mRNA_Ecto-sp13_S_contig13320.2660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13320.2660.1
Unique NamemRNA_Ecto-sp13_S_contig13320.2660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 602 bits (1553), Expect = 7.640e-200
Identity = 396/477 (83.02%), Postives = 402/477 (84.28%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETAPRGSQSRTSRSSTAQANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGGDKAAGGESGXXXXXRAGAQEYDSD--EEEEESDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGSPGAEGDNDDQEATQRSSGXXXXXXXXXXXXXXXXXXXXXXXXX----VTKSRVAGAMAALEASVKKKTKTMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1413
            +VGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTK+NRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVG+GTILNNYAHIFDILIRLRQAVDHPYLVI+SATKREGMTPAMNSAAGQNPT  PAPPAETAPRGSQSRTSRSSTAQANGAA                                XXX        AG    XXXXX    QE DSD        DLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGG+PGAEGD+D     QR   XXXXXXXXXXXXXXXXXXXXXXXXX      KSRVAG MAALEASVKKKTKTMKPAASGG GVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ
Sbjct:  807 RVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGAGTILNNYAHIFDILIRLRQAVDHPYLVIFSATKREGMTPAMNSAAGQNPTAVPAPPAETAPRGSQSRTSRSSTAQANGAATPNGGRSSCSSSSRTATAGTQADILGDTSSDSXXXXXXXXXXXAGXXXXXXXXXXXXVQECDSDGXXXXXXXDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGNPGAEGDDDXXXXXQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAKSRVAGVMAALEASVKKKTKTMKPAASGGDGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1283
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: D7G7X0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X0_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 1.270e-163
Identity = 370/410 (90.24%), Postives = 376/410 (91.71%), Query Frame = 1 
Query:  199 RTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETAPRGSQSRTSRSSTAQANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGGDKAAGGESGXXXXXRAGAQEYDSDEEEEESDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGSPGAEGDNDDQEATQRSSGXXXXXXXXXXXXXXXXXXXXXXXXXVTKS----RVAGAMAALEASVKKKT-KTMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1413
            RTGYVGEGKKAFLRLKREVLDMILLRRTK+NRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAET PRGSQSRTSRSSTAQANGAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDA GG KAAG ++G     RAGAQEYDSDEEEE SDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGSPGAEGD+           XXXXXXXXXXXXXXXXXXXXXXXXX        RVAGAMAALEAS+K    +TMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ
Sbjct:   20 RTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETTPRGSQSRTSRSSTAQANGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAEGGGKAAGAQNGAGAGGRAGAQEYDSDEEEE-SDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGSPGAEGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAGAMAALEASMKXXXXQTMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 428
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 301 bits (771), Expect = 6.330e-88
Identity = 198/481 (41.16%), Postives = 243/481 (50.52%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETAPRGSQSRTSRSSTAQANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGGDKAAGGESGXXXXXRAGAQEYDSDEEEEESDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXX-PLTVDLSGGSPGAEGDNDDQEA--------TQRSSGXXXXXXXXXXXXXXXXXXXXXXXXXVTKSRVAGAMAALEASVKKKTKTMKPAASGGGGVK-RSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1413
            +VGELYSLVRFLR+DPHAFY CR KGC+CKSLNYRFGP W  CE CGHTP+ H+A+FNRHILNPI R GY+GEG+KAFL LK E+LD ILLRRTK  RS DI LPPR++++R   +DEREEDFYQALYTQSQAQF+TY+ +GT+LNNYAHIFDILIRLRQAVDHPYLVI+S                                   +RT+                                                     A GG +G         +E D   EEE    C +C EP E LV + CG  F                        PLTVDLS      EG  ++++A        T+R +G                            S  AG +                     G +K + + + S+++RI L  FQ+STK+EAL+EE++LM  RDP+AKAIVFSQ
Sbjct:  672 RVGELYSLVRFLRMDPHAFYFCRMKGCECKSLNYRFGPNWDCCECCGHTPMWHFAHFNRHILNPIQRAGYIGEGRKAFLTLKNEILDPILLRRTKETRSEDIMLPPRLIKLRHDPMDEREEDFYQALYTQSQAQFNTYLQTGTVLNNYAHIFDILIRLRQAVDHPYLVIHS----------------------------------HARTNTG---------------------------------------------------AEGGTAGPTSTDEE--KELDDXXEEE----CALCHEPVENLVRAECGCGFCRLCVTEYLEASLGGTTSCPECSRPLTVDLSK----REGQQEEEDASKGRAQSRTRRQNGNGKH------------------------SNAAGTVCV------------------AGKLKLQGLDRKSILHRIQLENFQTSTKLEALLEELYLMRTRDPSAKAIVFSQ 1015
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: D7FUS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS8_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 3.520e-80
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    4 VGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREE 363
            VGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTK+NRSNDICLPPRIVRVRQHRLDEREE
Sbjct:    4 VGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREE 123
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.450e-74
Identity = 197/486 (40.53%), Postives = 246/486 (50.62%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETAPRGSQSRTSRSSTAQANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGGDKAAGGESGXXXXXRAGAQEYDSDEEEEESDLCGICREPAERLVSS-SCGHSFXXXXXXXXXXXXXXXXXXXXXXX--------------PLTVDLSGGSPGAEGDNDDQEATQRSSGXXXXXXXXXXXXXXXXXXXXXXXXXVTKSRVAGAMAALEASVKKKTKTMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1413
            +VGELYSL+RFLR+DPHAFY CR+KGC CKSL+YRF   +  C++C H+ I HY +FN+HILNPI R+GYV +G++A L+LK++VLD ILLRRTKT R+ DI LPPR+V VR  +LD +EEDFY ALYTQSQAQF+TY+ SGT+LNNYAHIFDILIRLRQAVDHPYLVIYS                          A+ A +         S    NG                                     DA      + G SG                       C +C EP+E  VSS SC H+F               XXXXXXXX              PLT+ L   SP        + A +RSS                          V  S   GA A  E   ++ + ++  A  G       +++ S+++++DLN FQSSTK+EALMEE+H M   D  AKAIVFSQ
Sbjct:  976 RVGELYSLIRFLRVDPHAFYYCRTKGCCCKSLHYRFTKSY--CDDCHHSVIQHYCHFNKHILNPIKRSGYVADGRRAMLKLKQQVLDEILLRRTKTTRAEDIQLPPRVVTVRSEKLDVKEEDFYSALYTQSQAQFNTYLQSGTVLNNYAHIFDILIRLRQAVDHPYLVIYSE-------------------------AQVAKQDDSENYLNLSNNNTNG------------------------------------NDAVKIKTESNGVSGGN---------------------CDLCHEPSEDPVSSTSCDHTFCRLCITDYIGSVSTSXXXXXXXXXXXXXGLRCPDCDQPLTIQLLPSSPSTTTGVASRGANRRSSSNGRNGSSVA----------------VDVSSGDGADAVTEDQQQQDSVSVWNATKG-------LSRKSILDKVDLNLFQSSTKIEALMEELHKMQSEDLGAKAIVFSQ 1354
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 261 bits (667), Expect = 3.930e-74
Identity = 121/167 (72.46%), Postives = 142/167 (85.03%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYL 501
            +V ELYS +RFLR+DP A+Y C++KGC CKSL+YRFGPE R CEECGH P+ H   FNR +LNPI R GY+GEG++AF+ LK EVLD ILLRRTK  RS+DI LPPR+VRVR++RL E+EEDFYQALYTQSQAQFD YV +G +LNNYAHIFDILIRLRQA+DHPYL
Sbjct:  566 RVSELYSPIRFLRMDPFAYYVCKAKGCACKSLHYRFGPEGRKCEECGHNPMTHSCTFNRLVLNPIMRAGYIGEGRRAFITLKSEVLDKILLRRTKATRSDDIALPPRVVRVRRYRLSEKEEDFYQALYTQSQAQFDDYVNTGVVLNNYAHIFDILIRLRQALDHPYL 732
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A1Y1IBP8_KLENI (Putative SNF2 family N-terminal domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBP8_KLENI)

HSP 1 Score: 247 bits (630), Expect = 6.420e-69
Identity = 115/173 (66.47%), Postives = 143/173 (82.66%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSAT 519
            +VGELYSLVRFLR+DP+A+Y C  K CDCKSL+YRFG +WR C++CGH+P+ H+  +N+++ NPI + GYVGEG+KA LRLK +VLD  LLRRTK  R+ D+ LPPR   +R+   D RE DFY+ALYTQSQ+QF TYV SGT+LNNYAHIFD+LIRLRQAVDHPYLV++SAT
Sbjct:  569 RVGELYSLVRFLRMDPYAYYFC--KKCDCKSLDYRFGKDWRKCDDCGHSPLHHFCWWNKYVANPIKKFGYVGEGRKAMLRLKAKVLDSALLRRTKVERAADLALPPRCTLLRKDAFDPREADFYEALYTQSQSQFATYVDSGTVLNNYAHIFDLLIRLRQAVDHPYLVVHSAT 739
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A7S1FQR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQR8_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.220e-67
Identity = 110/181 (60.77%), Postives = 139/181 (76.80%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPA 543
            +VGE YSLVRFLR+DP A Y CR+KGCDCKSL+YRF  E   C++CGH+ + H++ FNRHILNPI R GY G+G++A L+LKREVLD  LLRRTK  R++D+ LPPR+V ++   L   EEDFY ALYTQ ++ FD YV +GTILNNYAHIFD+L+R+RQAV HPYLV++    +   T A
Sbjct:  181 RVGEFYSLVRFLRIDPMAHYFCRAKGCDCKSLHYRF--EHGKCKDCGHSAMQHFSYFNRHILNPIQRDGYAGDGRRAMLKLKREVLDQALLRRTKDTRAHDLFLPPRVVEIKTVALHPIEEDFYNALYTQGKSTFDDYVTNGTILNNYAHIFDLLMRMRQAVGHPYLVVHGKKSQTNQTQA 359
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A7S0JIU8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIU8_9EUKA)

HSP 1 Score: 231 bits (589), Expect = 3.770e-66
Identity = 105/171 (61.40%), Postives = 135/171 (78.95%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYS 513
            +VGELYSLV+FLR+DP+A+Y C+  GC CK   YRF  E+R C  CGHTP+ HY+ FNR ++NPI + GYVG G+  FL LKR+VLD +LLRRTK  R++++ LPP++V +  + LDERE DFYQA+YTQS A+F  YV +GT+LNNYAHIFD+L RLRQA DHPYLV++S
Sbjct:   89 RVGELYSLVQFLRVDPYAYYFCKVDGCSCKCREYRFDDEYRKCLYCGHTPLQHYSLFNRDVVNPIRKFGYVGAGRNGFLTLKRDVLDKVLLRRTKAGRADEMVLPPKVVTIEANFLDEREHDFYQAIYTQSVAEFGAYVQAGTLLNNYAHIFDLLTRLRQATDHPYLVLHS 259
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BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Match: A0A8J4FVQ8_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FVQ8_9CHLO)

HSP 1 Score: 233 bits (594), Expect = 9.400e-66
Identity = 194/474 (40.93%), Postives = 237/474 (50.00%), Query Frame = 1 
Query:    1 KVGELYSLVRFLRLDPHAFYQCRSKG--CDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAETAPRGSQSRTSRSSTAQANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGGDKAAGGESGXXXXXRAGAQEYDSDEEEEESDLCGICREPAERLVSSSCGHSFXXXXXXXXXXXXXXXXXXXXXXXPLTVDLSGGSPGAEGDNDDQEATQRSSGXXXXXXXXXXXXXXXXXXXXXXXXXVTKSRVAGAMAALEASVKKKTKTMKPAASGGGGVKRSVTKHSVINRI-DLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQ 1413
            +V ELYSL+RFLR+ P+A+Y CR  G  C C SL+Y F    R C+ C H+P+ HY  +NR + NPI   GY G G+ A + LK  +L  ILLRRTK   ++D+ LPPR V +R+ R DE EED+YQALYTQSQAQF  YV SGT+LNNYAHIFD+LIRLRQAVDHPYLVI+SAT    +     +  G   +PA              +  R +T  A  AA                                     G G  AAG   G                    + +CG+C E  E  V + CGH F                       PLTVDL+   PG              +GXXXXXXXXXXXXXXXXXXXXX       +    A AAL                  G +     K S++NRI DL +F +STK+EAL EE+  MM RDP+AKAIVFSQ
Sbjct:  145 RVAELYSLIRFLRIYPYAYYFCRKAGAACGCSSLDYPFTRHHRQCDLCSHSPLSHYCWWNRFVANPIKAHGYSGRGRTALMLLKNRILPAILLRRTKVQCADDLALPPRTVLLRRDRFDELEEDYYQALYTQSQAQFGAYVESGTLLNNYAHIFDLLIRLRQAVDHPYLVIFSATATAAVDRGSGAGGGSVKSPA-------------EQRDRGATTAAAAAAPDTVVHLGAY---------------------------GSGGGAAGPTGGGLA-----------------APICGLCHEEIEDGVVAGCGHGFCRTCVIEYVEGAVKTAKCPQCSKPLTVDLT--VPGT---------LPVIAGXXXXXXXXXXXXXXXXXXXXXLRCSWPPAGGTAAAAAL------------------GVLGYRPRKQSILNRIGDLTRFMTSTKIEALREELDRMMARDPSAKAIVFSQ 532
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13320.2660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE7.640e-20083.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X0_ECTSI1.270e-16390.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TXY3_9STRA6.330e-8841.16Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
D7FUS8_ECTSI3.520e-8099.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3MHT9_9STRA2.450e-7440.53Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836CRA2_9STRA3.930e-7472.46P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1IBP8_KLENI6.420e-6966.47Putative SNF2 family N-terminal domain containing ... [more]
A0A7S1FQR8_9STRA2.220e-6760.77Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0JIU8_9EUKA3.770e-6661.40Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A8J4FVQ8_9CHLO9.400e-6640.93Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13320contigEcto-sp13_S_contig13320:281..4752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score490.7
Seed ortholog evalue7.5e-136
Seed eggNOG ortholog2880.D7G7X0
Preferred nameRAD16
Model size1413
KEGG koko:K08066,ko:K12850,ko:K15083
KEGG Pathwayko03040,ko04612,ko05152,map03040,map04612,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000113,GO:0000151,GO:0000166,GO:0000715,GO:0000720,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004842,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006290,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019787,GO:0030554,GO:0031461,GO:0031463,GO:0032392,GO:0032446,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0061630,GO:0061659,GO:0070035,GO:0070647,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990391
Exons6
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
Cds size1413
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03041,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13320.2660.1prot_Ecto-sp13_S_contig13320.2660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13320 281..4752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.8560212-CDS-Ecto-sp13_S_contig13320:280..4771681462711.8560212-CDS-Ecto-sp13_S_contig13320:280..477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 281..477 +
1681462711.8663588-CDS-Ecto-sp13_S_contig13320:1154..13201681462711.8663588-CDS-Ecto-sp13_S_contig13320:1154..1320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 1155..1320 +
1681462711.8749132-CDS-Ecto-sp13_S_contig13320:1916..20121681462711.8749132-CDS-Ecto-sp13_S_contig13320:1916..2012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 1917..2012 +
1681462711.883198-CDS-Ecto-sp13_S_contig13320:2741..32321681462711.883198-CDS-Ecto-sp13_S_contig13320:2741..3232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 2742..3232 +
1681462711.8914068-CDS-Ecto-sp13_S_contig13320:3614..39931681462711.8914068-CDS-Ecto-sp13_S_contig13320:3614..3993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 3615..3993 +
1681462711.8995855-CDS-Ecto-sp13_S_contig13320:4668..47521681462711.8995855-CDS-Ecto-sp13_S_contig13320:4668..4752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13320 4669..4752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13320.2660.1

>prot_Ecto-sp13_S_contig13320.2660.1 ID=prot_Ecto-sp13_S_contig13320.2660.1|Name=mRNA_Ecto-sp13_S_contig13320.2660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=471bp
KVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTP
IMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKTNRSN
DICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAH
IFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPTPAPAPPAET
APRGSQSRTSRSSTAQANGAATPNGGRSSRSSSSRTATAGTQADSLGDTS
SDSESSDAGGGDKAAGGESGAGAGGRAGAQEYDSDEEEEESDLCGICREP
AERLVSSSCGHSFCRTCVQELIDAAPGDVECPTCSQPLTVDLSGGSPGAE
GDNDDQEATQRSSGGGRGRGRGRGGAAARSRSRSGGGGGVTKSRVAGAMA
ALEASVKKKTKTMKPAASGGGGVKRSVTKHSVINRIDLNKFQSSTKMEAL
MEEVHLMMERDPAAKAIVFSQ
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mRNA from alignment at Ecto-sp13_S_contig13320:281..4752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13320.2660.1 ID=mRNA_Ecto-sp13_S_contig13320.2660.1|Name=mRNA_Ecto-sp13_S_contig13320.2660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13320:281..4752+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGGGGAGCTGTACTCGCTCGTGCGCTTCCTTCGGCTCGACCCTCA
CGCCTTCTACCAATGCCGTAGCAAGGGTTGCGACTGCAAGAGCCTCAACT
ATCGGTTCGGTCCGGAATGGCGAGCCTGCGAAGAGTGCGGGCACACCCCC
ATCATGCACTACGCTAACTTCAACCGGCACATCCTCAACCCCATCTCGTG
AGTGAAAGTCGCGTACGCATGTCCTGTGAAGACGGGAGAGTTAGAGAGAG
AGAGAGAGAGAGAGAGAGAGACGCCTTTCTGGTGTATGTCGGTTCTCGAT
CCAATGTTTCGAAGCCGATTTAGGGTTTTGGTGGCCAGTTCTTGACTTGA
CACCCGGGAGAAAAGTCTTTTGGCTTATCATCACAACATGGTTCTGTCAT
TGTCTTCTTTTAGTCTGCTTTGCTCGTCGATGGAACTCCGCCGGTTGCTG
GTAGCATGTTGATGTTGTACCACACAGGGGTCGACTCAAGCTGCTGCTCG
TGAGGCCCGAGTTTCCGAATGAAGCCAGTCAAAAAACAATCGTCTTTGTC
CGGTGTCTCGCAAAGTCTGTCCGGAGCTAGCCTAGCACGAACGTGCGACG
ATAGGCCCTGGATAAGGGGTGATGCATTCGCGTGTTTTTTTTACTGTTTT
GTAAAACGCAAGTACTTCCCTAGACTCCACTTGCTCATGGCATATGCGAG
CGAGCTTCACGTTGATACCTGCATTTGTAGTTTAACTGCTGTGGAGGTGA
CCTTGAAAACAGGGTCCCCTCTACCCAACTTCTGTATGTCGAGGACGATA
ACCTCTTGCACGGCAGTACGACACGAAAAATGATAATTTTTTCTTGATGT
CGCTGCCCTCCTTTGCTGGTGCAGCCGCACGGGCTACGTCGGTGAGGGCA
AGAAGGCGTTCCTGCGGCTGAAGCGCGAGGTGCTTGACATGATCTTGCTG
CGCCGCACCAAGACCAACAGGTCGAACGACATCTGCCTACCTCCGCGCAT
CGTCAGGGTTAGGCAGCACCGCCTCGACGAGCGGGAAGAGGTAGGTTCAT
GACGGTTGCACGTGCCTCTCGACCGTTGTTGTGGACGACTCAGGCTCCTT
CGGTAGACGATGTGGCAGATGTGTACCGTACCGGTTACGTTTTCTTACCA
TCGCCGTTGCCATATCCGTCGGTGTGGCCTGTACCGCTGTGTTTCTCCAC
CCCATGTAGTGTCAAGGCCGTTTTTCTCTGGCTCTACCCTGTGCAGTGAG
TCTGGATCCCCCGGCTCCACGATTGACAGTGTACCTTGTGTTGTCTAGAC
AGTGTACAACAACTCTTCTTCTAGTTGGGCTTTTCCAAATCCTGCAAACG
CCCCCTGTGAATCAATCCCCAGCTGCACCTCTCCTCGATGGTTAGGACGA
GGAGTGGTAATAACGCTGTCGGTCGTCTTTGACAGCGTGGCGCCCGCTTT
CAACTGCCTGGCTGCTTAGCCAGCTAGTTTAGTCCGCGTGAGAGCGTCGT
GCATATTCGACACCTCCCCCCCCCAACCACACCTGTCTGCATGGTTCAAA
ATGTCTTCGAATTGTGTGCTCATGTTGGCAGCATCCCATGCAGTAGCCCT
CAAACCGTCACGCTCGGTTGCTTTTCTGCGTGGCAGGACTTCTACCAAGC
CCTCTACACGCAGTCGCAGGCCCAGTTCGACACCTACGTGGGCTCGGGGA
CAATCCTCAACAACTACGCGCACATCTTCGACGTGAGGTGTTAAAGCTCT
TCCACGGCTTTGACTGACTTGACCTCTGTTGCGATCGAAACAGTATCGGG
CCGGCGCATGTTTGTATTGTGCGATCGCTTTCGGAGTCGTTGATTGGGAG
CGATGACGGGGTGCTTGGAGGGGCACCGTAGATCGCAATCCTTGCGCCTT
TCACGTCGGGGTTGACCGTTTTCTTGGTTGTGTGCGCTGTAACGTGGTAG
CGTGTGCTCGTGGATGGATGACGGCAAGACGCACCGAACCATTCCTCTTG
CCGTTACCGTTTTTCGGCGGGGCCCACATGTCGCACCGCGACCACCCCTA
TTTTGTTTGGTTTTGGTAAAACCGCCTCCCACAGTATGGGAGAGGCCAGT
ACGTGTTTACTTACCCCCCTCTGTGATAAAAGGGTGCATGCGTATCACAT
CACTGCTGTTGAATCACTTTTATCTCCTCATGTGGCATAGCCACGGTCAG
TGTCAAACGAAGGCGTGGAAATGGATACCGTTTTGCCACACGCAGACAAC
GATTTCACGTCATTTATTAGCCCGAATTTTAATGAAGTCCTCCGCATAAG
GGTCTGCATGTGACTTGCAGGCTGATGTACGTCGAGATTGCTTGAACCTT
GTTCTGAAAACAAAGGGAGGAACAGCGATTCCAAGAGGATCGGAGGCTTG
GTTTTCGGTTTGAAGTTGCAATTCACACCGTGCCCCCCCCCCGTACGTAC
CGCCTCCCCAGATCCTCATTCGCTTGCGGCAGGCCGTCGATCACCCCTAC
CTCGTCATTTACAGCGCCACGAAGCGAGAGGGCATGACGCCGGCGATGAA
CTCCGCGGCCGGTCAAAACCCGACCCCGGCCCCCGCTCCCCCGGCAGAAA
CGGCCCCGCGAGGGTCTCAATCTCGCACCTCTCGCTCGTCGACCGCGCAA
GCCAACGGGGCCGCTACGCCCAACGGCGGCCGGTCGAGCCGCTCTTCGTC
TTCAAGGACGGCAACCGCCGGCACGCAGGCTGATAGCCTCGGCGACACTT
CGTCGGACTCGGAGTCATCAGACGCTGGGGGCGGCGACAAGGCTGCTGGC
GGGGAGAGCGGTGCGGGCGCTGGAGGCCGGGCGGGGGCGCAAGAGTACGA
CAGCGACGAGGAGGAGGAGGAGTCGGACCTGTGCGGGATCTGCCGCGAGC
CGGCGGAGCGGCTCGTGTCGTCGTCGTGCGGGCACTCGTTCTGCCGCACG
TGGTGAGTTTGTCGGCTTGTTGTGCTATGCCCTGTAGTGCTGTTGTGGGA
TGCACGAAATGGTTTTTGTTTTGACGACGGTGAGATTTAGTTTGTCTCGT
TCGCTCGGTCGAATTTTTAGCTTTGTGTTTCTGCTGTTCGAATGAAATTG
TGCCTGAAGGCGCTCGATTTTCCCTTGCGTCAGTTGCTATAAATTTGTTT
GTTTTGTGTTCCCACCCGCCGCGGTCTTGGAAGGAACATGTTCGGTTGCA
GCTACAGCAGTGTTCAAAGTTCAACGAACCATTTTTAGAACGGTTCCCAA
ATCATCAGGCGTTTTGTATATCCAATCACCGAACTCATCCTTGATTCTGT
TTTGATGCCAACCCCTTCCATCTTGAACCCATAGCGTTCAAGAGCTGATC
GACGCGGCACCGGGCGACGTCGAATGCCCTACCTGCTCCCAGCCCCTTAC
CGTGGACCTCTCGGGAGGGAGCCCAGGGGCTGAGGGAGACAACGACGACC
AAGAGGCCACCCAACGCAGCAGTGGCGGTGGCCGCGGGCGAGGTCGTGGC
CGGGGAGGAGCCGCTGCACGAAGCAGGAGCAGGAGCGGCGGCGGCGGCGG
GGTGACTAAGTCTAGGGTGGCGGGGGCGATGGCGGCCCTGGAAGCGAGCG
TGAAGAAGAAGACCAAGACGATGAAACCCGCCGCGTCCGGAGGGGGCGGG
GTCAAGCGCAGCGTGACGAAGCACAGCGTGATCAACCGTATCGACCTCAA
CAAGTTCCAGTCGGTGAGCGAGGGCGATACCGAGCAAGAAGGCAAACATC
CCCCAGGCAGTCGGTTCATGCCTCCTTTTGTGGGACAGCTTTGGTCTAAG
CAGTCGATGCACATGCGTTCTTTTGTGGGACAGCTTTGGTCAGGGAAAAC
AACATCAGGATTGTACTATTTAGCGTGGGGCGTTGAGGGGTTGAGACAGA
GCACCGGTAAGAGAGAGGGCGGTGCACATTGGCGGTGCGCTTTGGTGGGG
AAAATTATCGCTAGGAAGTCGGTCTAGGCTATTTTCAGGCTTCTTTTCTT
TCGTGACGCCTTTCGTGTCGGGTGCACCTTACAATACCTGCGCGGGTCCG
TCGGAGTGGTGGAGGTTCATACTTTGGTTTCCAGGGGTTTTGTGGTTTCC
CGGCTCCCGTCTGGTGCCTCCTCGGGCTGTGTCTGTGGCGTGCGGGTCTT
GTTGTCCCGGCCTGGAGGCCTGCTACGGGCTTCACTTCACCTACACAGTG
GTCTTTTTGCCGGAACTATCGTGGTAACGTGTTTCTTCGGGCTTGTTCGT
CGGATGTACCGTGTCGTGTTTTGTACTCCCTGTGTCGCTGTCGACAACAA
GATTTCTTACAGCGCCCCCCCCCCCCCTTTTTGTTTTGAATGTATATGCC
TCGCCTACGTGTTTGTCTCCCCGTCTCTGCGGCCGCAGTCCACCAAGATG
GAGGCCCTGATGGAGGAGGTCCACCTCATGATGGAGCGGGACCCCGCCGC
CAAGGCCATCGTCTTCTCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13320:281..4752+

>mRNA_Ecto-sp13_S_contig13320.2660.1 ID=mRNA_Ecto-sp13_S_contig13320.2660.1|Name=mRNA_Ecto-sp13_S_contig13320.2660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13320:281..4752+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGGGGAGCTGTACTCGCTCGTGCGCTTCCTTCGGCTCGACCCTCA
CGCCTTCTACCAATGCCGTAGCAAGGGTTGCGACTGCAAGAGCCTCAACT
ATCGGTTCGGTCCGGAATGGCGAGCCTGCGAAGAGTGCGGGCACACCCCC
ATCATGCACTACGCTAACTTCAACCGGCACATCCTCAACCCCATCTCCCG
CACGGGCTACGTCGGTGAGGGCAAGAAGGCGTTCCTGCGGCTGAAGCGCG
AGGTGCTTGACATGATCTTGCTGCGCCGCACCAAGACCAACAGGTCGAAC
GACATCTGCCTACCTCCGCGCATCGTCAGGGTTAGGCAGCACCGCCTCGA
CGAGCGGGAAGAGGACTTCTACCAAGCCCTCTACACGCAGTCGCAGGCCC
AGTTCGACACCTACGTGGGCTCGGGGACAATCCTCAACAACTACGCGCAC
ATCTTCGACATCCTCATTCGCTTGCGGCAGGCCGTCGATCACCCCTACCT
CGTCATTTACAGCGCCACGAAGCGAGAGGGCATGACGCCGGCGATGAACT
CCGCGGCCGGTCAAAACCCGACCCCGGCCCCCGCTCCCCCGGCAGAAACG
GCCCCGCGAGGGTCTCAATCTCGCACCTCTCGCTCGTCGACCGCGCAAGC
CAACGGGGCCGCTACGCCCAACGGCGGCCGGTCGAGCCGCTCTTCGTCTT
CAAGGACGGCAACCGCCGGCACGCAGGCTGATAGCCTCGGCGACACTTCG
TCGGACTCGGAGTCATCAGACGCTGGGGGCGGCGACAAGGCTGCTGGCGG
GGAGAGCGGTGCGGGCGCTGGAGGCCGGGCGGGGGCGCAAGAGTACGACA
GCGACGAGGAGGAGGAGGAGTCGGACCTGTGCGGGATCTGCCGCGAGCCG
GCGGAGCGGCTCGTGTCGTCGTCGTGCGGGCACTCGTTCTGCCGCACGTG
CGTTCAAGAGCTGATCGACGCGGCACCGGGCGACGTCGAATGCCCTACCT
GCTCCCAGCCCCTTACCGTGGACCTCTCGGGAGGGAGCCCAGGGGCTGAG
GGAGACAACGACGACCAAGAGGCCACCCAACGCAGCAGTGGCGGTGGCCG
CGGGCGAGGTCGTGGCCGGGGAGGAGCCGCTGCACGAAGCAGGAGCAGGA
GCGGCGGCGGCGGCGGGGTGACTAAGTCTAGGGTGGCGGGGGCGATGGCG
GCCCTGGAAGCGAGCGTGAAGAAGAAGACCAAGACGATGAAACCCGCCGC
GTCCGGAGGGGGCGGGGTCAAGCGCAGCGTGACGAAGCACAGCGTGATCA
ACCGTATCGACCTCAACAAGTTCCAGTCGTCCACCAAGATGGAGGCCCTG
ATGGAGGAGGTCCACCTCATGATGGAGCGGGACCCCGCCGCCAAGGCCAT
CGTCTTCTCCCAG
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