mRNA_Ecto-sp13_S_contig1341.2727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1341.2727.1
Unique NamemRNA_Ecto-sp13_S_contig1341.2727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A6H5KV70_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV70_9PHAE)

HSP 1 Score: 554 bits (1427), Expect = 1.410e-190
Identity = 281/318 (88.36%), Postives = 291/318 (91.51%), Query Frame = 1
Query:   37 MVDGRDSGSEGGKMLEVDWASLETNLCAETLESLRQHLQHQDGAAVAAPSGAEERAAEAEPASXXXXXXXXXXXSASPTRGAGSVALPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 990
            M+DG DSGSEG ++LEVDW SLETNL AETLESLRQHLQHQDGA VAAPS AEERAAEAEP S           S SPTR AG VALPASN+VYKAKEYWDSRFSEEESYDWLASYADIAE+LHE VPRDARVLVVGCGNSGLSADMYDDGYRRVDM+STDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPW+PD ATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFR+KFLLGEHPAAAGLL  RRQG +EGHS+D EGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR
Sbjct:    1 MIDGGDSGSEGEEVLEVDWVSLETNLSAETLESLRQHLQHQDGATVAAPSSAEERAAEAEPVSAADGSSRSGGGSTSPTRNAGLVALPASNLVYKAKEYWDSRFSEEESYDWLASYADIAEHLHEAVPRDARVLVVGCGNSGLSADMYDDGYRRVDMVSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWSPDRATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRRKFLLGEHPAAAGLLDARRQGEDEGHSNDGEGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 318          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A836CL89_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL89_9STRA)

HSP 1 Score: 204 bits (519), Expect = 6.790e-57
Identity = 112/235 (47.66%), Postives = 144/235 (61.28%), Query Frame = 1
Query:  289 VALPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPR--DARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            + LPASN  Y  +EYW++RF++E+ YDWLA Y DIA  L E  P+  D+R+L+VGCGNS L+ DM+D GYR  +++STDFS VVI  M+ ++    PGLRWE MDML L   + SFD V+DKAAMDA+   +GD W+PDPA I+  HRMC  VSRVLV GG FVQ+SF Q HFR  +L G+   A+                       YGW     +I  EG     F Y++ K
Sbjct:   20 IELPASNSDYSKREYWNTRFADEQEYDWLAGYKDIASILSELTPKGKDSRILLVGCGNSTLTKDMHDAGYR--NLVSTDFSEVVIQAMQQRY-GDLPGLRWEVMDMLNLQYPEGSFDMVLDKAAMDAITTAEGDMWDPDPAVIDAVHRMCTGVSRVLVPGGTFVQISFVQPHFRLPYLTGKRVGASV---------------------DYGWQCSKREI--EGKVMPHFCYIMHK 228          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A1W0A6C7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6C7_9STRA)

HSP 1 Score: 200 bits (508), Expect = 9.890e-56
Identity = 105/234 (44.87%), Postives = 148/234 (63.25%), Query Frame = 1
Query:  295 LPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAA--EDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 990
            LP  N  YK + YWD+RF+ EESYDWLA Y+D+A+ + + VP+D+R+L+VGCGNS  S D+YD GY  +  ++ DFS+VVI++M AK+  +R  ++W   DML L    E  SFD V+DKAAMDALMV+ GD W+P    +  +H MC+ + +VL   G+F+Q+SF Q HFRK+FLLGE+P          QG E            YGW  + H+I+      G F Y+++K+
Sbjct:    3 LPRHNSEYKNQSYWDTRFASEESYDWLAKYSDVADLITKYVPKDSRLLIVGCGNSTFSIDLYDAGYTNI--VNLDFSSVVIERMSAKYSESRRLMKWAVGDMLKLPEFFESNSFDVVIDKAAMDALMVEGGDTWSPAEHLLASAHEMCSGIKKVLTPTGLFLQISFGQPHFRKRFLLGEYP----------QGDESS---------AYGWTYKYHNIEIG---LGYFFYVMQKK 212          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A482S291_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S291_9ARCH)

HSP 1 Score: 199 bits (505), Expect = 4.350e-55
Identity = 98/231 (42.42%), Postives = 141/231 (61.04%), Query Frame = 1
Query:  298 PASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 990
            P SN  +K +EYW+ RF +EESY+WL S+ ++   +   +    R+L+VGCGNS  SAD+YD+G+  +  +  DF+  VI ++R  H+ +RP + WE MDM ALA  D SFD V+DKAAMDAL+VD+GD W+PD + I+   +MC  +S+VL S G+ +Q+SF Q HFR K+L+G           +   G             YGW L    I+ EGGC   FLY+++K+
Sbjct:    9 PDSNADFKLQEYWERRFQKEESYEWLTSWKNVRTQILPYIKPTDRILIVGCGNSSFSADIYDEGFHNITNI--DFAESVITRLRELHVLSRPEMSWEVMDMTALAFTDESFDVVLDKAAMDALVVDEGDVWDPDLSVIDVVDKMCLGISKVLKSTGIHMQISFAQPHFRTKYLIGYRAEGVNSSPYQASTGLAAR---------YGWSLSYETIENEGGCLNSFLYIMKKQ 228          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A7S2Y3W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3W0_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.960e-54
Identity = 97/209 (46.41%), Postives = 137/209 (65.55%), Query Frame = 1
Query:  364 YDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 990
            Y+WL SYAD+ E+L   +  + +VL+VGCGNS LS+DMYDDG+  +++ S D+S VVI+KM+ K    RPG++WE MDM+ L  ++ SFD V+DKAAMDALM ++GDPWNP+   +    RMC+ +SRVL  GGV +Q+SF Q HFR+K+L+GEH +                         Y W  +  ++ REGGCFG FLY+++K+
Sbjct:    1 YEWLVSYADLKEHLRTYIFPENKVLLVGCGNSSLSSDMYDDGF--INITSIDYSPVVIEKMKQKS-QDRPGMKWEVMDMMDLTFDEGSFDCVLDKAAMDALMCEEGDPWNPNSEVVTSVSRMCSCISRVLRPGGVHLQISFAQPHFRRKYLMGEHCSEN-----------------------YNWSFEYINLVREGGCFGHFLYIMKKQ 183          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A485KM56_9STRA (Aste57867_9023 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KM56_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.670e-54
Identity = 106/233 (45.49%), Postives = 142/233 (60.94%), Query Frame = 1
Query:  295 LPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAE--DASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            LP  N  YK +EYW+SRF  EE+YDWLA Y D+AE + + V +D R+L+VGCGNS  S D+Y+ GY  +  L  DFS+VVI++M AK+ A+ P + W   DML L A+   ASFD V+DKAAMDALMV+ GD W+P    +   H MCA +  +LV+ G+F+Q+SF Q HFRK+FLLG+ P       V  Q               YGW  + H+I       G + Y+L+K
Sbjct:    5 LPRDNKEYKKQEYWNSRFENEETYDWLARYKDVAELIAQYVQKDQRLLIVGCGNSTFSIDLYEAGYTNITNL--DFSSVVIERMHAKYSASHPLMTWVVGDMLKLPAQFSPASFDVVIDKAAMDALMVEGGDTWSPAEHLLASGHEMCAGIQSILVTTGLFIQISFGQPHFRKRFLLGDAPDG----NVSTQ---------------YGWTYKYHNIDIG---LGYYFYVLQK 213          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A024UL85_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UL85_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.920e-53
Identity = 107/233 (45.92%), Postives = 138/233 (59.23%), Query Frame = 1
Query:  295 LPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDA--SFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            LP  N  Y  +EYWDSRF  EESYDWLA Y D+A  L + V  D R+L+VGCGNS  S D+Y+ GY  +  ++ DFS VVID+MRAK+  + P + W   DML L    A  SFD V+DKAAMDALMV+ GD W+P    +   H+MCA V  VL + G F+Q+SF Q HFRK++LLG+ P   G L                    YGW+LQ H+I       G F ++++K
Sbjct:    3 LPKDNREYGKQEYWDSRFESEESYDWLARYNDVATLLDQYVRTDQRILIVGCGNSTFSVDLYEAGYTNI--VNLDFSTVVIDRMRAKYSVSHPLMTWIVGDMLTLTESFAPQSFDVVIDKAAMDALMVEGGDTWSPPSHLLAAGHQMCAGVQSVLTATGTFIQISFGQPHFRKRYLLGDAPH--GSLSTA-----------------YGWNLQHHNIDIG---LGYFFFVMQK 211          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: A0A225WNN2_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNN2_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.350e-52
Identity = 108/233 (46.35%), Postives = 138/233 (59.23%), Query Frame = 1
Query:  295 LPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAA--EDASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            LP SN  YK K YWDSRF +EE+YDWLA Y D+A+ L + V    R+L+VGCGNS  S DMY  G+  +  +  DFS VVI++M AKH    P ++W + DM  L       SFD V+DKAAMDALM D+GD W+P  A IEQ+  MC  ++ VLV  G FVQ+SF Q HFR++FLLGE              GE+  +        YGWD   H+I+      G F Y+L+K
Sbjct:    5 LPESNHTYKEKGYWDSRFDKEETYDWLARYEDVADLLDKYVRPSDRILMVGCGNSTFSIDMYQAGFHNITNI--DFSKVVIERMSAKHSEEMPEMKWLEADMTKLGEVFTSESFDVVIDKAAMDALMCDEGDVWSPSDAVIEQAAAMCNGITSVLVPQGTFVQISFAQPHFRRRFLLGE--------------GEQVPTSTI-----YGWDYSYHNIEIG---LGYFFYVLQK 213          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: V9E4J8_PHYPR (Methyltransf_25 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4J8_PHYPR)

HSP 1 Score: 190 bits (482), Expect = 5.400e-52
Identity = 108/233 (46.35%), Postives = 137/233 (58.80%), Query Frame = 1
Query:  295 LPASNVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAE--DASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            LP  N  YK K YWDSRF  EESYDWLA Y ++AE L + V    R+L+VGCGNS  S DMY  G+  +  +  DFS VVI++M AK+    P ++W + DM  L       SFD V+DKAAMDALM D+GD W+P  A IEQ+  MC+ ++ VLV  G FVQ+SF Q HFRK+FLLGE              GE+  S        YGWD   H+I+      G F Y+++K
Sbjct:    5 LPEDNRTYKEKGYWDSRFDSEESYDWLARYENVAELLAKYVRPSDRILMVGCGNSTFSIDMYKAGFHNITNI--DFSKVVIERMSAKYSEEMPEMKWLEADMTKLREVFMPNSFDVVIDKAAMDALMCDEGDVWSPSEAVIEQASAMCSGITSVLVPQGTFVQISFAQPHFRKRFLLGE--------------GEQAPSST-----VYGWDYSYHNIEIG---LGYFFYVMQK 213          
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Match: T0S8X2_SAPDV (Methyltransf_11 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0S8X2_SAPDV)

HSP 1 Score: 189 bits (480), Expect = 8.040e-52
Identity = 101/229 (44.10%), Postives = 140/229 (61.14%), Query Frame = 1
Query:  307 NVVYKAKEYWDSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDDGYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAE--DASFDAVVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHDIQREGGCFGQFLYLLRK 987
            N  YK + YWDSRF+ EESYDWLA Y D+A+ + + VP+ +R+L+VGCGNS  S D+YD GY  +  ++ DFS+VVI++M AK+  +RP +RW   DML L+     +SFD V+DKAAMDALMV+ GD W+P    + Q+  MC  V +VL   G+F+Q+SF Q HFRK+FLLG+ P A                        YGW  + H+I       G F ++++K
Sbjct:    5 NKEYKNQSYWDSRFASEESYDWLARYNDVADLIVQYVPKSSRILIVGCGNSTFSVDLYDAGYTNI--VNLDFSSVVIERMSAKYTESRPLMRWVVGDMLKLSESFGASSFDVVIDKAAMDALMVEGGDTWSPAEHLLAQARDMCTGVQKVLKPDGLFIQISFGQPHFRKRFLLGDAPEADVSTA-------------------YGWTYKYHNIPIG---LGYFFFVMQK 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1341.2727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV70_9PHAE1.410e-19088.36Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A836CL89_9STRA6.790e-5747.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1W0A6C7_9STRA9.890e-5644.87Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A482S291_9ARCH4.350e-5542.42Class I SAM-dependent methyltransferase n=1 Tax=ar... [more]
A0A7S2Y3W0_9STRA2.960e-5446.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A485KM56_9STRA3.670e-5445.49Aste57867_9023 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024UL85_9STRA3.920e-5345.92Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A225WNN2_9STRA1.350e-5246.35Methyltransf_25 domain-containing protein n=1 Tax=... [more]
V9E4J8_PHYPR5.400e-5246.35Methyltransf_25 domain-containing protein n=10 Tax... [more]
T0S8X2_SAPDV8.040e-5244.10Methyltransf_11 domain-containing protein n=3 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1341contigEcto-sp13_S_contig1341:7509..11837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score563.1
Seed ortholog evalue8e-158
Seed eggNOG ortholog2880.D7FJW5
Preferred nameECE2
Model size2373
KEGG koko:K01415
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006479,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008233,GO:0008237,GO:0008276,GO:0008757,GO:0009987,GO:0010002,GO:0010467,GO:0010817,GO:0012505,GO:0012506,GO:0016020,GO:0016278,GO:0016279,GO:0016485,GO:0016486,GO:0016740,GO:0016741,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0030133,GO:0030154,GO:0030658,GO:0030659,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0034641,GO:0035051,GO:0036211,GO:0042445,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0051604,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0071704,GO:0072359,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-10_000720.1
EC3.4.24.71
Cds size957
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1341.2727.1prot_Ecto-sp13_S_contig1341.2727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1341 7545..10457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.773168-UTR-Ecto-sp13_S_contig1341:7508..75441681462716.773168-UTR-Ecto-sp13_S_contig1341:7508..7544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1341 7509..7544 +
1681462716.8559854-UTR-Ecto-sp13_S_contig1341:10457..118371681462716.8559854-UTR-Ecto-sp13_S_contig1341:10457..11837Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1341 10458..11837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.7994826-CDS-Ecto-sp13_S_contig1341:7544..76671681462716.7994826-CDS-Ecto-sp13_S_contig1341:7544..7667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1341 7545..7667 +
1681462716.8153207-CDS-Ecto-sp13_S_contig1341:8743..89531681462716.8153207-CDS-Ecto-sp13_S_contig1341:8743..8953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1341 8744..8953 +
1681462716.8261225-CDS-Ecto-sp13_S_contig1341:9253..93841681462716.8261225-CDS-Ecto-sp13_S_contig1341:9253..9384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1341 9254..9384 +
1681462716.8357754-CDS-Ecto-sp13_S_contig1341:9608..97561681462716.8357754-CDS-Ecto-sp13_S_contig1341:9608..9756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1341 9609..9756 +
1681462716.8454804-CDS-Ecto-sp13_S_contig1341:10112..104571681462716.8454804-CDS-Ecto-sp13_S_contig1341:10112..10457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1341 10113..10457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1341.2727.1

>prot_Ecto-sp13_S_contig1341.2727.1 ID=prot_Ecto-sp13_S_contig1341.2727.1|Name=mRNA_Ecto-sp13_S_contig1341.2727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=319bp
MVDGRDSGSEGGKMLEVDWASLETNLCAETLESLRQHLQHQDGAAVAAPS
GAEERAAEAEPASAADGSSSSGGGSASPTRGAGSVALPASNVVYKAKEYW
DSRFSEEESYDWLASYADIAEYLHETVPRDARVLVVGCGNSGLSADMYDD
GYRRVDMLSTDFSAVVIDKMRAKHLAARPGLRWEKMDMLALAAEDASFDA
VVDKAAMDALMVDKGDPWNPDPATIEQSHRMCAEVSRVLVSGGVFVQLSF
EQVHFRKKFLLGEHPAAAGLLGVRRQGGEEGHSDDREGGGPYGWDLQVHD
IQREGGCFGQFLYLLRKR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1341:7509..11837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1341.2727.1 ID=mRNA_Ecto-sp13_S_contig1341.2727.1|Name=mRNA_Ecto-sp13_S_contig1341.2727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1341:7509..11837+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGCTGTTGTGTGGTGGGTGTGTGCGGCGGCCATGGTCGATGGTCG GGACAGCGGGAGCGAGGGCGGGAAAATGCTTGAGGTGGACTGGGCGTCTC TCGAGACTAACCTGTGCGCGGAAACGCTGGAGAGTTTGCGACAGCATCTC CAACACCAGGTGAGTGAGAGTCAACACATCAGGCAAAGCTCTTACCGCCG TGCATGCACACAAGCGCCGACGCGCGCAGTGTCCTCTGTGTGTTTGGACA TGCACGACACGACCACTACATCCACCCCATAGGCTTCAAAACTATTTGAC GAAGAAGTACCTCTGTCGATCTAGTCTATATTGTTGGTCGTGTTCATTGC AGTGATTGGAGGGACAACTGTCAATGGAAACCGGCTTGCGTACCACCGCG ACTATCTAAGTTCACTGCATATCTTACCCAGGGTCGACCCTTGGATGTAT TCAGCTCCTCTCGCAGGTACATGTGATAGGGATGAGGTCGGCTTTCAAGT TGACGCACAGATTCCTGGCAAACACGGGCACAACATCGCCTACTATGGTC ATTTGCTAAGCACTCATCAAACACCTTTGCAGTACAGCAGCAGTAGTTTA GACAAGATGAGCATAGCTCGATGTTTCTCCAGAAACGACGATGGAGGAGG CATTGGAACCGTCGCGCCGAAAGCTTTCCGCAAAGTGGATCATGTCATCT GTGGCATCCTCTTGGAATAGTCAGGCTTTGGATGTGAGCAGGGGGGTGCG GTATTTTACGGATCCCTCGGCGGTAGCATACTCCTGTTGGTACACGCTTG GGTGTACGTGTGTAAATGTAGGTATATTCGTAGAAGAGACGAGATACGCA GGGTGAACATCGTTTGTAACAGACTCGACCCCGTTTTTGTGTAACGATGT CCCACCTCACTCTCTCAGAGGAATCTCCAATGTTCAGGTGAACCCACTAA AGAAGAACAGTTGACGCGACGTACATATTAGTCGTCGGCGTGAACATACC TATAGGATAGTGAGCAGCGAGGGGCGGCGCTGATGTTGTAGGACATTTTT GCGTAGAGAGCCTACGTAGACCGTCGCTCCCAACTACCGTGCCAGTCTCC ACCCCAGCCCGGCAGGTGATGGAGGTGTAAGATGGATTGTATGTTTAGGC GGTGCTGCATGTGTGCTTTGGCAGACTGAAAACGCCGCCAACTCTCCAAC GACCGTCCTGTCTCTTCCGGCACTGCTGCCTTTAGGATGGTGCGGCCGTC GCAGCACCCTCAGGCGCTGAAGAGCGAGCAGCGGAGGCAGAACCAGCGTC AGCAGCGGATGGGAGTAGTAGTAGTGGCGGCGGTAGCGCTAGCCCAACGA GAGGTGCGGGCTCGGTAGCACTGCCCGCGTCCAACGTGGTATACAAGGCA AAGGAGTACTGGGACAGCCGCTTCTCCGAGGAGGAGTCGTACGATGTGAG AGATCCCCCGGTCAACTCAAGTCCATGTTTTGGCCTAATTCACCCGCACT GAAAATAGGTTAGAGCAACCCGTGTTCACGCGCTTATTCTCATTTCAAGT CGTTACTCCCAGTGAAACAAGAAGGGCGATGCGAGTCATGCCGACGTTGC CGGGGAAGTTCTTACCGGGCGTGAATACCCTTAGTTTGGCACATGTGGTT TTGCTCTCTTTGGTGTTGCTGCCTCATAGCGTGACGTGCCTCTTTTCATG CGCGCTCCTCGTGTGATTGATCTCTTCGCTTGGCGAGCGGGAAAGTGGCT AGCGAGCTACGCCGACATCGCGGAGTACTTGCACGAAACGGTGCCGAGGG ATGCCCGAGTACTCGTCGTTGGCTGCGGCAACAGTGGCCTCAGCGCGGAC ATGTATGATGACGGATACAGGCGAGTGTGTGCTGTTTTATTTGTAGCATC GACCGTGCTAACCGGCTGACCAATGAATATATGAAAATATGTCATCCCTG TAATGTGTGTATGTGTCGTCCCATTTTTTGAGGACGACAGTCGTTTCATT CCTTGTAATATTATAGTCGTCAAGTGACAAGAACATGGCAAACGATATGT GAGTTTCCCTCCACACAAACACGCCCTACAACACCCCCTGATACCTGCAG GGATATGCTCAGCACGGACTTCTCGGCGGTGGTGATAGACAAGATGCGGG CGAAGCACCTCGCAGCTCGCCCAGGGCTGCGGTGGGAGAAGATGGACATG CTCGCCCTGGCGGCAGAGGACGCGAGCTTTGACGCCGTCGTCGACAAGGT GCAGTATTCTGCGTTAGGAAACGAGAAAACTCGCGCCTCGTCAGATCGCC AGATGCCGCTTGCGTACAAGTGCGGTGCGTCAGGTTTTACCGTTGTCGAA AAAGTTGGAAGAGCGCGGCTTTTCCTTGCTGCTATGCGTAGATGATGATG TAGCGATCGACTCGACGGGACCGTTAATGTACCGACCTCTGCCCTGCATG GTAAAACGCTCTGTCGTTATTTGGCAGAAGCCCATCCTAGATGGCAGTGT GCTCCGGTTTTTGCGTACAGGAGTAGACTGTGTCACTTTCCGGATGGAAG AACCACGGCATCCCCGTACCGATCCCGCCTCCCTCTCCTTTCGCGGAATC CCAGGCGGCAATGGACGCCTTAATGGTCGACAAAGGGGACCCTTGGAACC CGGACCCAGCCACAATCGAGCAATCCCACCGCATGTGCGCGGAGGTCTCC AGGGTGCTCGTGTCCGGAGGCGTTTTCGTGCAGCTTTCGTTCGAGCAGGT CCACTTCCGGAAGAAGTTCCTTCTGGGCGAGCACCCCGCCGCTGCCGGTC TTCTTGGCGTAAGACGCCAGGGGGGAGAGGAGGGGCACAGCGATGATCGG GAGGGGGGGGGTCCCTACGGCTGGGACTTGCAGGTGCATGACATCCAGCG AGAGGGGGGGTGTTTCGGGCAGTTCTTGTACCTGTTGAGGAAGCGATGAG GGGCGGGGGCCGGCGACAAACTGCGGGGTGTGTCTCTCGGAAGGACCACG AGCAACGACATGGTTTGGTGTGTAGAAACTTGGGCGTGCCGGTTGAAGAA TAATGGGAGACAGCGTTGCCAAGTGCGGTGGCGGTGGCGCTGGTGCTGCT GCAGAAATTGCGTGCCCTCGTGATACGGCTGGGACACCGCAACTTGCACG TGAAAGCGACCCCCGCCCGGCCTGTCGTTTAGGCCCGAAACGCTAGTACA ACGTGTTATCGTATTGAGTGGATTCGCCTCTGTTTGATGTGGTGGTAAGA TTTGCCCCGCCGCAAGGCGCCGAGTCGAGCGTCGTACCGTATACAACACA AAATAACACACCCCGGTGCTATCTAGCCTTTCGATTTCAAAATGGAGTCA CGGGGTGTGTTTATTAACCCTCCTAGTACCCAGTCCCTCTGCAAAAAAAA AATGCCTAAAAATGTTTGTTAGCCATTGGTCGAGGGGCTACAGTCCCTCC AAAGATCTGAGCTCCTTGCAAAAGAGCGATCTGGCTTCAGTTTGAAAAAT GTCCACGAAACATGCTGAAGCCAAGTCCGCAAAAAATTTCCAGTACCAAG CGATGTACAGTTTTACAACCAAGGGGGGGCGCGAGTTGGGAGGTGTGTAC AGCAAGTCAAAGGCCCAGGAGAGGCACCACACAGCACGTCACACAGCGTA CGATCTCAGCCAAGCATGACAAACCAAGGGTTCTCACGTGCGTTGCACGC AGCGGACCATTCGGTGACACCAGCGCGGTTAATAGGCGTTTTGAGTGCTG TGTCCCAATGCGTCCTCATTTGGGCGTCCAGGACTAGGAGGATTAATCTT GTGCCGTGTAATATACGGTATGCGGATGCAAGGACGCCCGGTGACGCGGT TTTGGCCAAGATTTGTTTGACGCAGTAAAGTGTGAACAGACCAGCCTTAC GTGGGTTTCCCCTATTTCGGATTAGGCTTGGGGAGGAACGATGCACAGAA ATTGAGCGTGTCCGCGGTTCATTCCCGTAAACATGTATAAGCGTAACACC TTGACATGTGCTGGTAAAAATCGCGTAGTGCGTCATGTGGAGAAAGTCGA GTGAGTGTGGTGGATGCCCAATAGTCTTTAAGGGTAGCGAATGTAGCATG AGTAGACTATTCGGGGTTCCGGGATTGACGTTTAGCTGAGGCGTGAGCAC GAACAATAATGTAGCAGGCCCATAAGTGCAAGTTTGGAGTTTACTAAGCA AACACTTATTCCTGAGTGTTGCCTTCTGTTTCAGGATGTCATTGGGTAAG CTTTGGCTTGAGGAAGACCAGGAGTGTTGGTCATGTTCTACGCGTTACCG AACTCCAAGGTCTTGAATAATTGGAGAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1341:7509..11837+

>mRNA_Ecto-sp13_S_contig1341.2727.1 ID=mRNA_Ecto-sp13_S_contig1341.2727.1|Name=mRNA_Ecto-sp13_S_contig1341.2727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=957bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1341:7509..11837+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGATGGTCGGGACAGCGGGAGCGAGGGCGGGAAAATGCTTGAGGT
GGACTGGGCGTCTCTCGAGACTAACCTGTGCGCGGAAACGCTGGAGAGTT
TGCGACAGCATCTCCAACACCAGGATGGTGCGGCCGTCGCAGCACCCTCA
GGCGCTGAAGAGCGAGCAGCGGAGGCAGAACCAGCGTCAGCAGCGGATGG
GAGTAGTAGTAGTGGCGGCGGTAGCGCTAGCCCAACGAGAGGTGCGGGCT
CGGTAGCACTGCCCGCGTCCAACGTGGTATACAAGGCAAAGGAGTACTGG
GACAGCCGCTTCTCCGAGGAGGAGTCGTACGATTGGCTAGCGAGCTACGC
CGACATCGCGGAGTACTTGCACGAAACGGTGCCGAGGGATGCCCGAGTAC
TCGTCGTTGGCTGCGGCAACAGTGGCCTCAGCGCGGACATGTATGATGAC
GGATACAGGCGAGTGGATATGCTCAGCACGGACTTCTCGGCGGTGGTGAT
AGACAAGATGCGGGCGAAGCACCTCGCAGCTCGCCCAGGGCTGCGGTGGG
AGAAGATGGACATGCTCGCCCTGGCGGCAGAGGACGCGAGCTTTGACGCC
GTCGTCGACAAGGCGGCAATGGACGCCTTAATGGTCGACAAAGGGGACCC
TTGGAACCCGGACCCAGCCACAATCGAGCAATCCCACCGCATGTGCGCGG
AGGTCTCCAGGGTGCTCGTGTCCGGAGGCGTTTTCGTGCAGCTTTCGTTC
GAGCAGGTCCACTTCCGGAAGAAGTTCCTTCTGGGCGAGCACCCCGCCGC
TGCCGGTCTTCTTGGCGTAAGACGCCAGGGGGGAGAGGAGGGGCACAGCG
ATGATCGGGAGGGGGGGGGTCCCTACGGCTGGGACTTGCAGGTGCATGAC
ATCCAGCGAGAGGGGGGGTGTTTCGGGCAGTTCTTGTACCTGTTGAGGAA
GCGATGA
back to top