mRNA_Ecto-sp13_S_contig1332.2659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1332.2659.1
Unique NamemRNA_Ecto-sp13_S_contig1332.2659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: D7FLY8_ECTSI (Endothelial protein B9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY8_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 1.260e-175
Identity = 258/267 (96.63%), Postives = 259/267 (97.00%), Query Frame = 1 
Query:    1 TRTITRDKPAFGKTTDPFNKTATCVSPAAXXXXXXXXXXXXXXGASNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYNRSEGMQGVSQDQRFESYSGGGSSSHRVSSSIFGNTTGSKTSFVG 801
            TRTITRDKPAFGKTTDPFNKTA  VSPAA   XXXXXXXXXXXGASNFFIMCTGQVEFG+FGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGM DFGYNR EGMQGVSQDQRFESYSGGG SSHRVSSSIFGNTTGSKTSFVG
Sbjct:    8 TRTITRDKPAFGKTTDPFNKTAAGVSPAATASXXXXXXXXXXXGASNFFIMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMVDFGYNRPEGMQGVSQDQRFESYSGGGGSSHRVSSSIFGNTTGSKTSFVG 274
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A6H5KBF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF1_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 3.580e-116
Identity = 172/218 (78.90%), Postives = 180/218 (82.57%), Query Frame = 1 
Query:  148 IMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYNRSEGMQGVSQDQRFESYSGGGSSSHRVSSSIFGNTTGSKTSFVG 801
            ++C  ++   QFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPID+TFKSTNAFGWPR+ALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPE                             V+  GMADFGYNR EGMQGVSQDQRFESYSGGG S+HRVSSSIFGNTTGSKTSFVG
Sbjct:    1 MLCACRLLAPQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDITFKSTNAFGWPRLALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPE-----------------------------VIMLGMADFGYNRPEGMQGVSQDQRFESYSGGGGSTHRVSSSIFGNTTGSKTSFVG 189
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A7S1U2U9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U9_9STRA)

HSP 1 Score: 249 bits (637), Expect = 7.860e-80
Identity = 120/223 (53.81%), Postives = 157/223 (70.40%), Query Frame = 1 
Query:  136 SNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYNRSEGMQGVSQDQRFESYSGGGSSSH---RVSSSIFGNTTGSKTSF 795
            S F +M TGQ+  G F   DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D ++VWNFPID TFKSTN FGWPRIA+SV+ VD +GRD + GYGSV+IPT  G++ERV HMYAP  SS+ Q+  AW+ G  PEFFDS F  +G GR+VTRVR  GTV+V+L+V+ RG+A FGY+           +R  S +G  +S+    R   +++G+T  S+TS+
Sbjct:   20 SEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYDYXXXXXXXXXSERLASLAGAFASTDKDARAEKTVYGSTLRSETSY 242
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A7S1U318_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U318_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.210e-77
Identity = 110/178 (61.80%), Postives = 137/178 (76.97%), Query Frame = 1 
Query:  136 SNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYN 669
            S F +M TGQ+  G F   DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D ++VWNFPID TFKSTN FGWPRIA+SV+ VD +GRD + GYGSV+IPT  G++ERV HMYAP  SS+ Q+  AW+ G  PEFFDS F  +G GR+VTRVR  GTV+V+L+V+ RG+A FGY+
Sbjct:   20 SEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYD 197
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: F0YE40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE40_AURAN)

HSP 1 Score: 225 bits (574), Expect = 6.720e-71
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 1 
Query:  136 SNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGY 666
            S FF++  GQVE G+F   D+LY RY  SFG DW +V G++TGLSQIA++A G D SVVWNFP+D++FKSTNA GWPR+++SV+ VD +GRD V GYGSVLIP   G ++R  H Y P PSS+ QRF +W +G Y EF+DSKFV +GE REVTRV  +G VKV  DV+TRGM   GY
Sbjct:   15 SAFFVVVNGQVESGEFPD-DDLYVRYGFSFGPDWTVVDGIETGLSQIARKAPGVDQSVVWNFPVDISFKSTNAHGWPRMSISVYGVDGLGRDVVRGYGSVLIPPFPGGYDRYIHTYVPVPSSLWQRFVSWFTGTYAEFYDSKFVAQGENREVTRVESTGVVKVKFDVLTRGMETLGY 190
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A836CI87_9STRA (B9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI87_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.290e-68
Identity = 103/161 (63.98%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:  163 QVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTR 645
            QVE+G+F   DNLY RY LSFG+DW ++HGL+TGLSQ+A+R+G    +V WNFPIDV  KST AFGWPR+ALSV+ VD +GRD VVGY SVL+P   G H +  + YAP+ SS+LQR R W++GAYPEFFD K V R EGREVTRV+R G V+VSL VMTR
Sbjct:    9 QVEYGEFSGYDNLYVRYALSFGHDWTVLHGLETGLSQMARRSGSGGEAV-WNFPIDVALKSTCAFGWPRLALSVYAVDALGRDAVVGYASVLVPPTPGPHAQWVYTYAPKASSILQRVRGWIAGAYPEFFDPKLVARSEGREVTRVQRRGRVRVSLTVMTR 168
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A7S2BJK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJK9_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.510e-68
Identity = 106/186 (56.99%), Postives = 137/186 (73.66%), Query Frame = 1 
Query:  133 ASNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLD---TGLSQIAQR--AGGQDT---SVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGY 666
            +S+F++M TGQVE G FG  DNLYC+Y+ S+G+DW +V GLD    GLSQIA++  AG  +T   SVVWNFPIDV FKSTNAFGWPRI+ +V+ +D +GRD   GYGS+L+PTQ G +++   MYAP PSS  QR    ++G YPEFFD+KFV++G  REVTRV  +G+VKV + V T+ M  FGY
Sbjct:   27 SSSFYLMITGQVESGDFGGADNLYCKYSFSYGHDWTVVTGLDGVTAGLSQIAKKGSAGMDNTFGGSVVWNFPIDVAFKSTNAFGWPRISFTVYGIDALGRDKTYGYGSMLVPTQPGHYQKEIEMYAPMPSSWYQRILNGITGTYPEFFDTKFVSQGSNREVTRVESTGSVKVQVQVATKDMQKFGY 212
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A7S1CLA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLA7_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.030e-67
Identity = 96/179 (53.63%), Postives = 132/179 (73.74%), Query Frame = 1 
Query:  130 GASNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGY 666
            G S FF+M TGQ+  G+F   + LYC++ ++ G DW +V G   GLSQ+A++A G D  VVWN+PIDV+FK+TNAFGWPR+ LSVF VD +GRD + GYG++ +PT  GR+ R    + P  SS+ Q F AW++G  PEFF+ KFV++GEGREVTRVR +G V+V ++V+TRGM++ GY
Sbjct:   14 GPSGFFVMATGQIRRGEFSDGEKLYCKFDVACGPDWKVVQGHAQGLSQVAKKAAGGDDGVVWNYPIDVSFKATNAFGWPRLVLSVFEVDALGRDVIRGYGALHVPTVPGRYTRFVRTFTPASSSLFQEFTAWLTGNRPEFFNPKFVSQGEGREVTRVRSTGVVQVDINVLTRGMSEHGY 192
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A8J2WZC0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC0_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.780e-67
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 1 
Query:  136 SNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYNRSEG 681
            S FF++  GQ+E G+F   D+LY RY  SFG DW +V G++ GLSQIA++A G D SVVWNFP+D++FKSTNA GWPR+++S++ VD +GRD V GYGSVL+P  AG +ER  H Y P PSS+ QR  +W++G Y EF+DSK V + + REVTRV  +G VKV   V+TRGMA  GY+ + G
Sbjct:   55 SAFFVVVNGQLESGEF-PYDDLYVRYGFSFGPDWTVVDGIENGLSQIARKAAGCDNSVVWNFPVDISFKSTNAHGWPRMSVSIYGVDSLGRDVVRGYGSVLLPPFAGDYERYIHTYIPVPSSLWQRLVSWLTGTYAEFYDSKLVAQSDNREVTRVESTGVVKVKFSVLTRGMAALGYSLAPG 235
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BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Match: A0A7S0QX76_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX76_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 5.640e-63
Identity = 94/183 (51.37%), Postives = 127/183 (69.40%), Query Frame = 1 
Query:  133 ASNFFIMCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMADFGYNRSEG 681
            A +F +M TGQ+E  +  S DN YC+Y L +G+DW I+ G++ G++Q+ ++AG  D  +VWNFP+DVTFKSTNAFGWP++ LSVF VD  GRD + GYG V +P  AGRH R   +Y P  +S+LQ+F +W++G   EF D+KF   G GREVTRVR +G   V+L+VM + MA FGY    G
Sbjct:    5 ARHFTLMFTGQLEHAEISSCDNAYCKYLLVYGDDWRILDGVEDGITQVTRKAG-PDGHLVWNFPLDVTFKSTNAFGWPQLVLSVFEVDRFGRDVIKGYGCVHLPIAAGRHVRKVQLYRPLSASLLQQFTSWIAGNPAEFTDAKFPAMGHGREVTRVRSTGVATVNLNVMIKDMATFGYTEEAG 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1332.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY8_ECTSI1.260e-17596.63Endothelial protein B9 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KBF1_9PHAE3.580e-11678.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U2U9_9STRA7.860e-8053.81Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U318_9STRA1.210e-7761.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0YE40_AURAN6.720e-7159.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CI87_9STRA1.290e-6863.98B9 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2BJK9_9STRA1.510e-6856.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1CLA7_9STRA1.030e-6753.63Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2WZC0_9STRA1.780e-6755.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0QX76_9CHLO5.640e-6351.37Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1332contigEcto-sp13_S_contig1332:9130..14787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score496.1
Seed ortholog evalue1e-137
Seed eggNOG ortholog2880.D7FLY8
Preferred nameB9D1
Model size804
KEGG koko:K16744
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001701,GO:0001944,GO:0002065,GO:0003674,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007423,GO:0007568,GO:0007610,GO:0008104,GO:0008150,GO:0008158,GO:0008340,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010259,GO:0015630,GO:0016020,GO:0016043,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030326,GO:0030537,GO:0030855,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035177,GO:0035869,GO:0036038,GO:0036064,GO:0038023,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060089,GO:0060173,GO:0060271,GO:0060429,GO:0060563,GO:0060756,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072358,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515
Exons7
EggNOG free text desc.hedgehog receptor activity
EggNOG OGsKOG4027@1,KOG4027@2759
Ec32 ortholog descriptionB9 domain
Ec32 orthologEc-22_000220.1
Cds size804
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1332.2659.1prot_Ecto-sp13_S_contig1332.2659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1332 9130..14787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.7797208-CDS-Ecto-sp13_S_contig1332:9129..92311681462711.7797208-CDS-Ecto-sp13_S_contig1332:9129..9231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 9130..9231 +
1681462711.7903492-CDS-Ecto-sp13_S_contig1332:9721..97991681462711.7903492-CDS-Ecto-sp13_S_contig1332:9721..9799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 9722..9799 +
1681462711.798633-CDS-Ecto-sp13_S_contig1332:12206..122751681462711.798633-CDS-Ecto-sp13_S_contig1332:12206..12275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 12207..12275 +
1681462711.806761-CDS-Ecto-sp13_S_contig1332:12856..129881681462711.806761-CDS-Ecto-sp13_S_contig1332:12856..12988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 12857..12988 +
1681462711.8148355-CDS-Ecto-sp13_S_contig1332:13728..138931681462711.8148355-CDS-Ecto-sp13_S_contig1332:13728..13893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 13729..13893 +
1681462711.82287-CDS-Ecto-sp13_S_contig1332:14318..144181681462711.82287-CDS-Ecto-sp13_S_contig1332:14318..14418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 14319..14418 +
1681462711.8309515-CDS-Ecto-sp13_S_contig1332:14629..147871681462711.8309515-CDS-Ecto-sp13_S_contig1332:14629..14787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1332 14630..14787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1332.2659.1

>prot_Ecto-sp13_S_contig1332.2659.1 ID=prot_Ecto-sp13_S_contig1332.2659.1|Name=mRNA_Ecto-sp13_S_contig1332.2659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
TRTITRDKPAFGKTTDPFNKTATCVSPAAAASTAGGGGAVVASGASNFFI
MCTGQVEFGQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQD
TSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQ
AGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRV
RRSGTVKVSLDVMTRGMADFGYNRSEGMQGVSQDQRFESYSGGGSSSHRV
SSSIFGNTTGSKTSFVG*
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mRNA from alignment at Ecto-sp13_S_contig1332:9130..14787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1332.2659.1 ID=mRNA_Ecto-sp13_S_contig1332.2659.1|Name=mRNA_Ecto-sp13_S_contig1332.2659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5658bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1332:9130..14787+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGACAATCACCCGCGACAAGCCGGCGTTCGGGAAAACCACCGATCC
ATTCAACAAGACAGCTACGTGTGTTTCACCGGCAGCCGCGGCATCGACGG
CGGTGAGAGAGAATAGGCTCGCAAGTTTACAGACAGACGTCAGCTGTGCC
GGTTTCGTACATTAGTATCTTGGTGGTGGTCGAGCTTGGGCTCGGCAAGT
GAACACCAGAGAGTGTCTTACGAAGGGTGGACTGAATTGGGCACCTTGGC
GGTACGCATTGTTTCGTGCGAATGTTATCTTTCTTCGTGGAAAGGCGCCT
CCTAGACACAGAGTACACAGGAGTCTACATGAGTGAGGAGTCCCCGGCGA
GACCTTGCTTGATCCATAACTATTGGATGCCCCGCCATACCGTTGATACC
TCTTCCCGCGGCACTAATAAGGACTGCGCCCACTAGGTCGAAGAAGAGGT
CGGCCGATTCGCATCTCTGCAGCACTCCGAACACGACCCTTCTGCCTTGC
GCGATAAGATAGTCTTGCGCCGCAAGGTTTTGCACGACGCGACAGATGTT
GTTCAGACTACTCTCCTCCGTCATCATGTGACTCTATGGCAGGGCGGGGG
GGGAGCGGTTGTAGCTTCAGGGGCGTCTAACTTTTTCATCATGTGCACGG
GCCAGGTGGAGTTCGGCCAGGTATGTATTAAGTTTTCTGTTGGATGCGAT
TTCAAGATTGTCAATAGTGTCATCCCACGATAAGCAGGCGGCAGAACAAT
CTGCCGCTCGATGTTTCTCTCGAGCGCAGCATGCCATATTGATGTAGCTG
TTCTTCGCGCCGCTGGACGCACGCAAAGCTGTATAAACATTCTTCAAATC
AGCTTGCCTCGGGCAACCGTGCTGGTCCTCTAAGAGATGCTTGGTATATT
TTTGAAGGTGGTGTAGTGAGCATTGACGAGATGCAGATTCGCGCACAACC
TATCAATCCCTGAGTGCACAAACAAGTCTTCGAAGTATGCGTGCACTATT
TCTCGTTGCATCCTTACGAAGTCGATTTTGTCAAGAAGAAAGCGTTAAGC
ATAGCCTAGACGGACGATGGCAAATACTCAATCTCACGTGTAGAGGGTGC
AGACGAGCAGAAGATTCACTGTGTTTTTGCTTTCAGAAACACAGAAGTAT
GGCGCAGCGGCAGATTCATGCTGGGTTGTGACATGCATGGTACAACGTAG
TAGTAGTATGCATATGAGGGAGCACAATGTCGCCGACAGGGACGACCCAT
GGGTGGAGTACGCGGTGGACATCTACAAGCGTTACAAGGACCTAGAGGTA
TGTCGTGCAAGGTTCGTCCGTTCCAAGTACAGCGACGAGCCGTGCGAAGC
AGTTGTTCCATAGATAACATGTGCCGTCGGGAGAGTGTGAAAACATTGAT
CTTGGATCTCGCTTGTGCTACCGCTATACTGTTTGAGGCACAGGCTATCT
ATGGAACAAGCTCAAACAGTGGAATGTGCCTCAAACAGTATAGCGGTAGC
ACAAGCGAGATCCAAGATCAATGTTTTCACACTCTCCTGACGGCACATGT
TATCTATGGAACAACTGCTGCGCACGGCTCGTCGCTGTACTTGGAACGGA
CGAATCTTGCACTACTTTGGACACACCTAGGTCCTTGTAGCGCTTGTACA
TATCCACCGCCTAATCCGCCCACGCGTCGTCCCTGTCGGCGACATCATGC
TCCGACACCTCCGACGGCGAAACGCTACACCTCTTCAGCCGCGATACGAC
CGTTCATTTTAATTCCATGCGAAGAAGAAGGTGTCCGCTCGTGTGCTGGT
CTACCGAGAGATGAGTGTATTTGATGAACCTGATGATACACAGAGAACAT
GCTTTGTCAAAGAAGCCGACAAACATATACATGCGCGCGCGCGTGATAGC
AAGAACGAATGAGTGTAACCGCCGAAACGCGGCGGAGAAAGCAGCCTCCA
CGGGGCGAGCGGCAGATGTGTGCGCGGACCCTGTCGTTGGCATGCTAATC
CCGGCCTCGAAGTGGGTAATCTCATTATAGACTGTAATTTGACGGCGGGT
AGGCAACTATGCGCAGGCGCGAAGTAGTCGAGATCGGAGTTATTGTACAA
TCGATGCATGGATTGATGGATGTGTTCCGACGACGAAATGAGAGAGTCAG
TCATAGAGTCATCAATCATCAATCATCAAGTTGTCAAGTTCGCGACGCAA
TATACTTCCGCGTCGGGAGGGTGCAGCGGTGTGGCCCGAACCTCTCGTTA
GTAGGCAAAATTCGTAGCACATAGCCAGCGTCGAGGGTGTTGCTCATCCA
GTTGTAGATTGGACGGGGCTTCAGGTTCATGACAACCAGTCGTATTTGCC
GCACAAATTGATCGAGTTCGGAGTAAATTCAGTGCCGGGAGCATTTGCTG
CATGCTAGTGTTCTGTGCTTGAGAAGACCGGTCACCGACACAGCCAAATG
TTAACGCAGGAGGCACCAATCAGGCTGAACATTGCTGAGGGTATCTAAAG
TAGTGCAGGACGGCCGATGGTTTGATTCCTCGCGCCCCGGGCGTTCGGCT
CAGAAAAGTGCGTGGTTCGGAGCTTCGGAGTGAACGGCATCAGAATTCGC
ATTATTTCCAACCGTTCTGTGAGACCTCTAGAGATCGTGACGATCTCTTA
GAGGGATACCACGTTCGGTTTGGGTCGGGTTGTGAACCCCGCGACCTCGT
GTTGAATAATCTTTGACGTAACTACTTCGATCCGTTTCTTGCGGTGGTCG
GTATGGCCACGATCGGTGGTATTCATTCAGCACCATGTTGACACCTCGCG
GCGCACCAACCATTAGGATAGCCTGCGGAAAAGGCGTTGAACCGGGACCT
ACAACACACGACCACCAAACAAGTGCCGAGATGGATACGTTTTAGCACGT
CTGTTCTCAGCCTACACCTTCAAGAGTCGTGTGAATGCAGGCGTCCAATC
GTGATCTGATTCTCCCCGTCGAGGCGAAACCGCACTAGCCGTGTTGTGGA
GCTTGTGCGTTTCGTTACCTCGACCTCACAGCGCCACACACCAAGTGCTG
TGTGCTTGTTGACTCCTTGCTCCGCAGTTCGGGAGCCTGGACAACCTCTA
CTGCAGGTATACACTTAGCTTCGGGAACGACTGGTACATTGTACACGTGA
GTACGTGTGTGACAGCAGTCCACTCGGGTAAACTCAGACATTTTAATGTT
CCCGATGACGTGGGAGGACGACAACTTGATGCTGTTACCGTGCTAACTGT
AGCAACGTCCTGATCGTCGATGAGTTGTAGGTAACTGCTGAACGTTTCTC
GGCGGTCGGTGAATTTGTGACGGAGCATTCGTAGCATTTTTTTCGGAGAG
TCAAGTGGGCCAACACGAAAGGCGCGCGGCAAGGAGTAGGCACGCTACAG
AAATCACCGTACCCGACGGTTAAATTTTGAATGCACATCTGCATCAGACT
GCGACGACGCGTGTAAACATCCTAACTGACATGGTGCGTTTGGAGAGTGT
ATGTACCAGCCGAAAGTTGAACCTGTGCAGAACGCCGCAGGGCCAATGCT
TGTTGAACACTGGCGTTGAACTGTCAACCAGCATCTTCATATCAACACAT
CGAACCGGTTTGCTGGTTCAGGGTACTTCACGGGGCCATTTGGCTGGGCC
CACAGGCAAACCATAGCCGTTGTCCCGGTCAAGATCACCAGGCTCACCCC
CGTCTCAACGGCACTCTATTTCCGCAGGGTCTCGACACGGGACTGTCTCA
GATCGCTCAGCGGGCTGGAGGGCAGGACACGTCCGTCGTCTGGAATTTTC
CCATCGACGTCACCTTCAAGAGCACGAACGCCTTCGGGTGGCCTCGAATT
GCCCTCAGCGTGAGTCTCGTGTTGGCCAACTCCTCTTCAGATTCATGGCG
AACAGAAAGCTCGCGATCACCGGTTGACCGCTGCTGCTACCGACTCCATG
ACGGTTTGTGCGGTGTGTCTTGAATCTGTGGTGGTGTGCAAACGAGAGCC
GCACCCACCAATATCAACACAGTCACTGAGATTCCCCCAGGTTGATTCCG
TACGGAGAGCAGCTTGATTCCCTGAGAAGAGACTGGACATTAAGTGCAGG
TATCTAGATTGCGTTCGTTGCGAAGCAAGTTTGTCCTTACTAGTCAATAA
TTCTTGTTGGACTCTCCCCATAAAATAACGTGGAATACGCACCCGTGATT
TATGCGCACAGCGACATCGCACAATAATATGTCGAATGTAATCTCACCGG
TCTCTGAAGCCTGCCGCTCGTACAGGCCTTCAAATAGACATTACGAGACA
ACCGGTGCATTGGTGTAAAGCAAGATCCAAAGCACGTACCCCGTACCGGT
GGTGCTCCATTCATCCGTTGGTGCGCCTCCAGCAACTCTCCCAAGCCCAC
AGAAGAACACTATCTCACTTCCCGCGAGCGAGCACCTCCTCTCTTGAGCA
CTTCCAAACGCGCTGCCTTCGCGTTACCAACTGGACTGATTCTAAACAGC
GCTCAATCATGTCTGCCGCCGGCATATCTTCGACGTTACCCTCCAAGCTA
CCCTTACCGTTGCCCATTGTCGTCGCTGCCATGCTCGTGGCCACCCCAGG
TGTTCCGAGTGGACGATATGGGCCGAGACACGGTTGTCGGATACGGATCT
GTCTTGATCCCAACCCAGGCAGGAAGGCACGAGAGAGTAGCGCACATGTA
CGCCCCTCAGCCTTCGTCGATGCTGCAACGATTCAGAGCCTGGGTGTCAG
GCGCGTATCCAGAGGTGATTATGTCGGGTTTGCCTCAGAAGGACAGGCTG
CAAGCTTTGGCGTGTGTCCTGGAAAAAGCAGCCTGGACTCATTGTGCATC
GAATACATGTCGCGTGGGAGCAATTAGCAACGACCGACCTTGCTGGCGTT
TAAGGTGCTGGTTGAGCGGCGCGGTCGGTCTTCGAGTACCACAAAATCCT
GTGCTAAGTTTCTCATGTCTTCCTGCTGGAAATCAGTGGACCAGAACGGT
GGGATTTGGAAACACATTGAACACAACCGACACACCATACCTTGTGTTTG
ACCACCCACAGCCAGGTGTATACGTTAGTACGGTTTTGGTCGGTCGATGT
TTCCGCCACCCATTGTCCGATGGCGACTCTGTCTAGATGGCAAAAACGCG
CTCCGTGCCGTGGCCTCGCTTATCTCGTCTCGTCGCCAGTTCTTCGACTC
CAAGTTTGTGACTCGCGGGGAGGGGCGCGAGGTGACTAGAGTCAGGCGAT
CAGGCACGGTGAAGGTTTCCCTCGATGTCATGACCAGAGGTGAAAGAAAG
CGGCGGGTTTAGCCTTCTTTGTTGGAGTCAACACTAGAGCCCAATTGTTG
GAGTTACGAAAGTGTCATGGATACTGAACCAGTGCAAAGAGCGGTGGACT
CGGCTTCCAGGCTGGCTACCTCACCCACACTCACCACCATTGAGATCCAC
TCAATGGAGAAGAAAGTGACACGCACATCGATTGGTATTTCTCCCCACAG
GGATGGCGGATTTCGGTTACAACAGGTCAGAGGGAATGCAAGGAGTGAGC
CAGGACCAGCGGTTTGAGTCCTACTCGGGAGGGGGGAGTTCGAGCCACCG
AGTCTCGTCCTCGATTTTCGGCAACACCACTGGAAGCAAAACAAGTTTTG
TTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1332:9130..14787+

>mRNA_Ecto-sp13_S_contig1332.2659.1 ID=mRNA_Ecto-sp13_S_contig1332.2659.1|Name=mRNA_Ecto-sp13_S_contig1332.2659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1332:9130..14787+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGACAATCACCCGCGACAAGCCGGCGTTCGGGAAAACCACCGATCC
ATTCAACAAGACAGCTACGTGTGTTTCACCGGCAGCCGCGGCATCGACGG
CGGGCGGGGGGGGAGCGGTTGTAGCTTCAGGGGCGTCTAACTTTTTCATC
ATGTGCACGGGCCAGGTGGAGTTCGGCCAGTTCGGGAGCCTGGACAACCT
CTACTGCAGGTATACACTTAGCTTCGGGAACGACTGGTACATTGTACACG
GTCTCGACACGGGACTGTCTCAGATCGCTCAGCGGGCTGGAGGGCAGGAC
ACGTCCGTCGTCTGGAATTTTCCCATCGACGTCACCTTCAAGAGCACGAA
CGCCTTCGGGTGGCCTCGAATTGCCCTCAGCGTGTTCCGAGTGGACGATA
TGGGCCGAGACACGGTTGTCGGATACGGATCTGTCTTGATCCCAACCCAG
GCAGGAAGGCACGAGAGAGTAGCGCACATGTACGCCCCTCAGCCTTCGTC
GATGCTGCAACGATTCAGAGCCTGGGTGTCAGGCGCGTATCCAGAGTTCT
TCGACTCCAAGTTTGTGACTCGCGGGGAGGGGCGCGAGGTGACTAGAGTC
AGGCGATCAGGCACGGTGAAGGTTTCCCTCGATGTCATGACCAGAGGGAT
GGCGGATTTCGGTTACAACAGGTCAGAGGGAATGCAAGGAGTGAGCCAGG
ACCAGCGGTTTGAGTCCTACTCGGGAGGGGGGAGTTCGAGCCACCGAGTC
TCGTCCTCGATTTTCGGCAACACCACTGGAAGCAAAACAAGTTTTGTTGG
GTGA
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