mRNA_Ecto-sp13_S_contig13290.2637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13290.2637.1
Unique NamemRNA_Ecto-sp13_S_contig13290.2637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13290.2637.1 vs. uniprot
Match: D7FUN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 3.040e-71
Identity = 142/159 (89.31%), Postives = 144/159 (90.57%), Query Frame = 1 
Query:    1 REEGGSEASSLSPASAAMDYDAFVRWLSEGGGLDDALLGKVQRHLKARLSKAMDLRALFTEMCDDGSXXXXXXXXXXXXXXXXSSSNENRGTETTLSTSCLARGLRHAGLPLDRGLVSLLVATFSTSGGXXXXRSGRGRHRHHLVLSYADFHRMVNCEG 477
            REEG SE SS SPA+AAMDYDAFVRWLSEGGGLDDALLGKVQRHLKARLSKAMDLRALFTEMCDD  XXXXXXXXXXX     S+SNE RGTETTLSTS LARGLRHAGLPLDRGLVSLLVA FSTSG XXXXRSGRGRHRHH VLSYADFHRMVNCEG
Sbjct:  790 REEGDSEVSSSSPAAAAMDYDAFVRWLSEGGGLDDALLGKVQRHLKARLSKAMDLRALFTEMCDDXXXXXXXXXXXXXRDKRHSTSNEKRGTETTLSTSSLARGLRHAGLPLDRGLVSLLVAAFSTSGXXXXXRSGRGRHRHHPVLSYADFHRMVNCEG 948
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13290.2637.1 vs. uniprot
Match: A0A835YK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK05_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.320e-8
Identity = 43/140 (30.71%), Postives = 60/140 (42.86%), Query Frame = 1 
Query:   58 YDAFVRWLSEGGGLDDALLGKVQRHLKARLSKAMDLRALFTEMCDDGSXXXXXXXXXXXXXXXXSSSNENRGTETTLSTSCLARGLRHAGLPLDRGLVSLLVATFSTSGGXXXXRSGRGRHRHHLVLSYADFHRMVNCEG 477
            Y    +WL+   GLDDA L ++QRHL+ RL +A DLRA F EM                            G +  L+   L +GLR AGL ++R   + +V  F         R G GR      + Y +F R+V+   
Sbjct:  293 YKRLAKWLAPRPGLDDATLQRIQRHLRGRLGRAFDLRAQFQEMA---------------------------GGKGHLTAKTLEKGLRKAGLRVEREAAAAIVDAFD--------RDGDGR------MEYMEFQRLVHARS 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13290.2637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUN7_ECTSI3.040e-7189.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YK05_9STRA1.320e-830.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13290contigEcto-sp13_S_contig13290:1362..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score244.2
Seed ortholog evalue4.1e-62
Seed eggNOG ortholog2880.D7FUN7
Preferred nameMLC2
Model size478
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
Exons2
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Cds size477
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.25446-CDS-Ecto-sp13_S_contig13290:1362..16871681462710.25446-CDS-Ecto-sp13_S_contig13290:1362..1687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13290 1363..1687 -
1681462710.272358-CDS-Ecto-sp13_S_contig13290:1843..19951681462710.272358-CDS-Ecto-sp13_S_contig13290:1843..1995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13290 1844..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13290.2637.1prot_Ecto-sp13_S_contig13290.2637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13290 1363..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13290.2637.1

>prot_Ecto-sp13_S_contig13290.2637.1 ID=prot_Ecto-sp13_S_contig13290.2637.1|Name=mRNA_Ecto-sp13_S_contig13290.2637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
REEGGSEASSLSPASAAMDYDAFVRWLSEGGGLDDALLGKVQRHLKARLS
KAMDLRALFTEMCDDGSSSGGGGGSGGGRDKRHSSSNENRGTETTLSTSC
LARGLRHAGLPLDRGLVSLLVATFSTSGGGGGRRSGRGRHRHHLVLSYAD
FHRMVNCEG
back to top

mRNA from alignment at Ecto-sp13_S_contig13290:1362..1995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13290.2637.1 ID=mRNA_Ecto-sp13_S_contig13290.2637.1|Name=mRNA_Ecto-sp13_S_contig13290.2637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13290:1362..1995- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGGAGGGGGGTAGCGAGGCGTCATCGTTGTCACCAGCTTCTGCCGC
AATGGACTACGACGCATTCGTGCGGTGGCTGTCGGAAGGAGGTGGGCTGG
ATGACGCACTATTGGGGAAGGTTCAACGGCACCTCAAAGCTCGCCTCAGC
AAGTGAGACAGACACAACAACATATTGTCGTAGCACCATCACTTGCTTTT
TTCTTCCGTAGGGGAGCCAACAAGGAACCACAACCCCTTCCTCTCTCCGC
TTTGCCCCAAGAACCGATGAAACGAAAACCTCTGTAATTAAATACGAAAC
CCGGTCAGGGCAATGGACCTCCGGGCGCTGTTCACCGAGATGTGCGATGA
CGGTAGCAGCAGCGGAGGCGGCGGCGGCAGCGGCGGCGGCCGCGACAAAC
GACACAGCAGCAGCAACGAAAATAGGGGAACGGAGACCACACTCTCCACC
TCGTGCCTGGCGCGCGGCCTCCGGCACGCCGGCCTGCCGCTCGATCGGGG
TTTGGTAAGCCTTCTCGTGGCGACGTTTTCCACTTCCGGGGGAGGGGGCG
GGCGGCGGAGTGGCAGAGGGCGACATCGACACCACCTGGTGCTGTCCTAT
GCCGACTTCCATCGCATGGTTAACTGCGAAGGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13290:1362..1995-

>mRNA_Ecto-sp13_S_contig13290.2637.1 ID=mRNA_Ecto-sp13_S_contig13290.2637.1|Name=mRNA_Ecto-sp13_S_contig13290.2637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13290:1362..1995- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGGAGGGGGGTAGCGAGGCGTCATCGTTGTCACCAGCTTCTGCCGC
AATGGACTACGACGCATTCGTGCGGTGGCTGTCGGAAGGAGGTGGGCTGG
ATGACGCACTATTGGGGAAGGTTCAACGGCACCTCAAAGCTCGCCTCAGC
AAGGCAATGGACCTCCGGGCGCTGTTCACCGAGATGTGCGATGACGGTAG
CAGCAGCGGAGGCGGCGGCGGCAGCGGCGGCGGCCGCGACAAACGACACA
GCAGCAGCAACGAAAATAGGGGAACGGAGACCACACTCTCCACCTCGTGC
CTGGCGCGCGGCCTCCGGCACGCCGGCCTGCCGCTCGATCGGGGTTTGGT
AAGCCTTCTCGTGGCGACGTTTTCCACTTCCGGGGGAGGGGGCGGGCGGC
GGAGTGGCAGAGGGCGACATCGACACCACCTGGTGCTGTCCTATGCCGAC
TTCCATCGCATGGTTAACTGCGAAGGC
back to top