mRNA_Ecto-sp13_S_contig13287.2632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13287.2632.1
Unique NamemRNA_Ecto-sp13_S_contig13287.2632.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.640e-56
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    1 HRITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAKSLLEQIREAHQDYLRGLEGSTGA 327
            HRITEEFL+GFCRALKLSPQQQVAVALGLSRSANAAV+REGVKFL ARVPGLVGAGGGQLSLEALHSLLELVNSNEE+SEQPDLAKSLLEQIREAHQDYLRGL+GSTGA
Sbjct:  134 HRITEEFLAGFCRALKLSPQQQVAVALGLSRSANAAVSREGVKFLFARVPGLVGAGGGQLSLEALHSLLELVNSNEEVSEQPDLAKSLLEQIREAHQDYLRGLDGSTGA 242
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: D8LMN3_ECTSI (CNOT1_TTP_bind domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.800e-56
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    1 HRITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAKSLLEQIREAHQDYLRGLEGSTGA 327
            HRITEEFL+GFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQL+LEALHSLLELVNSNEE+ EQPDLAKSLLEQIREAHQDYLRGL+GSTGA
Sbjct:  134 HRITEEFLAGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLNLEALHSLLELVNSNEEVFEQPDLAKSLLEQIREAHQDYLRGLDGSTGA 242
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A8K1FFA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFA9_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 6.020e-8
Identity = 34/102 (33.33%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAKSLLEQIREAHQDYLRGLE 312
            +TE++L+ FC+ALKLS  QQV + L  ++  +   A E +KFL  ++P  +   G +L  + LHSL+ ++  N+E         S L  I  AH + +  +E
Sbjct:  109 VTEDYLTNFCKALKLSVPQQVTIGLSFAQGESKESASEAIKFLKTKIPE-ISTCGSKLPPDVLHSLVFVLRMNDEFRADFGETDSFLASISSAHPNDMSSME 209
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A6G0WJ63_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJ63_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.300e-7
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAK--SLLEQIREAHQDYLRGLE 312
            ITEEFL+ FC+ +KLS  QQ+ + L  ++S    VA+E + FL  ++P L    G +L  + LH+L+ L+ + E    Q DLA+  S L  I   H + +  LE
Sbjct:  102 ITEEFLTQFCKVIKLSLAQQITIGLSFAQSDVRGVAQEAIAFLKLKLPEL-SIAGSKLPPDVLHALVFLLRNEEAF--QTDLAQTDSFLAGIAAVHPNEMSSLE 202
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: W4FDD7_9STRA (Uncharacterized protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDD7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.840e-6
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAK--SLLEQIREAHQDYLRGLE 312
            ITEEFL+ FC+ +KL+  QQ+ + L  ++S   +VA E + FL  ++P L  AG  +L  + LHSL+ L+ + +    Q DLA+  S L  I   H + +  LE
Sbjct:  101 ITEEFLTQFCKVIKLNLAQQITIGLSFAQSEVRSVALEAIAFLKLKLPELSMAGS-KLPPDVLHSLVFLLRNEDAF--QSDLAQTDSFLAGIAAVHPNEMSSLE 201
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A6A5AGL3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGL3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.300e-6
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAK--SLLEQIREAHQDYLRGLE 312
            ITEEFL+ FC+ +KL+  QQ+ + L  ++S    VA E + FL  ++P L  AG  +L  + LHSL+ L+ + +    Q DLA+  S L  I   H + +  LE
Sbjct:  101 ITEEFLTQFCKVIKLNLAQQITIGLSFAQSEVRGVALEAIAFLKLKLPELSMAGS-KLPPDVLHSLVFLLRNEDAF--QSDLAQTDSFLAGIAAVHPNEMSSLE 201
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A024TAM4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAM4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.510e-6
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAK--SLLEQIREAHQDYLRGLE 312
            ITEEFL+ FC+ +KL+  QQ+ + L  ++S    VA E + FL  ++P L    G +L  + LHSL+ L+ + +    Q DLA+  S L  I   H + +  LE
Sbjct:  101 ITEEFLTQFCKVIKLNLAQQITIGLSFAQSEVRGVALEAIAFLKLKLPEL-SLAGSKLPPDVLHSLVFLLRTEDAF--QADLAQTDSFLAGIAAVHPNEMSSLE 201
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BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Match: A0A485LT77_9STRA (Aste57867_23829 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LT77_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-5
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    7 ITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVPGLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAKS--LLEQIREAHQDYLRGLE 312
            ITE+FLS FC+ +KL+  QQ+ + L  ++S    VA E + FL  ++P L    G +L  + LH+L+ L+ + E    Q DLA++   L  I   H + +  LE
Sbjct:  104 ITEDFLSQFCKVIKLNLAQQITIGLSFAQSEVRGVALEAIAFLKLKLPEL-SMTGSKLPPDVLHALVFLLRNEEAF--QADLAQTDGFLAGIAAVHPNEMSSLE 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13287.2632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JXN6_9PHAE1.640e-5695.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN3_ECTSI1.800e-5695.41CNOT1_TTP_bind domain-containing protein (Fragment... [more]
A0A8K1FFA9_PYTOL6.020e-833.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WJ63_9STRA5.300e-737.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FDD7_9STRA1.840e-637.50Uncharacterized protein n=14 Tax=Aphanomyces astac... [more]
A0A6A5AGL3_9STRA2.300e-637.50Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024TAM4_9STRA2.510e-636.54Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485LT77_9STRA1.190e-535.58Aste57867_23829 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13287contigEcto-sp13_S_contig13287:1627..3116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score198.4
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D8LMN3
Model size331
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
Exons3
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
Cds size327
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.736747-CDS-Ecto-sp13_S_contig13287:1628..17121681462709.736747-CDS-Ecto-sp13_S_contig13287:1628..1712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13287 1629..1712 -
1681462709.7477784-CDS-Ecto-sp13_S_contig13287:2469..26841681462709.7477784-CDS-Ecto-sp13_S_contig13287:2469..2684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13287 2470..2684 -
1681462709.7583044-CDS-Ecto-sp13_S_contig13287:3088..31161681462709.7583044-CDS-Ecto-sp13_S_contig13287:3088..3116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13287 3089..3116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13287.2632.1prot_Ecto-sp13_S_contig13287.2632.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13287 1629..3116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13287.2632.1

>prot_Ecto-sp13_S_contig13287.2632.1 ID=prot_Ecto-sp13_S_contig13287.2632.1|Name=mRNA_Ecto-sp13_S_contig13287.2632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
HRITEEFLSGFCRALKLSPQQQVAVALGLSRSANAAVAREGVKFLVARVP
GLVGAGGGQLSLEALHSLLELVNSNEELSEQPDLAKSLLEQIREAHQDYL
RGLEGSTGA
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mRNA from alignment at Ecto-sp13_S_contig13287:1627..3116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13287.2632.1 ID=mRNA_Ecto-sp13_S_contig13287.2632.1|Name=mRNA_Ecto-sp13_S_contig13287.2632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13287:1627..3116- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGCATCACCGAAGAGTTTCTGTCAGGTGCGTGTCCTTTGGGGTGTAT
TGGTGTGTGCATGCCGGCGCTCGCTGGAAGGTGTTGTTTTTCAGATGTGA
TGAGCGGAGGCATGTAGTTTGTCTCAAAGTCGTGGCATGTGTGGTCTTGT
GTCGTGAACAATGGAAGGGGTGCGTGATATGTCGTTAGCATATGTATCAT
AGTTTGTTTTTTCTGCACACATTCGCAACATGCCTTTTTTCCCTGCAACC
TCATGCGCGGCTCCACTCTCAGCGGGGGGGGGGGGTGCACCGTATCGAGA
GTTACTGTCGGCGCGTCCTGTTTCGAACCAGTGGGCGCGCCCGATGGCAA
CTAAGTCAACACACAAATGTTAAGATACCAACACCAAAACACGCATACAC
GCCCTCGCGTTGCGCGCCCGCACGATCAACAGGCTTTTGTCGAGCGTTGA
AGCTCTCGCCTCAGCAGCAAGTCGCTGTCGCGCTCGGGCTTTCGCGCTCG
GCGAACGCCGCGGTCGCAAGGGAAGGGGTCAAGTTCCTCGTCGCACGAGT
GCCGGGGCTTGTCGGGGCGGGAGGCGGACAACTTAGCCTGGAGGCTCTGC
ACTCGCTGCTGGAGCTTGTGAACTCGAACGAGGAACTTTCTGAGCAGGTG
GGAGGAGAGGAGGAGGGGGGGAGGAAGCCTACGGTCTGAGCGAGGGCTCT
CTAAATGTTGACGAAGATGGTTTACTTTCCGCATCGTGGGCCGTCTTTCC
ATCCGTGGGTACAGGCCATCATTTGGAGGCGTATGTGTTCCTGTCAGCAT
AGAAAAGTGGAAACCTGGGGTGGTAACCGCATGTTGCGGACACCCTTCCT
CTTGAAAACTTCCGTTTCCATGTCATCACCGACTGTCGTTTTCGCTATTG
TACTACTTAACAGTCCTGCGAAGCGAATATGAAAAATAGATTAAGGACAT
CGTGTTGATCTCCGAAGCATTCCTCTCGCCACAAAGCCGGCGTTTGGCCC
TCACCGAAAATAATGGACAGCAGGGCGTGGGGGGGGTCCGAATCGTGGTT
GTCATTTGCCCTAGCTGACTGGCAACGAGAGCACTTGGACCGGTCGATAA
CCCCGCTCCTCGCGTCTGCACTCCGTCGGTTATTGTCTCTTTTGCCGCAC
TCTTTCACGGCTCGAAGGCAGCTGCGAACGATCAGAGCCGAGAACACAAA
ACTTTCAACGAGTTTTCGTGGACCTGTCAATTTTTTCCCTCCCGTATGAG
TCTCCCTCCTCACACCATTTTCGGGGATGTAGAGATAACTGTTTTTGGTT
TTTGGTGAACGTGATTTTGTCGGAAGGACAACCAACTCATGGTTCCTCCC
CCTAACCACCTAACATCACATCATGGGACCACGCGCGATCCCTTCCGCCC
ACAGCCGGACTTGGCAAAGTCGCTGCTGGAACAGATCAGGGAAGCCCACC
AAGACTACCTCAGGGGCCTAGAAGGGTCCACGGGCGCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13287:1627..3116-

>mRNA_Ecto-sp13_S_contig13287.2632.1 ID=mRNA_Ecto-sp13_S_contig13287.2632.1|Name=mRNA_Ecto-sp13_S_contig13287.2632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13287:1627..3116- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGCATCACCGAAGAGTTTCTGTCAGGCTTTTGTCGAGCGTTGAAGCT
CTCGCCTCAGCAGCAAGTCGCTGTCGCGCTCGGGCTTTCGCGCTCGGCGA
ACGCCGCGGTCGCAAGGGAAGGGGTCAAGTTCCTCGTCGCACGAGTGCCG
GGGCTTGTCGGGGCGGGAGGCGGACAACTTAGCCTGGAGGCTCTGCACTC
GCTGCTGGAGCTTGTGAACTCGAACGAGGAACTTTCTGAGCAGCCGGACT
TGGCAAAGTCGCTGCTGGAACAGATCAGGGAAGCCCACCAAGACTACCTC
AGGGGCCTAGAAGGGTCCACGGGCGCG
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