mRNA_Ecto-sp13_S_contig13370.2692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13370.2692.1
Unique NamemRNA_Ecto-sp13_S_contig13370.2692.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13370.2692.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 6.300e-45
Identity = 112/297 (37.71%), Postives = 162/297 (54.55%), Query Frame = 1 
Query:   88 FAHLLRPIDGADDLHAVLGGFGSMCSCEGIREGN-PALAGGKGFRNIVTRAIRTALPQDADEVVALGSLPGFGTDGGCSATLHAV----GDEHVICSSRCTSWVKPDPADVCKSPVDAPVLSGPCSRYLQKTFIPGATKASSSDYNNKTPNVRLSTPQQARKLEDVAKEMRDMRKVKYQVKLEPCREDDIVLNSTEPQGRALFDALEHPRVKPVFNRI--PEDSLAKAVL-----------EENYEWNKRQGSSKGWRYNPKVLRWAVYTLARIGGSGYEILREVLQLPVASHVRKL 924
            F+ L  PI  + DLH VLG  G +  CEG+RE + P    G  F + VTR+IR      A EV ALG +   G  G  + TLH+V    G+E V+ S++   +          +    P +   C  + ++  +    K S    + +T N  LSTPQQ  KL +++K+ + MR   ++ KL  CREDDI++ + E QG+ LFD L+H  ++    R+    D+++ ++            ++NYEWN+  GS KGWRYNPKVLRWA+Y + R G S YE+LREVL LP   HVRK+
Sbjct:   28 FSTLSFPIKMSADLHRVLGEAGRVFVCEGVRESHLPGDVRGS-FGSYVTRSIRVLRKDQAVEVAALGVINSVG--GEEAGTLHSVCGPHGEEFVLYSTKYVCFET--------AVTQIPFVCAACLSFRKRGVVEWLRKRS-EPVDQRTNNRFLSTPQQVDKLRELSKDKKGMRMQLHRAKLAKCREDDIIIPAEEDQGQQLFDLLQHDDIQNKGERLCNQNDAISASITTTCVRFGTSLSQDNYEWNRVNGSKKGWRYNPKVLRWALYAMHRCGSSAYEVLREVLHLPDPRHVRKI 312
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BLAST of mRNA_Ecto-sp13_S_contig13370.2692.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.390e-30
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:  607 QVKLEPCREDDIVLNSTEPQGRALFDALE-HPRVKPVFNRIPEDSLAKAVLEENYEWNKRQGSSKGWRYNPKVLRWAVYTLARIGGSGYEILREVLQLPVASHVRKLRGAAGYDFKPKLQAQNIEAYGKIAAADD 1008
            +V+L  CREDD+V+ +   QGR L + L  +P VK VF R+PE SLA+AV+EE   +N+ +GS+KGWR+N KVLRWA Y LA++GG+GY++LR+VL LP   HV+K+  AA    K   Q   IEA+ K+A  D+
Sbjct:  220 EVQLRRCREDDVVIAADNEQGRRLHETLSGNPDVKDVFARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIV-AASTSTKMGEQYHLIEAFAKMACEDN 353
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BLAST of mRNA_Ecto-sp13_S_contig13370.2692.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.190e-18
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  772 WNKRQGSSKGWRYNPKVLRWAVYTLARIGGSGYEILREVLQLPVASHVRKLRGAAGYDFKPKLQAQNIEAYGKIAAADD 1008
            +NK QGSSKGWR++PKVLRWA+Y LA +G +GY ++++VL LP   H+RK+R AA       +Q   +EAYGK+AA D+
Sbjct:    4 YNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDN 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13370.2692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K071_9PHAE6.300e-4537.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.390e-3050.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE7.190e-1853.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13370contigEcto-sp13_S_contig13370:2243..4498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1013
Hectar predicted targeting categoryother localisation
Exons5
Cds size855
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13370.2692.1prot_Ecto-sp13_S_contig13370.2692.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13370 2243..4146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.1803155-CDS-Ecto-sp13_S_contig13370:2242..22751681462714.1803155-CDS-Ecto-sp13_S_contig13370:2242..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 2243..2275 -
1681462714.1900496-CDS-Ecto-sp13_S_contig13370:2423..26421681462714.1900496-CDS-Ecto-sp13_S_contig13370:2423..2642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 2424..2642 -
1681462714.2083037-CDS-Ecto-sp13_S_contig13370:3273..34831681462714.2083037-CDS-Ecto-sp13_S_contig13370:3273..3483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 3274..3483 -
1681462714.222802-CDS-Ecto-sp13_S_contig13370:3753..41461681462714.222802-CDS-Ecto-sp13_S_contig13370:3753..4146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 3754..4146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.232549-UTR-Ecto-sp13_S_contig13370:4146..41671681462714.232549-UTR-Ecto-sp13_S_contig13370:4146..4167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13370 4147..4167 -
1681462714.2424812-UTR-Ecto-sp13_S_contig13370:4363..44981681462714.2424812-UTR-Ecto-sp13_S_contig13370:4363..4498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13370 4364..4498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13370.2692.1

>prot_Ecto-sp13_S_contig13370.2692.1 ID=prot_Ecto-sp13_S_contig13370.2692.1|Name=mRNA_Ecto-sp13_S_contig13370.2692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MCSCEGIREGNPALAGGKGFRNIVTRAIRTALPQDADEVVALGSLPGFGT
DGGCSATLHAVGDEHVICSSRCTSWVKPDPADVCKSPVDAPVLSGPCSRY
LQKTFIPGATKASSSDYNNKTPNVRLSTPQQARKLEDVAKEMRDMRKVKY
QVKLEPCREDDIVLNSTEPQGRALFDALEHPRVKPVFNRIPEDSLAKAVL
EENYEWNKRQGSSKGWRYNPKVLRWAVYTLARIGGSGYEILREVLQLPVA
SHVRKLRGAAGYDFKPKLQAQNIEAYGKIAAADDA
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mRNA from alignment at Ecto-sp13_S_contig13370:2243..4498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13370.2692.1 ID=mRNA_Ecto-sp13_S_contig13370.2692.1|Name=mRNA_Ecto-sp13_S_contig13370.2692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2256bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13370:2243..4498- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTCTATGGCGTTCCCGATGCCGTCGGGAACTCTCTCAGTCTCCAACG
TCACGATACGTGGAGTTGACGTGACTCAATCTCGGAGTTCGCTCATCTCC
TACGTCCTATCGACGGAGCCGACGACCTCCACGCGGTGAGCGCCACGGTT
TGTTCTGTTCTTCGCTCGTACAAATGCAGTGCGGTTGCGATTGAAGCCCC
ATCCTCTCTTTTGTTTAAAAGTATTGCACAAGGCGCATCACCGCAGATGA
AGGTGCGTTGGTTATATACCATCTCTACTCCCCCATCGAAGAGCTAACAT
TATCATTGCGTCTGTCGAAACATGTGTCCAGGTTCTAGGAGGATTCGGTA
GCATGTGTTCGTGTGAAGGAATCCGGGAAGGCAACCCCGCGCTGGCAGGA
GGCAAAGGGTTCCGTAATATCGTCACTCGGGCCATACGGACAGCCTTGCC
GCAGGATGCCGACGAGGTGGTGGCGCTTGGGAGCTTACCTGGATTCGGGA
CGGATGGAGGATGTTCAGCTACCCTGCACGCTGTCGGAGATGAGCACGTG
ATCTGTTCTTCACGCTGCACGTCCTGGGTAAAACCTGATCCCGCAGACGT
ATGCAAGAGTCCAGTAGATGCTCCGGTTCTTAGCGGCCCCTGCTCTCGGT
ATCTTCAAAAGACATTCATCCCTGGGGCGACAAAGGCATCTTCTTCGGAT
TACAACAACAAAACACCGAACGTTCGACTCTCCACACCACAGCAGGTTAA
TTTAAGAAGGCATTATATCTTGTGTTTTTTTCATCTCCCTTCCTGTGCGA
TCGTGAGTAAGACAGTACATCCCTGCATATGAACCTCCCATCCAAGGTCC
TCTTGTGTTCCCTTGTTGGGGTAGTTGATCAGCGTTGGTTATTTTGTGTC
GCCTGTGCTGATGACTCACCGCCCTTTCATATTGCACATAAGCACACCCA
AAGAAATGTAAGGTTGATGAGTTGCTGCTACCATTCCCCTCGGCCTCCGT
TGCAATACATTGCAGGCCCGGAAGCTTGAGGATGTCGCGAAGGAAATGCG
CGATATGCGAAAGGTAAAGTACCAAGTGAAATTGGAACCGTGCCGTGAGG
ACGACATCGTACTCAACTCCACTGAACCGCAGGGCCGCGCCCTTTTCGAT
GCTTTGGAACACCCGAGAGTGAAGCCAGTCTTTAACAGGATCCCAGAAGA
CAGCTTAGCAAAAGCTGTTCTGGAGGTGAGCGCGAGCATTCTTTGCCGAT
GCAACAAGCGTGCCTCTAGTGGCTTGATGCGTATGAAGGCGTTTGGTTTT
TTGTAGTGATCAGTTGCATCACAGTTGGGTTGGTGCTCCTGCTACAGATA
AGCCTGTAGCGTTAGTCTGTAGCGTCATGTCCTTCGGCACAGAATTCTTT
CGAAAATCTTGAGGGTGTTTTTAGATTTTTGTCAACGTTTTTTTTTTTCG
TTTTGCGTATTACCCTGCATGGGTCATCGGCCGAAACAAAAAAAGAGACG
GCCCAAAAACTGTCAAATTTTTGGCACATTTCAGCGGGGGATACAGGGAC
AAATACATTACATTTCCAAAGACACCAAAACCGACGATATTTCTGAGAAA
TGTTTTTATTCATCACACCGTCAGCGCTTCATCTTTGCCGCGAGACCAAT
TTCATTGTCATGGGAACTACCGTTTTGCCTCAAACACTTTTCGCCCGAAA
CACTACTTGCTTACGGGACAGAGGAAGCATGCTGTTTCGTAGTCGAGGCT
GTCGTTGTAACATTTAGAATTTGTAGCCCGCACGATGGCGACTCCTTTTT
GCACGGGTTCCGATTATTGTATGCCGGATGCATGCTCTTCGACCTCTCCG
TTGAAGGAAAACTACGAGTGGAACAAGAGGCAGGGATCCTCCAAGGGTTG
GCGGTACAACCCCAAAGTCCTCCGCTGGGCAGTTTATACGCTAGCCAGGA
TTGGGGGGTCTGGGTATGAGATCTTACGGGAGGTTCTCCAGCTCCCAGTC
GCGAGCCACGTCCGGAAGCTACGGGGTGCCGCCGGCTACGACTTCAAGCC
AAAACTTCAGGCTCAAAATATCGAGGTGCGGGGGATACGAACCGGGATTC
AACGCCTTCATTTTGTTCCATTTTCCTGTGCGTGCTGTGGCCCACATGTT
GCCATTTTTTTTTCTCTTACCCCTCTTTCCTCTATCTCGTGGCCCCATTG
CAATGTATGCAACCCTTGCGCAGGCATATGGCAAGATTGCAGCGGCCGAT
GACGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13370:2243..4498-

>mRNA_Ecto-sp13_S_contig13370.2692.1 ID=mRNA_Ecto-sp13_S_contig13370.2692.1|Name=mRNA_Ecto-sp13_S_contig13370.2692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13370:2243..4498- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCGTGTGAAGGAATCCGGGAAGGCAACCCCGCGCTGGCAGGAGG
CAAAGGGTTCCGTAATATCGTCACTCGGGCCATACGGACAGCCTTGCCGC
AGGATGCCGACGAGGTGGTGGCGCTTGGGAGCTTACCTGGATTCGGGACG
GATGGAGGATGTTCAGCTACCCTGCACGCTGTCGGAGATGAGCACGTGAT
CTGTTCTTCACGCTGCACGTCCTGGGTAAAACCTGATCCCGCAGACGTAT
GCAAGAGTCCAGTAGATGCTCCGGTTCTTAGCGGCCCCTGCTCTCGGTAT
CTTCAAAAGACATTCATCCCTGGGGCGACAAAGGCATCTTCTTCGGATTA
CAACAACAAAACACCGAACGTTCGACTCTCCACACCACAGCAGGCCCGGA
AGCTTGAGGATGTCGCGAAGGAAATGCGCGATATGCGAAAGGTAAAGTAC
CAAGTGAAATTGGAACCGTGCCGTGAGGACGACATCGTACTCAACTCCAC
TGAACCGCAGGGCCGCGCCCTTTTCGATGCTTTGGAACACCCGAGAGTGA
AGCCAGTCTTTAACAGGATCCCAGAAGACAGCTTAGCAAAAGCTGTTCTG
GAGGAAAACTACGAGTGGAACAAGAGGCAGGGATCCTCCAAGGGTTGGCG
GTACAACCCCAAAGTCCTCCGCTGGGCAGTTTATACGCTAGCCAGGATTG
GGGGGTCTGGGTATGAGATCTTACGGGAGGTTCTCCAGCTCCCAGTCGCG
AGCCACGTCCGGAAGCTACGGGGTGCCGCCGGCTACGACTTCAAGCCAAA
ACTTCAGGCTCAAAATATCGAGGCATATGGCAAGATTGCAGCGGCCGATG
ACGCG
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