+E VCLTSCF R+D + + GN+ S+GGWACDWRD DD P P LHRLVN
Sbjct: 165 VEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAREIGSRMEKTCRTWLSGWVRNGMQPVRLEPHVCLTSCFPVRVDKQGDRNAGNHGSKGGWACDWRDEEDDQPPPGFLHRLVN 288
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.160e-48 Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
G QV++DCRKLEEL VCDWLRS+SRRVP NDVI VATKCD+V N + GRR+E+A + WLASWV DGMQ VR+E VCLTSC A + G+ ASE GWACDWRD+ DD P P L+HRLVN
Sbjct: 331 GGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKSTGHNASERGWACDWRDDRDDMPPPGLVHRLVN 457
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 174 bits (442), Expect = 4.060e-48 Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGG--NYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
G QV++DCRKLEEL VCDWLRSISRRVP NDVI VATKCD V N + G+R+E A + WLASWVR GMQ VR+E VCLTSC +V E G N A EGGW CDWRD DDNPSPSLLHRLVN
Sbjct: 431 GGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCT--TNVCEDGERSTRNQAMEGGWTCDWRDGKDDNPSPSLLHRLVN 557
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 174 bits (441), Expect = 5.550e-48 Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1
Query: 1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHG----GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
G+ ++DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+V N + G RME +C+ WL+ WVR+GMQ VR+E VCLTSCF +R G HG GN+ +GGWACDWR+ DD PSPS LHRLVN
Sbjct: 502 GEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFP----IRVGEHGERSAGNHVWKGGWACDWRNVEDDQPSPSFLHRLVN 628
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.290e-47 Identity = 81/127 (63.78%), Postives = 93/127 (73.23%), Query Frame = 1
Query: 1 GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
DQV +DCRKLEEL VCDWLRSISRRVP NDVI VATKCD+ N G RME AC++WL+SWVR+G+Q VR+E V LTSCF + G++ +GGWACDWRD D NPSPSLLHRLVN
Sbjct: 287 NDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVN 413
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 168 bits (426), Expect = 5.130e-46 Identity = 90/179 (50.28%), Postives = 102/179 (56.98%), Query Frame = 1
Query: 1 GDQVEKDCRKLEELCVCDWLRSISRRVPGN--------------------------------------------DVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDV-------REGGHG-GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
G QV+KDCRKLE+LCVCDWLRSISRRVP N DVI VATKCD+ N +TGRR+EEAC+ WLA WVRDGMQ VRVED VCLTSC ++G GN+AS+G WACDWRDN D+N SP+LLHRLVN
Sbjct: 145 GGQVDKDCRKLEDLCVCDWLRSISRRVPDNEGGSYVIFGKVEHRTSNKRIVRSSTFWGRRQEEEHKKQPHQTHPDVILVATKCDLAGGNAWETGRRIEEACRTWLADWVRDGMQPVRVEDGVCLTSCCVXXXXXXXXXXXXKQGNDSRGNHASKGTWACDWRDNADENSSPNLLHRLVN 323
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 168 bits (425), Expect = 7.680e-46 Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 4 DQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHG----GNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
DQVE+DCRKL+ L VCDWLRSISRRVPGNDVI VATKCD+V+ N +TGRR+E AC+ WL++WVR+GM VR+E V LTSCF + +G HG G+ AS+ GWACDWR D SPSLL+RLVN
Sbjct: 219 DQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFP----IGDGEHGESNTGSDASKQGWACDWRHVEGDKSSPSLLYRLVN 344
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 167 bits (422), Expect = 2.030e-45 Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 7 QVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
QV++DCRKLEEL VC WLRSISRRVP +DVI VATKCD+ N D G+R+ AC+ WL++WVR+GMQ VR+E VCLTSC + GN+ ++GGW CDWRD+ DD+ SPSLLHRLVN
Sbjct: 691 QVQEDCRKLEELRVCHWLRSISRRVPYSDVILVATKCDLACGNAGDMGKRLAHACRLWLSNWVRNGMQPVRLEHGVCLTSCCPAAVSEHGESSPGNHYAKGGWGCDWRDHRDDSSSPSLLHRLVN 815
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.860e-45 Identity = 80/126 (63.49%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 4 DQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRDGMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
DQVE+DCRKLE L VCDWLRSIS RVPGNDVI VATKCD+V N +TG+R+E AC+ WL+SWVR+GM +VR+E V LTSCF GN+A + GWACDWRD D SPSLL+RLVN
Sbjct: 268 DQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQRIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIGASEHGESRRGNHALKQGWACDWRDVEGDMSSPSLLYRLVN 393
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 166 bits (419), Expect = 4.770e-45 Identity = 81/143 (56.64%), Postives = 92/143 (64.34%), Query Frame = 1
Query: 10 VEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGRRMEEACQQWLASWVRD-------------------GMQAVRVEDSVCLTSCFAPRMDVREGGHGGNYASEGGWACDWRDNTDDNPSPSLLHRLVN 381
VE DCRKLEEL VCDWLRSISRR+P NDVI VATKCD+ N R+ G RME+AC+ WL+ WVR+ GMQ VR+E VCLTS R+D GN+ S+GGWACDWRD DD P PS LHRLVN
Sbjct: 106 VEGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAGGNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVRVDEHGDRSAGNHGSKGGWACDWRDEEDDQPPPSFLHRLVN 248 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13414.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13414.2730.1 >prot_Ecto-sp13_S_contig13414.2730.1 ID=prot_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp GDQVEKDCRKLEELCVCDWLRSISRRVPGNDVIFVATKCDMVAENPRDTGback to top mRNA from alignment at Ecto-sp13_S_contig13414:48..428+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13414.2730.1 ID=mRNA_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13414:48..428+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13414:48..428+ >mRNA_Ecto-sp13_S_contig13414.2730.1 ID=mRNA_Ecto-sp13_S_contig13414.2730.1|Name=mRNA_Ecto-sp13_S_contig13414.2730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13414:48..428+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |