mRNA_Ecto-sp13_S_contig1330.2647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1330.2647.1
Unique NamemRNA_Ecto-sp13_S_contig1330.2647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1330.2647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1330contigEcto-sp13_S_contig1330:3547..4495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.0187738-UTR-Ecto-sp13_S_contig1330:3546..35491681462711.0187738-UTR-Ecto-sp13_S_contig1330:3546..3549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1330 3547..3549 -
1681462711.0702753-UTR-Ecto-sp13_S_contig1330:4465..44951681462711.0702753-UTR-Ecto-sp13_S_contig1330:4465..4495Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1330 4466..4495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.0386822-CDS-Ecto-sp13_S_contig1330:3549..35761681462711.0386822-CDS-Ecto-sp13_S_contig1330:3549..3576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1330 3550..3576 -
1681462711.0505507-CDS-Ecto-sp13_S_contig1330:3948..40741681462711.0505507-CDS-Ecto-sp13_S_contig1330:3948..4074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1330 3949..4074 -
1681462711.060347-CDS-Ecto-sp13_S_contig1330:4396..44651681462711.060347-CDS-Ecto-sp13_S_contig1330:4396..4465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1330 4397..4465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1330.2647.1prot_Ecto-sp13_S_contig1330.2647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1330 3550..4465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1330.2647.1

>prot_Ecto-sp13_S_contig1330.2647.1 ID=prot_Ecto-sp13_S_contig1330.2647.1|Name=mRNA_Ecto-sp13_S_contig1330.2647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MLGPEHSDLATRLSNRAVVLRAQWKIPEADSLSLRATEMGEKTLGPQHPD
HAAISTTRAWVLAAQGKNSEADR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1330:3547..4495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1330.2647.1 ID=mRNA_Ecto-sp13_S_contig1330.2647.1|Name=mRNA_Ecto-sp13_S_contig1330.2647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1330:3547..4495- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACCTTCGAGCTATCGAGATCGGAGAAGGATGCTAGGGCCTGAGCATTC
CGATCTTGCTACGAGGCTCAGCAACCGGGCTGTGGTGTTGCGGGCACAGG
TGAATGCATTGGTTGACCCGTCAGGTGGGGTGCGGAGCTGAGAATTGTTT
GTTTTCATTACATTTTTGTATCACTCTTCGGTTTCGGTGGGCCGATTCCC
GGGAATAGCAAAACCCTTGCCAAATGTGGAGTCTGATCACGCTGAGCCAT
CCTTAGGAGGGGGCAGAAGCCACCATGTAGTGGGAACATATTCTGAAACA
TTCGCGTGGTGACTAGTCGCCTAACAGCCAGGCCCGAACTTGTTTTTGTG
TTCGATTGTTTGTTCGCCGTGAGCTTCACTAGCCTTGACCACTTGCCTAT
CCAATTTCCTCGCCATGCCAGTGGAAAATTCCTGAGGCAGACTCTCTGTC
CCTTCGAGCTACCGAGATGGGGGAGAAAACGCTAGGCCCTCAGCACCCTG
ACCATGCTGCAATTTCCACTACTCGGGCGTGGGTGCTAGCGGCACAGGTT
AGAGCCGTCAGACATTGTCACTGAACATCGCGTGGCTACGGTTAGATCTT
TTTTCTAAACTGCTGACCAGGCAAGCAAAGTTGGGAGATTTCACGAAAGC
TTTCGCTTATCCAAGCATGTGTTTGTGAAATAATGCAACTTTTCCGGTAC
GCAACCCCCTTACCGCATCAGCCCTGTAGCTTGCTATAGACAGGAGGTAC
GCTCAGGCGGAGACGCGCGATGACCGGTCAGAGGCTATGCGAGATTCGGC
CCGCGGGCGGAAGCGTCCGAAAATACATACGTAGATCGAAGACCTCGCTT
TTTTGTTGAACCTGTAGCAGGACCGACAAGTCTTGAGCTCAATCCTCCTG
TACTTCCCTCGTGCTGTAGGGCAAGAATTCTGAGGCAGACCGTTGAGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1330:3547..4495-

>mRNA_Ecto-sp13_S_contig1330.2647.1 ID=mRNA_Ecto-sp13_S_contig1330.2647.1|Name=mRNA_Ecto-sp13_S_contig1330.2647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1330:3547..4495- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTAGGGCCTGAGCATTCCGATCTTGCTACGAGGCTCAGCAACCGGGC
TGTGGTGTTGCGGGCACAGTGGAAAATTCCTGAGGCAGACTCTCTGTCCC
TTCGAGCTACCGAGATGGGGGAGAAAACGCTAGGCCCTCAGCACCCTGAC
CATGCTGCAATTTCCACTACTCGGGCGTGGGTGCTAGCGGCACAGGGCAA
GAATTCTGAGGCAGACCGTTGA
back to top