mRNA_Ecto-sp13_S_contig13400.2721.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13400.2721.1
Unique NamemRNA_Ecto-sp13_S_contig13400.2721.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: D7FLB9_ECTSI (Isocitrate lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLB9_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 5.640e-134
Identity = 205/226 (90.71%), Postives = 207/226 (91.59%), Query Frame = 2 
Query:  590 RPLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARALSSRLLGGKQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            RPLN+LVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEAR LS+RLLGGKQVYFDWDAPRSREGYFKLKGGVDYCIAR              GRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQ    FITLAGFHSDGLIVSRLAKEYGK
Sbjct:  290 RPLNDLVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARVLSARLLGGKQVYFDWDAPRSREGYFKLKGGVDYCIAR--------------GRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQ----FITLAGFHSDGLIVSRLAKEYGK 497
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A835YPK9_9STRA (Isocitrate lyase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK9_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.480e-77
Identity = 130/228 (57.02%), Postives = 169/228 (74.12%), Query Frame = 2 
Query:  590 RPLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARALSSRLLGG--KQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            RP+NE++  A A GAS + ++ ++K+W   AGLMR+PEAV  AI    GL     RL+ W SKAY+L + +ARAL+++LLGG  K  +FDW+APRSREGY+K++GGVDYC+AR               RA+A HADLLWMETAKP L EAR FA G+H A P Q LAYNLSPSFNWD+AGM++ +MA+FNR+LG+LG+V+Q    FITLAGFH+DGLI +RL++EYG+
Sbjct:  282 RPVNEVMSAAAAAGASADKVNDIAKEWTASAGLMRYPEAVARAIECS-GLPDAQTRLKHWASKAYTLGHDQARALAAQLLGGPAKLPHFDWEAPRSREGYYKVRGGVDYCVAR--------------ARAFAPHADLLWMETAKPILEEARQFAHGVHEAFPRQMLAYNLSPSFNWDSAGMTEAQMASFNRDLGQLGYVFQ----FITLAGFHADGLITARLSREYGQ 490
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: W7TRS4_9STRA (Isocitrate lyase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRS4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.950e-69
Identity = 123/226 (54.42%), Postives = 157/226 (69.47%), Query Frame = 2 
Query:  590 RPLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARALSSRLLGGKQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            R LNE+V EARA G +   +D+++  W   A L RFPEAV  A+ +   L     +L  WK++AY+LS  +ARAL+  L+G ++VYFDW+APRSREGY+++KGGVDYC+AR                AYA HADL+WMETAKP+L EAR FA+G+ AAVP + LAYNLSPSFNWD AG+S QEM  FN  L  +GFVWQ    FITLAGFH++GL+ +  A+EYGK
Sbjct:  320 RALNEVVAEARAQGVTGAELDRITDQWTAAANLRRFPEAVCDALST---LPNPAPKLAVWKAQAYNLSLPQARALAKELMG-REVYFDWEAPRSREGYYRIKGGVDYCVARAV--------------AYAPHADLIWMETAKPDLSEAREFAQGVRAAVPGKMLAYNLSPSFNWDVAGLSPQEMEHFNSSLAAMGFVWQ----FITLAGFHANGLMTTMFAREYGK 523
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A7S3XN19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN19_HETAK)

HSP 1 Score: 199 bits (506), Expect = 4.060e-57
Identity = 101/210 (48.10%), Postives = 137/210 (65.24%), Query Frame = 2 
Query:  647 IDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARALSSRLL---GGKQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            +  L  +W   AGLMR+PEAV  A+ +   L  R  RL  W++++Y LS+  A+AL++RLL   G     FDW+APR+REG++++KGG+DY IAR                A++ + D+LWMET +P++ E R FA G+HA  P + LAYNLSPSFNWDA G+S  E+A FN +LGRLG VWQ    FITLAGFH+DGL  + LA+ Y +
Sbjct:    5 LGALEAEWSAAAGLMRYPEAVARALEAAPDLPDRAGRLARWRAESYGLSHRAAQALAARLLAPSGRAPPAFDWEAPRTREGFYRVKGGIDYSIAR--------------AIAFSPYCDMLWMETHRPHIGEMREFAAGVHAVYPGKMLAYNLSPSFNWDAHGLSAAELARFNADLGRLGVVWQ----FITLAGFHADGLAATTLARAYAQ 196
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A0G4FZ25_VITBC (Isocitrate lyase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FZ25_VITBC)

HSP 1 Score: 204 bits (518), Expect = 5.360e-56
Identity = 105/228 (46.05%), Postives = 141/228 (61.84%), Query Frame = 2 
Query:  593 PLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMR--GLQGRDQRLQEWKSKAYSLSNAEARALSSRL-LGGKQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            PLNE++ +A   G S     KL++ W E A LMRFP  V  A+        + RD  L  W+ +AYSLS+ +A+ L+  L L  +Q+YFDWDAPRSREG++++KGG D  +AR              G A++ ++D+LW ET  PNL + + FA+GIH   PHQ L YN SPSFNW  AGMS +E+  F  E+G+LGF WQ    FITLAGFH +G+ +SR A +Y K
Sbjct:  279 PLNEVMHKADEKGISQAEKQKLNQHWLESANLMRFPACVVKALKEAHFDNEEDRDAALTTWRQQAYSLSHRDAKKLALSLGLTEEQIYFDWDAPRSREGFYRIKGGNDMAVAR--------------GLAFSPYSDMLWFETKTPNLTQCKYFADGIHGTYPHQLLCYNCSPSFNWSTAGMSDEEIQDFQTEIGKLGFAWQ----FITLAGFHCNGMYISRFACDYAK 488
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A7S2L2F9_9STRA (Isocitrate lyase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L2F9_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.240e-55
Identity = 108/218 (49.54%), Postives = 141/218 (64.68%), Query Frame = 2 
Query:  617 ARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSK-AYSLSNAEARALSSRLLG-GKQVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYG 1264
            A+AG  + +A    +K W  KA L  F +AV   I+S+   + R   L  W +    +LSNAEAR ++ RL G    +YFDWDA R REGY++LK G+DYCI R               RAYA +ADL+WMET  P++P+A  F+ G+ +  PHQ LAYNLSPSFNWDA+GM+  E+A FN +LGRLGF WQ    FITLAGFHS+GL+V++LA+ YG
Sbjct:  305 AKAGPGNHDAA---TKAWEAKANLRTFGDAVLDKINSIPNGRTRQNMLNTWNTADPDTLSNAEARRVADRLFGRDNSIYFDWDACRVREGYYRLKAGIDYCIQR--------------ARAYAPYADLIWMETKIPHIPDAAKFSRGVKSMFPHQMLAYNLSPSFNWDASGMTDGELARFNDDLGRLGFAWQ----FITLAGFHSNGLVVTKLARSYG 501
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A7R9U2Z1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Z1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.280e-55
Identity = 115/254 (45.28%), Postives = 149/254 (58.66%), Query Frame = 2 
Query:  539 CTSQQHPPPFHTLTAPPRPLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARAL----------SSRLLGGKQV-YFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            C  + HP      T   RPL E++ EA A GA    I ++ + W ++A LMRF E +E  +     L  +   LQ W+   +   + E   L          +SR+LG K + YFDW+APRSREGY+++KGGVD C+AR              G A+A + DLLWMET KP + +A  F+ GI    PHQ LAYNLSPSFNWDAAGM++ E+A FN  LGRLG+VWQ    FITLAGFH++GL  S LAK Y +
Sbjct:  157 CDPRDHPFIVGATTPGTRPLREVLAEAAAAGAD---IAEVQQRWEDEAQLMRFTELIEREV-----LTRKPAMLQHWQH--FCSDHKEHGGLIVGIGGLQEEASRILGAKNLPYFDWEAPRSREGYYRVKGGVDMCVAR--------------GIAFAPYCDLLWMETKKPIMRDAEEFSTGIKKVHPHQFLAYNLSPSFNWDAAGMTEAELADFNNALGRLGYVWQ----FITLAGFHANGLAASELAKAYAE 382
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: B5YMH1_THAPS (Isocitrate lyase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMH1_THAPS)

HSP 1 Score: 199 bits (507), Expect = 7.590e-55
Identity = 105/227 (46.26%), Postives = 145/227 (63.88%), Query Frame = 2 
Query:  593 PLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAV-EAAIHSMRGLQGRDQRLQEW-KSKAYSLSNAEARALSSRLLGGKQ-VYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYG 1264
            P+NE ++ A A G    A   +  +W  KA  M F EAV +  + S    + +D+  + W  S   +LSNA AR ++  + G K  +YFDW+A R REGY+++K G++YCI R               RAYA +ADL+WMETA P +P+AR F+EG+    P+Q LAYNLSPSFNWDA+GM+  E+A FN +LGRLG+ WQ    FITLAGFHS+GL+V++LA+ +G
Sbjct:  272 PMNEAMKSASASGGGNAA--NMENEWNAKARPMTFGEAVLDKILSSGVSQRKKDEMSRMWYASDPDTLSNANARRIADSIFGAKNSIYFDWEACRVREGYYRVKPGIEYCIQR--------------ARAYAPYADLIWMETATPGIPDARKFSEGVKKVYPNQMLAYNLSPSFNWDASGMTDDELARFNDDLGRLGYTWQ----FITLAGFHSNGLVVTKLARSFG 478
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A7S2PD08_9STRA (Isocitrate lyase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PD08_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.510e-54
Identity = 108/223 (48.43%), Postives = 142/223 (63.68%), Query Frame = 2 
Query:  605 LVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQE-WK-SKAYSLSNAEARALSSRLLGGKQ-VYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYG 1264
            L   A +GGA+   ++K   +W  KA  M F EAV   IHS+    GR + + + W+ S   +LSNA A  ++  + G K  +Y DW+A R REGY+++K G DYCI R               RAYA HADL+WMETA P +P+AR F+EG+    P Q LAYNLSPSFNWDA+GMS  E+A FN +LG+LG+ WQ    FITLAGFHS+GLIV++LA+ +G
Sbjct:  305 LAAAAASGGANATDVEK---EWTAKARPMTFSEAVLDKIHSLHVDGGRKREMVKMWQASDPDALSNASAHRVADSIFGKKNSIYLDWEACRVREGYYRIKPGTDYCIQR--------------ARAYAPHADLIWMETASPGIPDARKFSEGVKKVYPDQMLAYNLSPSFNWDASGMSDAELARFNDDLGKLGYAWQ----FITLAGFHSNGLIVTKLARSFG 506
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BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Match: A0A7R9U2N8_9STRA (Isocitrate lyase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2N8_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.620e-54
Identity = 115/254 (45.28%), Postives = 149/254 (58.66%), Query Frame = 2 
Query:  539 CTSQQHPPPFHTLTAPPRPLNELVREARAGGASFEAIDKLSKDWGEKAGLMRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARAL----------SSRLLGGKQV-YFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHADLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQEMAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK 1267
            C  + HP      T   RPL E++ EA A GA    I ++ + W ++A LMRF E +E  +     L  +   LQ W+   +   + E   L          +SR+LG K + YFDW+APRSREGY+++KGGVD C+AR              G A+A + DLLWMET KP + +A  F+ GI    PHQ LAYNLSPSFNWDAAGM++ E+A FN  LGRLG+VWQ    FITLAGFH++GL  S LAK Y +
Sbjct:  274 CDPRDHPFIVGATTPGTRPLREVLAEAAAAGAD---IAEVQQRWEDEAQLMRFTELIEREV-----LTRKPAMLQHWQH--FCSDHKEHGGLIVGIGGLQEEASRILGAKNLPYFDWEAPRSREGYYRVKGGVDMCVAR--------------GIAFAPYCDLLWMETKKPIMRDAEEFSTGIKKVHPHQFLAYNLSPSFNWDAAGMTEAELADFNNALGRLGYVWQ----FITLAGFHANGLAASELAKAYAE 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13400.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB9_ECTSI5.640e-13490.71Isocitrate lyase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A835YPK9_9STRA1.480e-7757.02Isocitrate lyase n=2 Tax=Tribonema minus TaxID=303... [more]
W7TRS4_9STRA2.950e-6954.42Isocitrate lyase n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7S3XN19_HETAK4.060e-5748.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FZ25_VITBC5.360e-5646.05Isocitrate lyase n=2 Tax=Vitrella brassicaformis T... [more]
A0A7S2L2F9_9STRA1.240e-5549.54Isocitrate lyase n=1 Tax=Leptocylindrus danicus Ta... [more]
A0A7R9U2Z1_9STRA3.280e-5545.28Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B5YMH1_THAPS7.590e-5546.26Isocitrate lyase n=1 Tax=Thalassiosira pseudonana ... [more]
A0A7S2PD08_9STRA2.510e-5448.43Isocitrate lyase n=1 Tax=Skeletonema marinoi TaxID... [more]
A0A7R9U2N8_9STRA3.620e-5445.28Isocitrate lyase n=1 Tax=Pinguiococcus pyrenoidosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13400contigEcto-sp13_S_contig13400:457..4538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score343.6
Seed ortholog evalue6.1e-92
Seed eggNOG ortholog2880.D7FLB9
Preferred nameICL1
Model size1270
KEGG rclassRC00311,RC00313
KEGG koko:K01637
KEGG ReactionR00479
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200
KEGG ModuleM00012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004451,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005975,GO:0006081,GO:0006082,GO:0006083,GO:0006097,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009514,GO:0009987,GO:0015976,GO:0016042,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0031907,GO:0031974,GO:0032787,GO:0042579,GO:0042737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044262,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045733,GO:0046395,GO:0046421,GO:0046459,GO:0046487,GO:0070013,GO:0071704,GO:0072329,GO:1901575
Exons6
EggNOG free text desc.isocitrate lyase activity
EggNOG OGsCOG2513@1,KOG1260@2759
EC4.1.3.1
Cds size582
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13400.2721.1prot_Ecto-sp13_S_contig13400.2721.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13400 1755..4538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.3464289-UTR-Ecto-sp13_S_contig13400:456..5731681462716.3464289-UTR-Ecto-sp13_S_contig13400:456..573Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13400 457..573 +
1681462716.3658412-UTR-Ecto-sp13_S_contig13400:1183..17541681462716.3658412-UTR-Ecto-sp13_S_contig13400:1183..1754Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13400 1184..1754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.376236-CDS-Ecto-sp13_S_contig13400:1754..17691681462716.376236-CDS-Ecto-sp13_S_contig13400:1754..1769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13400 1755..1769 +
1681462716.3868327-CDS-Ecto-sp13_S_contig13400:2051..21891681462716.3868327-CDS-Ecto-sp13_S_contig13400:2051..2189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13400 2052..2189 +
1681462716.3964345-CDS-Ecto-sp13_S_contig13400:2652..27741681462716.3964345-CDS-Ecto-sp13_S_contig13400:2652..2774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13400 2653..2774 +
1681462716.4047365-CDS-Ecto-sp13_S_contig13400:3821..40561681462716.4047365-CDS-Ecto-sp13_S_contig13400:3821..4056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13400 3822..4056 +
1681462716.4132183-CDS-Ecto-sp13_S_contig13400:4466..45381681462716.4132183-CDS-Ecto-sp13_S_contig13400:4466..4538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13400 4467..4538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13400.2721.1

>prot_Ecto-sp13_S_contig13400.2721.1 ID=prot_Ecto-sp13_S_contig13400.2721.1|Name=mRNA_Ecto-sp13_S_contig13400.2721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MRFPEAVEAAIHSMRGLQGRDQRLQEWKSKAYSLSNAEARALSSRLLGGK
QVYFDWDAPRSREGYFKLKGGVDYCIARQEKPLILSSARNCPGRAYAQHA
DLLWMETAKPNLPEARAFAEGIHAAVPHQKLAYNLSPSFNWDAAGMSKQE
MAAFNRELGRLGFVWQASDEFITLAGFHSDGLIVSRLAKEYGK*
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mRNA from alignment at Ecto-sp13_S_contig13400:457..4538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13400.2721.1 ID=mRNA_Ecto-sp13_S_contig13400.2721.1|Name=mRNA_Ecto-sp13_S_contig13400.2721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13400:457..4538+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACAGCCCGGGACGAAGAAGTGTGGGCACATGGGAGGCAAGGTGCTCGT
GTCCATGCAAGAGCACTGTGACCGCCTGGTGGCGGCTAGGCTTCAGGCCG
ACATCATGGGCACCGAGGTGAGAGAGTGCTTCGAGTCGGCACCAAAGAAA
AGAAGAGCTTCGACCGTCACTATCATCACAACTTACCATTCGTAAAAATG
CGTTCTGAAGGCTGTGTTCATCCTACGGAGCCAATGTTGTGCGTTTGTCC
GAGGCTCGGCAATCTTGGTGGCCTTGAACACGCCGGCTGCAATTGCCGCA
ACAGCTAACATTGAAAACGGAGAAGAAATAAATGTGGCGATGATGCAGAG
ACAGCGGTACATAGATACAGAACTACCGCGGAGCAGGACGACAAAAAAAA
CACCCGATTAACGCCTCCTTACCATTCGGTGCCACAAACTTGGTCGCGCG
TGTCATATTGATACTTTACCGATGCCGCATCTCCCGAGCACCCCCACCTT
CGTAATATTCGTTTGTTGTTGTTGCTCTTGTTGTTGTCTTCACCTAAACA
AAACGTTTCCGGTCCCTGCTCAGCAGTTGGTACGCGAACAAAGTGCGTTT
TTTCTTCGACTCGTTGATGCGATGTGCATGTATGTGTATTCTCTGACTGT
TATCATCGTGGCTTGCATGTTTTTACTCGTTGATGTAATGTGATGTCGTG
TGATTTGCATGTTGTGTGCTACCTCAGACTGTCATCGTGGCCCGCACGGA
CGCCGAAGCCGCGTCCTTGCTGGACAACAACGTCGACCCACGTGACCACC
CCTTCATCGTGGGAGCTACTGTCCCAGGCACCAGGCGAGGAGGTTTTTAC
ATTTCTGCCGGTTTCGCGGGGCGTAAGGATTGCATCACTATCATACACAG
CCGCTGGCTCTCTCTCTCACCCACATTCAAACCACACTTGCTTGCACACC
AGGTGGTGGAACGGATTCACTTGAAGTTCGGTGACAAACCTATCTGTGAA
AAAAAGTAATTATGTGATGATGATGCGTTATTGTTGGAGCCAGTTGTAGT
GTAGCTTGAGCTCGCCTTTTGCCCAAGCGCGCGCCTCTCTACTCTGAAAC
AACCGACACAATCTACATTCCGACAGTTCTGTGCCTTGTGTACCATGTTG
TACGTCTCAACAACACCCCCCCCCCTTTCATACACTCACTGCACCCCCCA
GGCCTTTGAACGAGCTCGTCCGCGAAGCACGAGCCGGAGGCGCGTCGTTC
GAAGCTATCGATAAGCTCAGCAAGGATTGGGGCGAGAAAGCCGGCCTCAT
GCGCTTTCCCGAGGTATGTGCATTGAGAGCCTTATGCATGCTGCGTGATG
CAGCATGGGGTTGAGGGTTCACGTAGTACCCGATATTACTCGAAAGAGGC
TTCTAGCATACTATGTCGCGGCGTTCGTGCGCTTGCTAGTTCCTGGATTT
GTTCCCAACCCACGTGAACCGCGTCACGACTGCAAACTCGGGGGCAAGGA
TGACATACGTGTGTTCGTTCGTTTCTTTGAGAACAATGCCCGTACCGTCT
CTGTGTTCTTTCCGCGGGTATTTCTCGACCAAACTCAAAAAAAAGGCCGT
AGAAGCTGCCATCCACTCCATGCGCGGGCTGCAAGGCCGCGATCAGCGGC
TGCAAGAGTGGAAGTCGAAGGCCTACAGCCTGAGCAACGCCGAGGCCAGG
GCTCTGAGCTCTAGGCTTCTTGGCGGCAAGCAGGTGTGCCTGTCGTGCAT
TTTCATTCGTGATTGTTGATTATTTTTTAACTCGCGCTGCTGGCGCCATC
GTAAACGATGCTAGTTTGTTGTTGCGGGGATAGAGCCTCGCGCCCCTGAT
AAACGGGTCCAACGACCACGAGGTGTGCAAGAGTTCGAGCGGAGAGTTTC
AAGTTGTGTGTGGTTCTGCGCATGTTGACCATGCGGCGCGCTGGTGGAAT
GTACCACATTATCAATTGATGAGTGTTGCATCTCCGGCCCGTGTTTTTTC
CGTTCAGACGTTGTCCTTCCGTGCCCGTGGGTAGTTCTTGCGTTTGTTCT
GGTCGGTCCGTGTCTTCTCTGTAGACCCTCTCACGTCGCAAAAAAAATAG
CTACTGCTGTAGTCTCAACGACCGAAAAACGGAGGGAAACACACGAGGAC
GGTCAGACTCTTGACGCGCGCCACCCCTCCCCAACGCCCACGAAAGGTCT
ACTTCGACTGGGATGCACCCCGTAGCCGCGAGGGGTATTTCAAGCTCAAG
GGTGGCGTCGACTACTGCATCGCCAGGCAAGAGAAGCCTTTGATTCTTTC
CTCTGCCCGGAATTGTCCGTCTGATAAAACAGGGGACGGGTTCGAAACCC
CTGGTCGGGGCCCGGGGTTTCCCGTGTATGCCCCGGCGTATGGATGGAGG
TGGAGGGGGGACGAATAGTGAAATTTGCATATATGTCCTTGGGGGTGTCA
ACCTAGGCACGTCAACGGCAGAAGAGCGAATAGCGGAACCCCTCTCCTTC
TCGACGTTGCCTTTTCCCTTCCCTCACCCGTTTGAGAACGTGCCTCACTC
ACGGTCCCAAAATCGGCTTTGCAAAGGTTGGAGTTGAACTATTGAGCAGG
GGACCTTGAGGCTAAAAAAAAGGCAGGGAAAAATTCCAGTGGTAGAACAG
AGGAAGAGATGGCTTGCCCACGTGAAAGGCAGAAGAGAGTAGAACTCACG
CAGTTTGGGGAAGTGGACGATACAACAGGGTGAAGAAATGGAACCGAACA
TGAGAAAGATGCGCGCAGTTTAGTCTCAAGTTCGGCACGTCGGGCAACAT
AGTCAGTGAGAAAATTGCCCAGAGTACCGAAACCATCCGAGGCAAACAGA
GGCTGCGAATCGCGAAGAAAGAGGGGGAGAATAAGGAAGACCAGCAAGAA
TTGTTTGTGTACCCCCGTGCCCACCCACGGAGGTTGCCGTGCCCACCCAC
GGTATGATGTCTGTCAGCGGACTATGTTAACCTAGAGGACCGACGCAGAT
GATAAATATCCTTGATTAACACACACGTGCTCTTCCAGCACAGCATACAC
AGTATCCCTCACAGACGCAGTGAACGCGCGGGCTCTCACGAGGGGCCCCG
CACTTGGAACCCCCAGCGTATCAGCACACACATATTCTCTGCAGATCGGA
TCTTGTATCCAAGCACCCCAAACAAGAATTAACCACTTGCAAAGTATGTC
GTAGAAAGGAAACCGCCAAATGTTTCCTGTTCCTCTACCAGAACACACAC
ACGAACGGCGCTCCGTCTACAAACGTGTTGCGCGGCACGCAACAGATGAG
CACAAAACTCGTGGAACCCCTGCGGTTCGGCTTCTAATTGTCTCTCTCTC
TCGTTCTCTCCACAGGGGGCGTGCCTACGCGCAGCATGCCGACCTGCTGT
GGATGGAGACGGCCAAGCCCAACCTTCCGGAGGCGAGGGCCTTCGCGGAA
GGTATCCACGCCGCGGTGCCTCACCAGAAGCTGGCCTACAACCTCTCGCC
CAGCTTCAACTGGGACGCCGCCGGTATGTCCAAGCAGGAGATGGCCGCGT
TTAACCGGGAGCTGGGCCGCCTGGGCTTCGTGTGGCAGGCAAGCGATGAA
GTAGTCAGGGAGTCAGCCCGTACGCTACCCATGTTGTCGGTCTTCATGGA
AACCAAGACGTTGGCTTCGGGTGCGAGTGAGTTTGGCAGTGTTACTTCGG
TGTCGTCCATGGCAAAAAAACAGTCGATGAAAAGTCAAGCCGGGTGTTGC
TGTGTAGGTCGTACCGAACGGAACATCGAACTTCGAGTCAAGACTATCCG
GAGAGTAGGGGAAACAGAGAAAAACTTGCGCGTCTAACGGAACATAACCG
CTGCCTTCGTGCTGATGTTTCCTTTTCATCTTGGGATCTACCGGTCTAAC
CTTTCCGCCGTTCCCATTCCACCGGTGCTTTCGTGCTGTTGCGTTTTCTG
GCATCTGACGCCATCTACGCCGTGTTCGTCCGAAACCTCACGACCGGCAT
AATGATGCAGTTCATCACCCTGGCAGGCTTTCACTCGGACGGGCTAATTG
TTTCCCGTCTTGCCAAGGAGTACGGAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13400:457..4538+

>mRNA_Ecto-sp13_S_contig13400.2721.1 ID=mRNA_Ecto-sp13_S_contig13400.2721.1|Name=mRNA_Ecto-sp13_S_contig13400.2721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13400:457..4538+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTTTCCCGAGGCCGTAGAAGCTGCCATCCACTCCATGCGCGGGCT
GCAAGGCCGCGATCAGCGGCTGCAAGAGTGGAAGTCGAAGGCCTACAGCC
TGAGCAACGCCGAGGCCAGGGCTCTGAGCTCTAGGCTTCTTGGCGGCAAG
CAGGTCTACTTCGACTGGGATGCACCCCGTAGCCGCGAGGGGTATTTCAA
GCTCAAGGGTGGCGTCGACTACTGCATCGCCAGGCAAGAGAAGCCTTTGA
TTCTTTCCTCTGCCCGGAATTGTCCGGGGCGTGCCTACGCGCAGCATGCC
GACCTGCTGTGGATGGAGACGGCCAAGCCCAACCTTCCGGAGGCGAGGGC
CTTCGCGGAAGGTATCCACGCCGCGGTGCCTCACCAGAAGCTGGCCTACA
ACCTCTCGCCCAGCTTCAACTGGGACGCCGCCGGTATGTCCAAGCAGGAG
ATGGCCGCGTTTAACCGGGAGCTGGGCCGCCTGGGCTTCGTGTGGCAGGC
AAGCGATGAATTCATCACCCTGGCAGGCTTTCACTCGGACGGGCTAATTG
TTTCCCGTCTTGCCAAGGAGTACGGAAAGTGA
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