mRNA_Ecto-sp13_S_contig13388.2709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13388.2709.1
Unique NamemRNA_Ecto-sp13_S_contig13388.2709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13388.2709.1 vs. uniprot
Match: D7FU27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU27_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 5.310e-204
Identity = 317/359 (88.30%), Postives = 325/359 (90.53%), Query Frame = 1 
Query:    1 CAAEVLPGGLSKRSDGELETTTVAEATTHDLLRSPPTSWNPGGDGRGRKPAQSPRSPSRWATSAMDLLTGLTSSSSPPRPLRFSAGSGGGGCARRNSVGGGRAGEGAVAAADGVLLASRVLAGVTEVHAEGVEEALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKWVPDSASETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGRVDPRASRSSRLATTKKAAGVSPPLSEQSSGDNVRGSGGGLRHDPLWALLSKFAQAGTGGADTFLRCPMTVTGEGGGRADLRPSTPQPPRREVAITGTMTGPRTGEGRTARGASVGRGPLVVSVIATLRSGDGRFLEEKALLQV 1077
            C +EVLPGGLSK S G LETTTVAEATT DLLRSPP+SWNPGGDGRGRK AQSPRSPS WATSA DLLTGLTSS SPPRPLRFS GSGGGG  RRNSVGGGR G+GAVAAADGVLLASRVLAGVTEVHA+GVE ALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKK V DSA ETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLG VDPRA RSSRLATTKKAAGVSPPLSEQS G+NVR  GGGLRHDPLWALLS FAQAGTGGADT LR PMTVT EGGGRADLRPSTP  PR EVAITGTM GPR GEG  ARGA+VGRGPLVVSV+ATLRSGDGRF EEKALLQ+
Sbjct:   15 CVSEVLPGGLSKGSGGGLETTTVAEATTRDLLRSPPSSWNPGGDGRGRKAAQSPRSPSTWATSARDLLTGLTSSPSPPRPLRFSVGSGGGGFGRRNSVGGGRPGKGAVAAADGVLLASRVLAGVTEVHADGVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRVLDSALETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGGVDPRAPRSSRLATTKKAAGVSPPLSEQSGGNNVRDGGGGLRHDPLWALLSAFAQAGTGGADTHLRSPMTVTDEGGGRADLRPSTPHSPR-EVAITGTMRGPRAGEGGAARGAAVGRGPLVVSVMATLRSGDGRFQEEKALLQI 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13388.2709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU27_ECTSI5.310e-20488.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13388contigEcto-sp13_S_contig13388:270..2260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1101
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001190.1
Cds size1101
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.3616252-CDS-Ecto-sp13_S_contig13388:269..7461681462715.3616252-CDS-Ecto-sp13_S_contig13388:269..746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 270..746 -
1681462715.4270716-CDS-Ecto-sp13_S_contig13388:994..10841681462715.4270716-CDS-Ecto-sp13_S_contig13388:994..1084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 995..1084 -
1681462715.443263-CDS-Ecto-sp13_S_contig13388:1425..15361681462715.443263-CDS-Ecto-sp13_S_contig13388:1425..1536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 1426..1536 -
1681462715.4535193-CDS-Ecto-sp13_S_contig13388:1837..22601681462715.4535193-CDS-Ecto-sp13_S_contig13388:1837..2260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 1838..2260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13388.2709.1prot_Ecto-sp13_S_contig13388.2709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13388 270..2260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13388.2709.1

>prot_Ecto-sp13_S_contig13388.2709.1 ID=prot_Ecto-sp13_S_contig13388.2709.1|Name=mRNA_Ecto-sp13_S_contig13388.2709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
CAAEVLPGGLSKRSDGELETTTVAEATTHDLLRSPPTSWNPGGDGRGRKP
AQSPRSPSRWATSAMDLLTGLTSSSSPPRPLRFSAGSGGGGCARRNSVGG
GRAGEGAVAAADGVLLASRVLAGVTEVHAEGVEEALALFRRGLRNRRKEG
HVVISARLVSVGGSDKRVDKKWVPDSASETGELVFVELGDCPNGDLPQTL
RTALAHLKVGNHGLGRVDPRASRSSRLATTKKAAGVSPPLSEQSSGDNVR
GSGGGLRHDPLWALLSKFAQAGTGGADTFLRCPMTVTGEGGGRADLRPST
PQPPRREVAITGTMTGPRTGEGRTARGASVGRGPLVVSVIATLRSGDGRF
LEEKALLQVREKSSRK*
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mRNA from alignment at Ecto-sp13_S_contig13388:270..2260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13388.2709.1 ID=mRNA_Ecto-sp13_S_contig13388.2709.1|Name=mRNA_Ecto-sp13_S_contig13388.2709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1991bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13388:270..2260- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCTGCCGAGGTGTTGCCAGGTGGACTTTCGAAACGCAGCGACGGGGA
GTTGGAGACGACGACAGTGGCAGAGGCAACCACGCATGACCTGCTGCGAT
CGCCGCCTACTTCTTGGAATCCTGGCGGCGATGGCAGAGGTAGGAAGCCG
GCGCAGTCGCCGCGCTCTCCGAGCAGGTGGGCGACATCGGCGATGGACTT
GCTGACGGGTTTGACGTCGTCTTCTTCACCTCCTCGCCCCTTACGGTTCT
CTGCCGGAAGTGGCGGCGGAGGTTGCGCGCGCCGAAACTCGGTGGGAGGA
GGACGAGCAGGAGAAGGAGCGGTGGCCGCCGCGGACGGGGTGTTGTTGGC
GTCGCGTGTGCTGGCTGGAGTTACCGAGGTCCACGCGGAAGGGGTTGAGG
AAGCTCTCGCGTTGTTCCGGCGGGTGAGAATAAGCGGTGGTGTTTGAAGG
GGCGAGTTGCATGTGGTACCGCTTTTCTCGTGGCTTGCCCTCTGAGCTGT
CTTGCGAAGAGCGCACTTCACGGTCACCCTCTTTCGGTTTTCGAACTCGG
TGGCCGCACATATCTCGATACGCTTGCACCAATGACCGCCAGAATACACC
AATAATAGCAAGGATGCGTCTGAACGGCCCGAAATGTGTGGAGTTTCCGT
CGCTGACGCAGCTACACGCCCGTATCTGTCCGACACCTTGCGGCCCGCTC
CTCGCTGTACCCTCTTCGATGTAGGGCCTCCGGAACCGCCGCAAGGAAGG
TCATGTTGTCATCTCCGCGAGACTAGTCTCGGTGGGCGGCAGTGACAAGC
GTGTCGACAAGAAATGGGTGCCGGATAGTGCGTCGGTGAGATTCGTGTAC
CGTTGTGCTGACGTTGGCTCTAGCTTTGTTGCACGTGTGTAGGTGAGGGG
TTCTGCCTGTCCATTTTGCTTTGTCAGACTTGGGGGCGGCTTGTGCAGGC
AAGGGCGGTAGATATCAGCCGGGATCGACAGGTGCGGCCAATTTGTCGCT
TGTGGTTGCTTCGGTGAGTGATGAAGTAAACCATTCCAATAAGAAACATG
ACTAGGTGCCTCATGGCGGGGGAGAAAAGTTGAATTGCAAATATACATGC
AGGGCGGCACTCGATTTTGCACTTCAGGATGCTGGTCATGAACCGATCAC
CCGCCCCCTCTTCCCCTTTGCATCAGGAAACGGGGGAGCTGGTGTTCGTC
GAGCTTGGCGATTGCCCAAACGGTGATCTTCCCCAGACGCTCCGGACTGC
ACTGGCACACCTCAAGGTACGCGAACAAATCCCGCATACTTCTGAAACGT
TGCTGTTGTACTATTTTGTGCACCTGCCCTCCCCTACCCACTCCTTGCGT
CACCGGCTGCCAAGCGTCAAGAATCCCGAGTAGTATGTGTGTGAGAGGCG
CCAGTGCTGACGCGCACCTGCCCTCCCTCTGCCGAAACCGTGTCCCGCCG
TACGCACACCTCCCGTTTGATTGAAACAACGAAACGACGCGCACTCCTAC
GGCGGCAACAACAGGTCGGAAACCATGGTCTAGGAAGAGTGGACCCCCGA
GCGTCTAGATCATCACGACTAGCGACCACGAAGAAGGCAGCAGGCGTGTC
GCCGCCGCTGAGTGAGCAGAGTAGCGGTGACAACGTTCGCGGTAGCGGTG
GCGGTCTCCGCCATGACCCGTTGTGGGCGCTCTTGAGCAAGTTCGCCCAG
GCCGGAACCGGGGGGGCGGACACCTTTTTGAGGTGTCCCATGACGGTGAC
AGGCGAAGGAGGCGGTAGAGCTGACTTGCGGCCATCAACGCCGCAACCTC
CCAGGAGAGAGGTAGCGATAACGGGTACCATGACGGGCCCAAGGACAGGG
GAGGGGAGGACGGCGAGGGGAGCGTCGGTGGGGAGGGGCCCGCTCGTAGT
GTCGGTCATCGCCACGCTGCGCTCGGGAGACGGCCGCTTTCTGGAAGAGA
AGGCCTTGCTCCAGGTGAGAGAGAAAAGCAGCAGAAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13388:270..2260-

>mRNA_Ecto-sp13_S_contig13388.2709.1 ID=mRNA_Ecto-sp13_S_contig13388.2709.1|Name=mRNA_Ecto-sp13_S_contig13388.2709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13388:270..2260- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCTGCCGAGGTGTTGCCAGGTGGACTTTCGAAACGCAGCGACGGGGA
GTTGGAGACGACGACAGTGGCAGAGGCAACCACGCATGACCTGCTGCGAT
CGCCGCCTACTTCTTGGAATCCTGGCGGCGATGGCAGAGGTAGGAAGCCG
GCGCAGTCGCCGCGCTCTCCGAGCAGGTGGGCGACATCGGCGATGGACTT
GCTGACGGGTTTGACGTCGTCTTCTTCACCTCCTCGCCCCTTACGGTTCT
CTGCCGGAAGTGGCGGCGGAGGTTGCGCGCGCCGAAACTCGGTGGGAGGA
GGACGAGCAGGAGAAGGAGCGGTGGCCGCCGCGGACGGGGTGTTGTTGGC
GTCGCGTGTGCTGGCTGGAGTTACCGAGGTCCACGCGGAAGGGGTTGAGG
AAGCTCTCGCGTTGTTCCGGCGGGGCCTCCGGAACCGCCGCAAGGAAGGT
CATGTTGTCATCTCCGCGAGACTAGTCTCGGTGGGCGGCAGTGACAAGCG
TGTCGACAAGAAATGGGTGCCGGATAGTGCGTCGGAAACGGGGGAGCTGG
TGTTCGTCGAGCTTGGCGATTGCCCAAACGGTGATCTTCCCCAGACGCTC
CGGACTGCACTGGCACACCTCAAGGTCGGAAACCATGGTCTAGGAAGAGT
GGACCCCCGAGCGTCTAGATCATCACGACTAGCGACCACGAAGAAGGCAG
CAGGCGTGTCGCCGCCGCTGAGTGAGCAGAGTAGCGGTGACAACGTTCGC
GGTAGCGGTGGCGGTCTCCGCCATGACCCGTTGTGGGCGCTCTTGAGCAA
GTTCGCCCAGGCCGGAACCGGGGGGGCGGACACCTTTTTGAGGTGTCCCA
TGACGGTGACAGGCGAAGGAGGCGGTAGAGCTGACTTGCGGCCATCAACG
CCGCAACCTCCCAGGAGAGAGGTAGCGATAACGGGTACCATGACGGGCCC
AAGGACAGGGGAGGGGAGGACGGCGAGGGGAGCGTCGGTGGGGAGGGGCC
CGCTCGTAGTGTCGGTCATCGCCACGCTGCGCTCGGGAGACGGCCGCTTT
CTGGAAGAGAAGGCCTTGCTCCAGGTGAGAGAGAAAAGCAGCAGAAAGTA
A
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