mRNA_Ecto-sp13_S_contig13303.2650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13303.2650.1
Unique NamemRNA_Ecto-sp13_S_contig13303.2650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: D7G6W3_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W3_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.370e-48
Identity = 83/98 (84.69%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    4 AAAQATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKAGAIFR 297
            AAAQAT LEYGNTTS  AVVESCSALT+ARLVHLM GPYRL+SHLRVLKKFLLHGQGDLMLTLIEVLGPELDK+ATV YRHNV+GI+EG IK  AI +
Sbjct:   11 AAAQATTLEYGNTTSPTAVVESCSALTDARLVHLMLGPYRLKSHLRVLKKFLLHGQGDLMLTLIEVLGPELDKKATVIYRHNVMGIVEGAIKTSAILQ 108
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 4.950e-45
Identity = 86/99 (86.87%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 QAAAQATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKAGAIFR 297
            +AAAQAT LEYGNT SLRAVVESCSALTNARLVHLM GPYRL+SHLRVLKKFLLHGQGDLMLTLIEVLGPELDK+ATV YRHNV+GI+EGVIK  AI +
Sbjct:  513 KAAAQATTLEYGNTISLRAVVESCSALTNARLVHLMLGPYRLKSHLRVLKKFLLHGQGDLMLTLIEVLGPELDKKATVIYRHNVMGIVEGVIKTSAILQ 611
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.380e-43
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    4 AAAQATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKAGAIFR 297
            AAAQAT LEYGNTTSLRAVVESCSALT +RLVHLM GPYRL+SHLRVLKKFLLHGQGDLMLTLIEVLGPELDK+ATV  RHNV+GI+EGVIK  AI +
Sbjct: 1345 AAAQATTLEYGNTTSLRAVVESCSALTKSRLVHLMLGPYRLKSHLRVLKKFLLHGQGDLMLTLIEVLGPELDKKATVICRHNVMGIVEGVIKTSAILQ 1442
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: A0A1V9YEE9_9STRA (Spindle pole body component n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEE9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-10
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   25 LEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            L + +    +A ++  +  TNA ++ ++   Y+L  H R LK++LL GQGD +  L+++LGPEL KRAT  YRHN++ ++E  + A
Sbjct:  419 LTFDHWMEFQAWIDRAARETNAYVIKILLDKYQLLDHCRALKQYLLLGQGDFIQYLMDLLGPELSKRATQLYRHNLMNVLETALNA 504
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: K3WEA1_GLOUD (Spindle pole body component n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEA1_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 2.580e-10
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   25 LEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            + +    +L  ++E  S  TN  L+  +   Y+L  H R LK++LL GQGD +  L+++LGPEL KRAT  YRH +  ++E  + +
Sbjct:  620 VHFAELINLEIMIEKVSKTTNEYLIRTLNEKYQLVDHCRALKRYLLLGQGDFIQYLMDLLGPELSKRATQIYRHTLTNVLETALNS 705
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: A0A2D4C6X9_PYTIN (Spindle pole body component n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6X9_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 3.470e-10
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   25 LEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            + +   +SL A++E  SA TN  L+  +   Y L  H R L++++L GQGD +  L+++L PEL KRAT  +RH ++ ++E  + A
Sbjct:  451 VRFAQLSSLEAMIEQVSASTNEFLIRTLTDKYSLLDHCRALRRYMLLGQGDFIQYLMDLLRPELSKRATQVHRHTLMNVLETALNA 536
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: W4G2J4_9STRA (Spindle pole body component n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2J4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-10
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   16 ATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            AT L + + T  +  + + +  TN  +  ++ G Y+L  H R LK++LL GQGD +  L+++L PEL KRAT  YRHN++ ++E  + A
Sbjct:  233 ATNLTFDHWTEFQQWIAAAANETNNYVTKILLGKYQLLEHCRALKQYLLLGQGDFIQYLMDLLQPELSKRATQIYRHNLMSVLETALNA 321
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: W4G4C6_9STRA (Spindle pole body component n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4C6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.590e-10
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   16 ATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            AT L + + T  +  + + +  TN  +  ++ G Y+L  H R LK++LL GQGD +  L+++L PEL KRAT  YRHN++ ++E  + A
Sbjct:  444 ATNLTFDHWTEFQQWIAAAANETNNYVTKILLGKYQLLEHCRALKQYLLLGQGDFIQYLMDLLQPELSKRATQIYRHNLMSVLETALNA 532
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: W4G2F7_9STRA (Spindle pole body component n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2F7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.720e-10
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   16 ATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKA 282
            AT L + + T  +  + + +  TN  +  ++ G Y+L  H R LK++LL GQGD +  L+++L PEL KRAT  YRHN++ ++E  + A
Sbjct:  444 ATNLTFDHWTEFQQWIAAAANETNNYVTKILLGKYQLLEHCRALKQYLLLGQGDFIQYLMDLLQPELSKRATQIYRHNLMSVLETALNA 532
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BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Match: A0A2T3ACP1_9PEZI (Spindle pole body component n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3ACP1_9PEZI)

HSP 1 Score: 65.9 bits (159), Expect = 4.750e-10
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   25 LEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLKKFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIK 279
            L YG+T +L A ++     T  RL+ LM   + L  HLR LK FLL GQGD ++ L+E L   LD+ A   YRH +   +EG I+
Sbjct:  476 LRYGDTATLEAWIDVAYKTTMQRLMDLMTNKFLLFKHLRALKSFLLMGQGDFVVLLMESLSANLDRPAGAQYRHTLTDKLEGAIR 560
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13303.2650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W3_ECTSI6.370e-4884.69Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
D7G6W1_ECTSI4.950e-4586.87Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
D7G720_ECTSI3.380e-4385.71NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A1V9YEE9_9STRA1.360e-1038.37Spindle pole body component n=1 Tax=Achlya hypogyn... [more]
K3WEA1_GLOUD2.580e-1037.21Spindle pole body component n=1 Tax=Globisporangiu... [more]
A0A2D4C6X9_PYTIN3.470e-1037.21Spindle pole body component n=1 Tax=Pythium insidi... [more]
W4G2J4_9STRA4.570e-1038.20Spindle pole body component n=1 Tax=Aphanomyces as... [more]
W4G4C6_9STRA4.590e-1038.20Spindle pole body component n=1 Tax=Aphanomyces as... [more]
W4G2F7_9STRA4.720e-1038.20Spindle pole body component n=4 Tax=Aphanomyces as... [more]
A0A2T3ACP1_9PEZI4.750e-1042.35Spindle pole body component n=1 Tax=Coniella lustr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13303contigEcto-sp13_S_contig13303:1506..2406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score167.5
Seed ortholog evalue3.8e-39
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
Model size369
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
Exons2
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
Cds size369
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.1816027-CDS-Ecto-sp13_S_contig13303:1505..17031681462711.1816027-CDS-Ecto-sp13_S_contig13303:1505..1703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13303 1506..1703 -
1681462711.1971793-CDS-Ecto-sp13_S_contig13303:2235..24061681462711.1971793-CDS-Ecto-sp13_S_contig13303:2235..2406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13303 2236..2406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13303.2650.1prot_Ecto-sp13_S_contig13303.2650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13303 1506..2406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13303.2650.1

>prot_Ecto-sp13_S_contig13303.2650.1 ID=prot_Ecto-sp13_S_contig13303.2650.1|Name=mRNA_Ecto-sp13_S_contig13303.2650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
QAAAQATRLEYGNTTSLRAVVESCSALTNARLVHLMPGPYRLESHLRVLK
KFLLHGQGDLMLTLIEVLGPELDKRATVTYRHNVVGIIEGVIKAGAIFRT
KRKTLPGSESRLSAVRSLTRER*
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mRNA from alignment at Ecto-sp13_S_contig13303:1506..2406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13303.2650.1 ID=mRNA_Ecto-sp13_S_contig13303.2650.1|Name=mRNA_Ecto-sp13_S_contig13303.2650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=901bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13303:1506..2406- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGCGGCCCAGGCCACAAGGCTGGAATACGGGAACACGACATCCCT
CAGGGCTGTGGTGGAGTCGTGCTCGGCCTTGACCAACGCCAGGCTCGTGC
ACCTCATGCCCGGGCCCTACCGACTAGAGTCGCACCTTCGCGTTCTCAAG
AAGTTTCTTCTCCACGGACAGGTGAGATTCACTAACCAAGGTGCGGTAGC
GGACACATGCCACCTCAACATACCTCTTCGGGTGTGTGTGATCCTTTGTC
ATGGCTAGAAGGATGGATGGGGCCGTCCAAGTAGGCGTTCTCCGTTCGTG
GCTGCATGTGTTTTTTTTTAACAGATCCTAGGTCTAGTGGCGCCGCCGAG
ATTCGAACCCACGTCCTCCAAGGTTGCCATATTGCGATTCTTTCTTTGTG
CGGTTCTCTTGCATGATGAAACCTTGGTTTGATTTTCGATTGGGTATGAA
GGTGGGGTCAACGCTGCATCCTCAGAGTGCGGCGAGGTGCTACACGATGC
TGCCCCCTTTTTCCTTGTGCTGCACAATGATGACCCTGTTCATCACGCTG
GTGCTGACTACTATTTCGGTATTTGTGATGTTTGCTGATTGTCGGTGCTG
CCTCCAAAGTGGTGCTGGATGACAATCGCTACCTTGATCCCACCTTCACA
TGCCTCAGTCTAACTTGTCATCGGCAACAACGGAACCGCCTTGGTCATGT
CAGGGAGATCTCATGCTCACCCTCATTGAAGTGCTCGGGCCAGAGCTTGA
CAAGAGGGCCACGGTAACATACCGGCACAACGTGGTGGGGATAATCGAGG
GCGTGATCAAGGCCGGCGCCATCTTCAGGACGAAGCGGAAGACGTTGCCA
GGATCGGAGTCAAGATTGTCGGCGGTTCGGAGTCTGACACGTGAGCGATG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13303:1506..2406-

>mRNA_Ecto-sp13_S_contig13303.2650.1 ID=mRNA_Ecto-sp13_S_contig13303.2650.1|Name=mRNA_Ecto-sp13_S_contig13303.2650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13303:1506..2406- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGCGGCCCAGGCCACAAGGCTGGAATACGGGAACACGACATCCCT
CAGGGCTGTGGTGGAGTCGTGCTCGGCCTTGACCAACGCCAGGCTCGTGC
ACCTCATGCCCGGGCCCTACCGACTAGAGTCGCACCTTCGCGTTCTCAAG
AAGTTTCTTCTCCACGGACAGGGAGATCTCATGCTCACCCTCATTGAAGT
GCTCGGGCCAGAGCTTGACAAGAGGGCCACGGTAACATACCGGCACAACG
TGGTGGGGATAATCGAGGGCGTGATCAAGGCCGGCGCCATCTTCAGGACG
AAGCGGAAGACGTTGCCAGGATCGGAGTCAAGATTGTCGGCGGTTCGGAG
TCTGACACGTGAGCGATGA
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