mRNA_Ecto-sp13_S_contig13406.2724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13406.2724.1
Unique NamemRNA_Ecto-sp13_S_contig13406.2724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13406.2724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13406contigEcto-sp13_S_contig13406:1294..2199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.5630894-UTR-Ecto-sp13_S_contig13406:1293..16411681462716.5630894-UTR-Ecto-sp13_S_contig13406:1293..1641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13406 1294..1641 -
1681462716.5818276-UTR-Ecto-sp13_S_contig13406:2184..21991681462716.5818276-UTR-Ecto-sp13_S_contig13406:2184..2199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13406 2185..2199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.57262-CDS-Ecto-sp13_S_contig13406:1641..21841681462716.57262-CDS-Ecto-sp13_S_contig13406:1641..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13406 1642..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13406.2724.1prot_Ecto-sp13_S_contig13406.2724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13406 1642..2184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13406.2724.1

>prot_Ecto-sp13_S_contig13406.2724.1 ID=prot_Ecto-sp13_S_contig13406.2724.1|Name=mRNA_Ecto-sp13_S_contig13406.2724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MPSFRPPLVLLLTRTPAWVYRRPNIAGFQQLHCPDGRVLRRLGSRWRGAG
LGDRTRSRNTSSSRGSRRRRTPGLALRHARPERAVLFRRCLVAKNASHDR
AHQAKDESNDGHGKGRTRGEVDRVDTGIVGDIIQRILDWVGSTAVRSNRR
EGGRHVGRDQGQGTNQFSFLDGHQMDRIGT*
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mRNA from alignment at Ecto-sp13_S_contig13406:1294..2199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13406.2724.1 ID=mRNA_Ecto-sp13_S_contig13406.2724.1|Name=mRNA_Ecto-sp13_S_contig13406.2724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13406:1294..2199- (Ectocarpus species13 EcNAP12_S_4_19m)
TATAATTACGACGGGATGCCTTCCTTCCGGCCCCCGCTGGTGCTACTACT
GACCCGTACACCAGCATGGGTCTATCGAAGACCAAATATTGCAGGTTTTC
AGCAGCTACACTGTCCCGACGGCAGGGTATTGAGAAGACTTGGTTCCCGC
TGGCGCGGCGCCGGGCTGGGGGACCGCACTCGTAGTCGCAACACCAGCAG
TAGCCGGGGGAGCCGACGAAGGCGCACCCCCGGCCTTGCACTTAGACATG
CACGCCCTGAAAGGGCCGTCTTGTTCCGTCGTTGCCTTGTTGCGAAGAAC
GCAAGTCACGATCGCGCCCACCAAGCCAAAGATGAAAGCAACGACGGCCA
CGGCAAGGGTAGGACCAGGGGAGAAGTCGACCGAGTAGACACCGGAATAG
TAGGAGACATAATACAACGAATCCTCGACTGGGTGGGGTCGACCGCGGTA
CGGAGCAACAGGAGGGAGGGAGGGAGGCATGTCGGGAGGGATCAGGGACA
AGGGACAAATCAATTCTCGTTCTTGGACGGACACCAGATGGATCGGATTG
GTACGTAAGTTCTCTGCGGCAAATGTCGATTGCTCGCTACCATTGCTTCA
AGTGCTCGAGCAACAGCCTGTAGGACTACAAAGTGTCCACGCGAGCATTC
TCGATCCCTGCCATGTACCGCTACACCCGCTACTGCTGAAGGAGACCTTG
TCATTCTCCCGCTTGCTCGTAGCAGGACAGCCCATGTACGTCCAACGTTA
TTAGACTACTTGCTGCGTCGAGGGCATTGGCCTACCAGCCTTGTGCCCCG
CGGAACTTCATAACTACACCGTAACAATTATTGGACTAGACTGGTTGATG
ATCGCACATTCATCGATGAAGGCAGCAAAGGTGCAGAAGGCGATGAGCTC
CAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13406:1294..2199-

>mRNA_Ecto-sp13_S_contig13406.2724.1 ID=mRNA_Ecto-sp13_S_contig13406.2724.1|Name=mRNA_Ecto-sp13_S_contig13406.2724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13406:1294..2199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCCTTCCGGCCCCCGCTGGTGCTACTACTGACCCGTACACCAGC
ATGGGTCTATCGAAGACCAAATATTGCAGGTTTTCAGCAGCTACACTGTC
CCGACGGCAGGGTATTGAGAAGACTTGGTTCCCGCTGGCGCGGCGCCGGG
CTGGGGGACCGCACTCGTAGTCGCAACACCAGCAGTAGCCGGGGGAGCCG
ACGAAGGCGCACCCCCGGCCTTGCACTTAGACATGCACGCCCTGAAAGGG
CCGTCTTGTTCCGTCGTTGCCTTGTTGCGAAGAACGCAAGTCACGATCGC
GCCCACCAAGCCAAAGATGAAAGCAACGACGGCCACGGCAAGGGTAGGAC
CAGGGGAGAAGTCGACCGAGTAGACACCGGAATAGTAGGAGACATAATAC
AACGAATCCTCGACTGGGTGGGGTCGACCGCGGTACGGAGCAACAGGAGG
GAGGGAGGGAGGCATGTCGGGAGGGATCAGGGACAAGGGACAAATCAATT
CTCGTTCTTGGACGGACACCAGATGGATCGGATTGGTACGTAA
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