mRNA_Ecto-sp13_S_contig13312.2654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13312.2654.1
Unique NamemRNA_Ecto-sp13_S_contig13312.2654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: D7G5B1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B1_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 7.350e-53
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWDT 261
            TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVT DAGQDSMLVVWDT
Sbjct:   12 TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTADAGQDSMLVVWDT 98
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A6G0XN73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XN73_9STRA)

HSP 1 Score: 131 bits (330), Expect = 9.870e-34
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL+++WSFGFNKD+V+GVH+L  D   A+F+ A HTGVIYDYA RTQ LLQGHCN I   AVS +K+W+VT D GQDSMLVVWD
Sbjct:    9 NALSMSWSFGFNKDIVNGVHNLSDDNVHAIFYTAGHTGVIYDYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWD 93
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A397D0A3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0A3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.410e-33
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL+L+WSFGFNKD+V GVHSL  D   A+F+ A HTGVIY+YA RTQ LLQGHCN I   AVS +K+W+VT D GQDSMLVVWD
Sbjct:   10 NALSLSWSFGFNKDIVGGVHSLSDDTVHAIFYTAGHTGVIYNYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWD 94
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: W4H2Q6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2Q6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.420e-33
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL+L+WSFGFNKD+V GVHSL  D   A+F+ A HTGVIY+YA RTQ LLQGHCN I   AVS +K+W+VT D GQDSMLVVWD
Sbjct:   10 NALSLSWSFGFNKDIVGGVHSLSDDTVHAIFYTAGHTGVIYNYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWD 94
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A485LPA6_9STRA (Aste57867_23417 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPA6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.370e-33
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL L+WSFGFNKD+V GVHSL  D   A+F+ A HTGVIY+YA RTQ LLQGHCN I   AVS +K+W+VT D GQDSMLVVWD
Sbjct:    7 NALGLSWSFGFNKDIVGGVHSLSDDHVHAIFYTAGHTGVIYNYANRTQRLLQGHCNTISCCAVSEDKRWIVTADRGQDSMLVVWD 91
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A418AVL0_9STRA (C2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AVL0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.190e-32
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            +NAL+L+WSFGFNKD+V GVHSL  D   A+F+ A HTGVIY+YA RTQ LLQGHCN I    VS +K+W+VT D GQDSMLVVWD
Sbjct:  129 SNALSLSWSFGFNKDIVGGVHSLSDDTVHAVFYTAGHTGVIYNYANRTQKLLQGHCNPISCCTVSEDKRWIVTADKGQDSMLVVWD 214
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A8K1C420_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C420_PYTOL)

HSP 1 Score: 123 bits (308), Expect = 9.250e-31
Identity = 53/86 (61.63%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            +NAL L+W+FGFNKD+V+GVH+L ++ R+A+F+ AAHTGVIYDYA R Q LLQGHC+ I    VS +K+W+VT D G +SM+VVWD
Sbjct:   28 SNALRLSWTFGFNKDLVNGVHNLTTESRRAIFYSAAHTGVIYDYANREQKLLQGHCHPITCCVVSEDKRWIVTADRGHESMIVVWD 113
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A6A4E7K8_9STRA (Cilia-and flagella-associated protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E7K8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.260e-30
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL L W+FGF KD+++GVHSL +  R+A+F+ AAHTGVIYDYA+R Q LLQGHC+ I    VS +K+WVVT D GQ+SMLVVWD
Sbjct:   57 NALRLAWTFGFQKDLINGVHSLSTGSRRAVFYAAAHTGVIYDYARRQQRLLQGHCHPISCCVVSEDKRWVVTADRGQESMLVVWD 141
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A225VX07_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VX07_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.260e-30
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL L W+FGF KD+++GVHSL S  R+A+F+VAAHTGVIYDYA R Q LLQGHC+ I    VS +K+WV T D GQ+SMLVVWD
Sbjct:   54 NALKLAWTFGFQKDLINGVHSLSSGSRRAVFYVAAHTGVIYDYAHRQQRLLQGHCHPISCCVVSEDKRWVATADRGQESMLVVWD 138
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BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Match: A0A5D6YJ05_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ05_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.720e-30
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    4 NALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWD 258
            NAL L W+FGFNKD+V+GVH+L +D R+ALF+ +AH+GVIYDYAKR Q LLQGHC+ I    VS +K+W+VT D G +SM+VVWD
Sbjct:   31 NALRLAWTFGFNKDLVNGVHNLSTDLRRALFYTSAHSGVIYDYAKRQQTLLQGHCHPISCCVVSEDKRWIVTADKGDESMIVVWD 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13312.2654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B1_ECTSI7.350e-5398.85Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6G0XN73_9STRA9.870e-3468.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397D0A3_9STRA3.410e-3369.41Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4H2Q6_9STRA3.420e-3369.41Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A485LPA6_9STRA6.370e-3369.41Aste57867_23417 protein n=1 Tax=Aphanomyces stella... [more]
A0A418AVL0_9STRA1.190e-3267.44C2 domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A8K1C420_PYTOL9.250e-3161.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4E7K8_9STRA1.260e-3064.71Cilia-and flagella-associated protein n=5 Tax=Phyt... [more]
A0A225VX07_9STRA1.260e-3065.88Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A5D6YJ05_9STRA1.720e-3063.53Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13312contigEcto-sp13_S_contig13312:2594..3471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score188.7
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog2880.D7G5B1
Preferred nameWDR66
Model size265
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.cilium movement
EggNOG OGs2CCTB@1,2QQ05@2759
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.5041425-CDS-Ecto-sp13_S_contig13312:2595..26971681462711.5041425-CDS-Ecto-sp13_S_contig13312:2595..2697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13312 2596..2697 -
1681462711.514091-CDS-Ecto-sp13_S_contig13312:3312..34711681462711.514091-CDS-Ecto-sp13_S_contig13312:3312..3471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13312 3313..3471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13312.2654.1prot_Ecto-sp13_S_contig13312.2654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13312 2596..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13312.2654.1

>prot_Ecto-sp13_S_contig13312.2654.1 ID=prot_Ecto-sp13_S_contig13312.2654.1|Name=mRNA_Ecto-sp13_S_contig13312.2654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
TNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQD
LLQGHCNCICAVAVSHNKKWVVTGDAGQDSMLVVWDT
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mRNA from alignment at Ecto-sp13_S_contig13312:2594..3471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13312.2654.1 ID=mRNA_Ecto-sp13_S_contig13312.2654.1|Name=mRNA_Ecto-sp13_S_contig13312.2654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=878bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13312:2594..3471- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAATGCGCTAACATTGAACTGGAGTTTTGGTTTCAACAAGGATGTTGT
TGACGGTGTACACAGCTTGTGCTCTGACGGGCGACAGGCCCTCTTTTTCG
TGGCGGCCCACACCGGCGTAATATACGACTACGCCAAGCGCACTCAAGAC
CTCTTGCAGGTATGCTCATGTAGCCACTAAAGTTGCTTATCATGCACGCT
GGCTTGTGCGCTGTGCATCTTGGTTCTCGTGGTCTTGAATAACGCGTTGT
TTCCTGCGGTGCTTGCTTTCTGACTTCTTTCGGGAGAAGAATAGGCTACA
ACCACACTCCCCTACTTGCAATCGTAACACTGAACACTACTTACACAGTC
CACACATACCCCCCCCCCAAAAAAAAAATATAAGAAAAACATAAAATACT
TTAGCCTACAAGTACTAGTCGAGACAATTCAAGAAAATACACGCAAAATC
ATTGTTGATCTTTCCGCATGAAACGAGAGCATTTGTAATATTGAACCTTT
CCATCGTGGTCAAGTGGAATTTGTTGCTGCTGTACCAAGCTGTACACCCC
CCCCTCCTTTTCAATTGTATTTGAAACCTCAAACCTCAATTATTCTCCAT
TGAATATGAACTACTGCTGTAGTTAATACTGACGCGTACTACAGATGTTC
GACATACCAACAATACCACCGGCCAATCTCCCCTGCCATGTTCTACGTTT
AGCGAGGGTGGTCCCCCAAGCGTTACAAATCGTTTGCCTTTCTCTGCCTT
TGCTTGTCTCCATCGCTGTCATAGGGGCATTGCAACTGTATCTGCGCCGT
CGCAGTCAGTCATAACAAGAAATGGGTGGTAACAGGCGATGCTGGACAGG
ACAGCATGCTTGTTGTATGGGACACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13312:2594..3471-

>mRNA_Ecto-sp13_S_contig13312.2654.1 ID=mRNA_Ecto-sp13_S_contig13312.2654.1|Name=mRNA_Ecto-sp13_S_contig13312.2654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13312:2594..3471- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAATGCGCTAACATTGAACTGGAGTTTTGGTTTCAACAAGGATGTTGT
TGACGGTGTACACAGCTTGTGCTCTGACGGGCGACAGGCCCTCTTTTTCG
TGGCGGCCCACACCGGCGTAATATACGACTACGCCAAGCGCACTCAAGAC
CTCTTGCAGGGGCATTGCAACTGTATCTGCGCCGTCGCAGTCAGTCATAA
CAAGAAATGGGTGGTAACAGGCGATGCTGGACAGGACAGCATGCTTGTTG
TATGGGACACG
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