mRNA_Ecto-sp13_S_contig13288.2633.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13288.2633.1
Unique NamemRNA_Ecto-sp13_S_contig13288.2633.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A6H5JZI5_9PHAE (ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZI5_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 4.780e-153
Identity = 231/233 (99.14%), Postives = 231/233 (99.14%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIK SHSSDILEGIKK NYELTDDMQQKLASVCDEFTTSFTS
Sbjct:  319 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKASHSSDILEGIKKDNYELTDDMQQKLASVCDEFTTSFTS 551
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A836CH44_9STRA (ATP synthase subunit alpha n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH44_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 1.680e-133
Identity = 198/231 (85.71%), Postives = 217/231 (93.94%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSF 693
            QMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+G A GNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYELLKQ+QY P+EVE+QVVILFAGVKGF+D++ VN+V AYEKAWL HIKT+H  ++LEGIKK  YELT  M ++L+ +CD+FTT+F
Sbjct:  316 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMGAAMGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQNQYQPMEVEDQVVILFAGVKGFVDKIAVNQVQAYEKAWLEHIKTAHKDEVLEGIKKDKYELTKPMMERLSKICDDFTTAF 546
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A6V2WS15_HETAK (ATP synthase subunit alpha n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WS15_HETAK)

HSP 1 Score: 372 bits (954), Expect = 3.490e-124
Identity = 191/233 (81.97%), Postives = 207/233 (88.84%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ D  G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYELLKQ QY PLEVEEQVV+LFAGV+GFIDRVDV  VT +EKAWLAH K +H    L  IKK  Y ++D+M +K   +C+EFT+SF++
Sbjct:  316 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDTFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQPQYQPLEVEEQVVVLFAGVRGFIDRVDVAAVTDFEKAWLAHCKNNHYDATLGAIKKNKYAISDEMDKKFTELCEEFTSSFSA 548
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A6U4D8B6_9STRA (ATP synthase subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D8B6_9STRA)

HSP 1 Score: 370 bits (949), Expect = 1.470e-123
Identity = 194/233 (83.26%), Postives = 211/233 (90.56%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+GDA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ Q+ PLE EEQ+V+LFAGVKG++DRVDV  VTA+E AWL H+K+SHS DI++ IK + Y + D ++ KL  VCDEFTTSFTS
Sbjct:  308 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAFGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQPQFEPLETEEQIVVLFAGVKGYLDRVDVASVTAFETAWLNHVKSSHS-DIIDMIK-SKYVMDDAIEGKLHKVCDEFTTSFTS 538
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A7S3I9N8_9CILI (Hypothetical protein (Fragment) n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3I9N8_9CILI)

HSP 1 Score: 360 bits (923), Expect = 1.010e-122
Identity = 186/228 (81.58%), Postives = 207/228 (90.79%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFT 684
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ DASG GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYEL+KQDQY P+EVEEQVV+LFAGV+G+IDR+DV +VT +EKAWL  +K +HS  IL  IK    E++ ++  KLAS+CDEF+
Sbjct:   92 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDASGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVSGTMKLDLAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELIKQDQYQPMEVEEQVVVLFAGVRGYIDRIDVAQVTTFEKAWLDFVKANHSG-ILSEIKTKK-EISKELDAKLASICDEFS 317
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A7S2W4M6_9STRA (ATP synthase subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4M6_9STRA)

HSP 1 Score: 360 bits (923), Expect = 1.360e-119
Identity = 183/233 (78.54%), Postives = 213/233 (91.42%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ D +G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQY+EVAAFAKFGSDLDA+TQQQLNRGVRLYEL+KQDQY P+EVEEQV++LFAGV+G+IDR+DV +VT++EKAWL  +KT+HS  IL  IK    E++ D+  KL+++CDEF++S+++
Sbjct:  311 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQIKAMKQVSGTMKLDLAQYQEVAAFAKFGSDLDAATQQQLNRGVRLYELIKQDQYQPMEVEEQVLVLFAGVRGYIDRIDVAQVTSFEKAWLEFVKTNHSG-ILSEIKTKK-EISKDLDAKLSAICDEFSSSYSA 541
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A7S2BTT7_9STRA (ATP synthase subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTT7_9STRA)

HSP 1 Score: 357 bits (916), Expect = 2.710e-118
Identity = 186/233 (79.83%), Postives = 211/233 (90.56%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ DA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQ+ EVAAFAKFGSDLDA+TQQQLNRGVRL ELLKQDQYVP E EEQVVILFAGV+G+IDRVDV++V A+EKAWL  IK SH  D+L  IK+   E+T ++ +KL+++CD+F+++F+S
Sbjct:  330 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQIKAMKQVSGTMKLDLAQFTEVAAFAKFGSDLDAATQQQLNRGVRLQELLKQDQYVPYEAEEQVVILFAGVRGYIDRVDVSQVQAFEKAWLDFIKLSHP-DVLSTIKEQK-EITKELDEKLSALCDDFSSNFSS 560
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: F0YIV3_AURAN (ATP synthase subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIV3_AURAN)

HSP 1 Score: 354 bits (909), Expect = 4.830e-118
Identity = 182/233 (78.11%), Postives = 206/233 (88.41%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFY+HSRLLERAAK+G A+G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLE+ELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKL+LAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ QY PLE EEQV+ILFAGV+G+ID VDV+ +  YEKAWL H+KTSH  DI++ I    + ++D  + KL  VC++FT +F++
Sbjct:  267 QMSLLLRRPPGREAYPGDVFYIHSRLLERAAKMGKAAGLGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLENELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLDLAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQGQYQPLECEEQVIILFAGVRGYIDAVDVSAIQDYEKAWLDHVKTSHP-DIMKTIVGEGFVISDATEAKLGKVCEDFTAAFSA 498
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A482SHI5_9ARCH (H(+)-transporting two-sector ATPase n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482SHI5_9ARCH)

HSP 1 Score: 351 bits (901), Expect = 4.230e-117
Identity = 180/233 (77.25%), Postives = 203/233 (87.12%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+GDA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLD STQ+QLNRGVRLYELLKQ QY P+E+E+ VV LF GVKGF DRVDV KV+ + KAWL+ IKT+H   +++ + K  + +T D++  +  + +EFT S+T+
Sbjct:  246 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDALGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDPSTQKQLNRGVRLYELLKQGQYQPMEMEDIVVTLFIGVKGFADRVDVAKVSDFAKAWLSFIKTNHKEKVIDAMIKEKFTITKDIEATMIKLAEEFTASYTA 478
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BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Match: A0A8J2SM38_9STRA (ATP synthase subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM38_9STRA)

HSP 1 Score: 352 bits (902), Expect = 1.630e-116
Identity = 179/233 (76.82%), Postives = 204/233 (87.55%), Query Frame = 1 
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDILEGIKKANYELTDDMQQKLASVCDEFTTSFTS 699
            QMSLLLRRPPGREAYPGDVFY+HSRLLERAAK+G  +G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLE+ELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ QYVPLE EEQVVILFAGV+G+ID VDV+ +  YEKAWL H+K+SH   +++ I    Y ++D  ++KL + C+ FT  F++
Sbjct:  303 QMSLLLRRPPGREAYPGDVFYIHSRLLERAAKMGKMAGEGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLENELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVSGTMKLDLAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQAQYVPLECEEQVVILFAGVRGYIDAVDVSAIQDYEKAWLEHVKSSHGG-LIKAIVDDGYVISDATEEKLGAACEAFTAQFSA 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13288.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI5_9PHAE4.780e-15399.14ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxI... [more]
A0A836CH44_9STRA1.680e-13385.71ATP synthase subunit alpha n=2 Tax=Tribonema minus... [more]
A0A6V2WS15_HETAK3.490e-12481.97ATP synthase subunit alpha n=1 Tax=Heterosigma aka... [more]
A0A6U4D8B6_9STRA1.470e-12383.26ATP synthase subunit alpha n=1 Tax=Phaeomonas parv... [more]
A0A7S3I9N8_9CILI1.010e-12281.58Hypothetical protein (Fragment) n=1 Tax=Fabrea sal... [more]
A0A7S2W4M6_9STRA1.360e-11978.54ATP synthase subunit alpha n=1 Tax=Rhizochromulina... [more]
A0A7S2BTT7_9STRA2.710e-11879.83ATP synthase subunit alpha n=1 Tax=Dictyocha specu... [more]
F0YIV3_AURAN4.830e-11878.11ATP synthase subunit alpha n=1 Tax=Aureococcus ano... [more]
A0A482SHI5_9ARCH4.230e-11777.25H(+)-transporting two-sector ATPase n=2 Tax=cellul... [more]
A0A8J2SM38_9STRA1.630e-11676.82ATP synthase subunit alpha n=1 Tax=Pelagomonas cal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13288contigEcto-sp13_S_contig13288:109..2252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score446.4
Seed ortholog evalue8e-123
Seed eggNOG ortholog2880.D8LJM3
Preferred nameatp1
Model size702
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons4
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0056@1,KOG1353@2759
Cds size699
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.7888007-UTR-Ecto-sp13_S_contig13288:108..1111681462709.7888007-UTR-Ecto-sp13_S_contig13288:108..111Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13288 109..111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.8012226-CDS-Ecto-sp13_S_contig13288:111..3181681462709.8012226-CDS-Ecto-sp13_S_contig13288:111..318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13288 112..318 +
1681462709.8097432-CDS-Ecto-sp13_S_contig13288:693..9691681462709.8097432-CDS-Ecto-sp13_S_contig13288:693..969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13288 694..969 +
1681462709.8187258-CDS-Ecto-sp13_S_contig13288:1674..17821681462709.8187258-CDS-Ecto-sp13_S_contig13288:1674..1782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13288 1675..1782 +
1681462709.832626-CDS-Ecto-sp13_S_contig13288:2144..22521681462709.832626-CDS-Ecto-sp13_S_contig13288:2144..2252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13288 2145..2252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13288.2633.1prot_Ecto-sp13_S_contig13288.2633.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13288 112..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13288.2633.1

>prot_Ecto-sp13_S_contig13288.2633.1 ID=prot_Ecto-sp13_S_contig13288.2633.1|Name=mRNA_Ecto-sp13_S_contig13288.2633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQ
AGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQR
KCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQ
DQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKTSHSSDI
LEGIKKANYELTDDMQQKLASVCDEFTTSFTS*
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mRNA from alignment at Ecto-sp13_S_contig13288:109..2252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13288.2633.1 ID=mRNA_Ecto-sp13_S_contig13288.2633.1|Name=mRNA_Ecto-sp13_S_contig13288.2633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13288:109..2252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGTCTCTGCTGCTGCGCCGTCCCCCCGGCCGTGAGGCCTACCCGGG
AGACGTGTTCTACCTGCACTCCCGTCTGCTCGAGCGCGCGGCCAAGCTCG
GCGACGCCTCCGGCAACGGTTCGCTGACCGCCCTGCCCATCATCGAGACC
CAGGCCGGTGACGTGTCGGCGTACATCCCCACCAACGTTATCAGTATCAC
GGACGGACAGGTGCGGTTATTGGTTGGTATTTTTCTTTCTGTGGTTTTTT
GCTGGTGTTCTGCGGCGTGCTAGTCTGTAAGCATGCCCCTGTGATGTCTG
TGTGCGGCGTGCTAGTCTGTAGCATACCCCTGGCGACAGGAGATTCTTGT
TTTTCTCGTGACTGCGAAAATGCGTATCATGACTTTTTGGAAGCGTGTTA
TTGCCCACGAATGGGTTGGTCGCATCTCTTGCGTGTTGAGCTCCTGCCGA
ACTTTCCGGCAACGCCCCTCCCTGACTCATCTTGCTGCTCCTCCCTTACC
CCCCTCCCCAGTATTGTTATTACTCCATCCAAAAACGCTCCCCCTCCACC
CCCTTTTTTTTTTTTTTTTCCCGAACCCCCATCAGATCTTCCTCGAGTCC
GAGCTGTTCTACCAGGGCCAGCGTCCGGCAATCTCTGTGGGTCTCTCCGT
GTCCCGCGTGGGGTCCGCCGCACAGCGTAAGTGCATGAAGCAGGTGGCCG
GTACCATGAAGCTGGAGCTTGCGCAGTACCGTGAGGTCGCGGCGTTCGCC
AAGTTCGGATCTGACCTGGACGCCTCTACCCAGCAGCAGCTTAACCGGGG
GGTGCGGCTGTACGAGTTGCTGAAGCAGGACCAGTACGTGCCGCTCGAGG
TTGAGGAGCAGGTAATGCTTTGGTAGCTCGGTGTTGTTGTCGTTGGTGTT
GGTCTGGGTGTCGTTGTTGTTCGCATTGTTGATGTGAGTATATTTGTTCG
TGTTGGGTGCCTGTCGCAGATGTTGACTTTTTGGATGATTGCCTGCGTTG
GCGTCGTTTGTTGCGGATATATAGGGTATATACATGCACATATATTTCGT
CACGTGACACAGCTATTCCATCTCTATCCTAGGAAAGAGGCGACAATAGA
TCAGCAACGATTTTGATGGTGTGGTGCGGTGACCACCTTGTATTTTTACG
GTTTACCGAGCACCACACAGTGTGATATCTCCCCTCCCTGGGGATAAACA
GGCTTGTTGCTACGTTTTTCCCGATGTCAGTGTTGATGTGGGTTGTTGTT
TTTCTTGTTGTGATCACCAACGTGTCAATTTTTGGTCTTCCCAAGGGTAT
CCGTGGAGAGTATGTTTGGACAGTTAGTTGCATACCGTGGGTTGAGGGTA
TCCATCCACGGAGAGATGTTTGTACAAGCATGTTCCCTCACATATCATTG
CCCTGCTGCTTCGCATGGCATGTGTGGGCAAGTTGTAACTCGTGGGAGAT
GGAAGCGCGTGGAAGGCCCAGCCCAACTGGACCACACCTTGGATTTTGTC
TGCTCACTGGATTCTTGCTTTTGGTGTTGCGTGGTTGTTGGTTGGTTGTT
TCTCAACCGGACACAGGTGGTGATCCTGTTCGCGGGCGTGAAGGGCTTCA
TCGACCGCGTGGACGTGAACAAGGTTACCGCTTACGAGAAGGCGTGGCTG
GCCCACATCAAGACCTCTCACTCGGTGAGTCGGAAGGACGAAAAGGAGTA
GCGTGTTGTCGTCAATCCCCCCGCCTCCGTTTGATTCCCGCATGTTCGGT
CCGGAATTGTTCGTTCCGCGCGCTCGTGCGACGGAGTCGCTCGAACTTGC
CCGGTGTGGCACTCACATCTTTGTGATTTCCATTTAATGCGATGCTGCTG
CACATGCTGTGAGAAGATGCTGTGTACGTCGTAGCCGATTCATTGGTCCA
CTGGATGAAGTCGCCGCGTGCAGCCTAAACCCCCACCTTTACCTTTCGCT
TCGCTATGATGGTGTGGACTGGACTGACCTCCTCCGTTGTATGCGACGAT
GTCTAACCACGTGCGGTATCCGTCACAACAACACAGTCGGACATCTTGGA
AGGCATCAAGAAGGCCAACTACGAGCTCACCGACGACATGCAGCAAAAGC
TCGCCAGCGTCTGCGACGAGTTTACCACCTCCTTCACCAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13288:109..2252+

>mRNA_Ecto-sp13_S_contig13288.2633.1 ID=mRNA_Ecto-sp13_S_contig13288.2633.1|Name=mRNA_Ecto-sp13_S_contig13288.2633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13288:109..2252+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTGCTGCTGCGCCGTCCCCCCGGCCGTGAGGCCTACCCGGGAGA
CGTGTTCTACCTGCACTCCCGTCTGCTCGAGCGCGCGGCCAAGCTCGGCG
ACGCCTCCGGCAACGGTTCGCTGACCGCCCTGCCCATCATCGAGACCCAG
GCCGGTGACGTGTCGGCGTACATCCCCACCAACGTTATCAGTATCACGGA
CGGACAGATCTTCCTCGAGTCCGAGCTGTTCTACCAGGGCCAGCGTCCGG
CAATCTCTGTGGGTCTCTCCGTGTCCCGCGTGGGGTCCGCCGCACAGCGT
AAGTGCATGAAGCAGGTGGCCGGTACCATGAAGCTGGAGCTTGCGCAGTA
CCGTGAGGTCGCGGCGTTCGCCAAGTTCGGATCTGACCTGGACGCCTCTA
CCCAGCAGCAGCTTAACCGGGGGGTGCGGCTGTACGAGTTGCTGAAGCAG
GACCAGTACGTGCCGCTCGAGGTTGAGGAGCAGGTGGTGATCCTGTTCGC
GGGCGTGAAGGGCTTCATCGACCGCGTGGACGTGAACAAGGTTACCGCTT
ACGAGAAGGCGTGGCTGGCCCACATCAAGACCTCTCACTCGTCGGACATC
TTGGAAGGCATCAAGAAGGCCAACTACGAGCTCACCGACGACATGCAGCA
AAAGCTCGCCAGCGTCTGCGACGAGTTTACCACCTCCTTCACCAGCTAA
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