mRNA_Ecto-sp13_S_contig13271.2631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13271.2631.1
Unique NamemRNA_Ecto-sp13_S_contig13271.2631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13271.2631.1 vs. uniprot
Match: D7G4W1_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 5.980e-70
Identity = 150/177 (84.75%), Postives = 150/177 (84.75%), Query Frame = 1 
Query:    1 MMRRHALAGGGGLLSLGMVWSQAMCAKASNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGGRASSAGVDVGTKGIRRGSQQRRLCGGGDGEDGRGRAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRGGVRCGVVLHVAW 531
            MMRRHALAGGGGLLSLGMVWSQAMCAKASNGH X  XXXXXXXXXXXXXXXXXXXX                FGGRASSAGVD GTKGIR GSQQRRLCGGGDGE G GRAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRGG   GVVLHV W
Sbjct:    1 MMRRHALAGGGGLLSLGMVWSQAMCAKASNGHGXHSXXXXXXXXXXXXXXXXXXXXA--------------TFGGRASSAGVDAGTKGIRPGSQQRRLCGGGDGEGGGGRAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRGGAEYGVVLHVPW 163
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BLAST of mRNA_Ecto-sp13_S_contig13271.2631.1 vs. uniprot
Match: A0A6H5JEM8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM8_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.060e-63
Identity = 122/176 (69.32%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:    1 MMRRHALAGGGGLLSLGMVWSQAMCAKASNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGGRASSAGVDVGTKGIRRGSQQRRLCGGGDGEDGRGRAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRGGVRCGVVLHVA 528
            MMRRHALAGGGGLLSLGMVWSQAMCAKASNGH                                       AFG RASSAGVD GTKGIRRGS QRRLCGGGD EDG  RAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRG     V++ +A
Sbjct:    1 MMRRHALAGGGGLLSLGMVWSQAMCAKASNGHSHHSAFASAPPRPSGSSAVGVGAGA--------------AFGDRASSAGVDAGTKGIRRGSHQRRLCGGGDDEDGGARAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQLSVATPPEVNKNYRGNT--SVLVRIA 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13271.2631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4W1_ECTSI5.980e-7084.75Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEM8_9PHAE1.060e-6369.32Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13271contigEcto-sp13_S_contig13271:1772..4773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score236.5
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D7G4W1
Model size883
KEGG rclassRC00296
KEGG koko:K06167
KEGG ReactionR10205
KEGG Pathwayko00440,map00440
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0016787
Exons6
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2QWBK@2759,COG1235@1
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-20_000110.1
EC3.1.4.55
Cds size570
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13271.2631.1prot_Ecto-sp13_S_contig13271.2631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13271 1772..4173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.6491692-CDS-Ecto-sp13_S_contig13271:1771..18521681462709.6491692-CDS-Ecto-sp13_S_contig13271:1771..1852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13271 1772..1852 +
1681462709.6592214-CDS-Ecto-sp13_S_contig13271:2664..29781681462709.6592214-CDS-Ecto-sp13_S_contig13271:2664..2978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13271 2665..2978 +
1681462709.6682942-CDS-Ecto-sp13_S_contig13271:3391..34871681462709.6682942-CDS-Ecto-sp13_S_contig13271:3391..3487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13271 3392..3487 +
1681462709.682501-CDS-Ecto-sp13_S_contig13271:4094..41731681462709.682501-CDS-Ecto-sp13_S_contig13271:4094..4173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13271 4095..4173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.691309-UTR-Ecto-sp13_S_contig13271:4173..42721681462709.691309-UTR-Ecto-sp13_S_contig13271:4173..4272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13271 4174..4272 +
1681462709.701739-UTR-Ecto-sp13_S_contig13271:4399..45911681462709.701739-UTR-Ecto-sp13_S_contig13271:4399..4591Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13271 4400..4591 +
1681462709.7118347-UTR-Ecto-sp13_S_contig13271:4751..47731681462709.7118347-UTR-Ecto-sp13_S_contig13271:4751..4773Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13271 4752..4773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13271.2631.1

>prot_Ecto-sp13_S_contig13271.2631.1 ID=prot_Ecto-sp13_S_contig13271.2631.1|Name=mRNA_Ecto-sp13_S_contig13271.2631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MMRRHALAGGGGLLSLGMVWSQAMCAKASNGHGHHAAFASAPPRPSGSSA
VGVGAGAGAGAGAGAGAGAGAAFGGRASSAGVDVGTKGIRRGSQQRRLCG
GGDGEDGRGRAGRRDHSQLIFVGAGSSTAVPSAFLLLHPELDTKQTAIAQ
LSVATPPEVNKNYRGGVRCGVVLHVAWVWDMYRYSQAQR*
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mRNA from alignment at Ecto-sp13_S_contig13271:1772..4773+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13271.2631.1 ID=mRNA_Ecto-sp13_S_contig13271.2631.1|Name=mRNA_Ecto-sp13_S_contig13271.2631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13271:1772..4773+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGGAGACACGCTCTAGCCGGCGGAGGAGGCCTCCTAAGCCTCGG
CATGGTTTGGAGCCAGGCTATGTGCGCAAAGGTTGGTGATGTTGCATCAT
GATGGTTTTGTCCGGCGTCGCTGTTGTCTGTACTGCTTCAAATTCGGGCT
TGCATTGCACTCCAGGTAGGCCACCATGCATGCCCACCATGCATGTCGCT
GCTTGATGTCCCAGGTGCTCTCTCCTTCTCACCTTCACGTAACACAAGTG
GAGCCTGACATATACACGTACACAAGAATTGAAGTATGACGTATGATACC
ACACGCCCTTCGGCGAATTGGCCCTATCCAGTACAGGCAGTAGCTCCGGA
CAGAAATGAGAGGGTATCGAAGTCGAACCACAGAGCCTGTCGTACACATC
CTTACGGTATTGTCCAAGTCCCGTTGCCCGGCAGTGTGAGCAGCAGCATT
GAGCAACGGCATTTCCACATGGCGCTTGCGCGACCTTCAGCGCAGTGGAC
GATGCTTGTACGCAGTAACACACACATGCATGTAGTGTTTTGTTTTGCCT
GGTATTCTCGTCTTCTTATTTCGTACTCCCAGAAAATATTCACAGAACCA
TATGAATTGATAAGCCAGTGTTGTAGCCATCTGTCGCGGTTCTCGACGGA
GCTACTGCTTTTATAGCGTGGACGCAGACTCTGTTGAAGTTCACACCGTA
ACATTTTTTTGCCGTGCATCAAACAGACGGCATGAGCCCCTCGTTGTGTA
CACAGTGCGGTATTCCAGTACTGTTGTGGTACTATTGTACAGTAGTACTA
TTGTATTACCCTACGCGTTCACTCCTGCACGGGAACAGAGCAACGTGCGC
TGGCGCTGCTGACACCGTTGACTGCTTCGTGTTCAATCGCTAGGCGAGCA
ACGGACACGGTCACCATGCGGCCTTCGCCTCCGCCCCGCCGCGACCTTCT
GGAAGTTCCGCCGTTGGCGTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGCCTTTGGTGGTCGTGCTAGTAGCG
CGGGGGTTGACGTAGGGACGAAGGGGATTCGGCGCGGCAGCCAGCAGAGG
AGGCTTTGTGGTGGGGGTGACGGCGAGGACGGGAGAGGGCGGGCTGGAAG
GCGTGATCACTCTCAGCTGATATTCGTGGGGGCGGGGTCCAGCACGGCCG
TTCCTAGGTAACTTCTTGTGGAAACCGTCTGGAAATTAATCGTAAACCAA
TTCGAGTCCTGGTGTTTTCTCCCTGATTTTGGGCGAATTGCCGCACTCGA
CCTGACAAGTTTGGCCTCTATTCTTCAATCGCGATAGCCGTTGCGGCGAA
AATAGCCGGCGAAGAGGGAAATCTAGAGCTGTTCAGCCCAGCTACGGCTG
TCGATCTCTTGCTTTCAAGCACTCAGCATCCGTCTTTTCTTTCGGCGATT
GTGTGGTGTTGGCCCGTCCGCGCAGTGTCAAGTAGGATAAAGAGGCGTTT
TCGCACCGTTGATACCATTGCTCTCGTCAGCGTCGTCGCCGTCATGTTTG
TCGTCGTTGTCACTTCCTTGTGTTAATTGCAAGCACCGCCCCCGTTTGTG
CATCTATGTTGGCAAATCAGCGCCTTTCTCCTTCTCCACCCGGAGCTGGA
CACTAAGCAGACGGCGATCGCTCAGCTGTCGGTGGCGACACCACCAGAAG
TAAACAAAAACTACAGGTACGGGCCGTATCGTTTGGGTGATGTACTGCTT
CGCTTGGTGTGCGTGCTTGAAACTGAGCCAAGGCATTAAGCCTGCCTCCG
TTGAGCTACGTACAGTCGAGCAGGCTGACAGCAGCAAAGACTAGCGACTC
CACCAACAACAGTAGCAGTCACGTGGATCGAAGTACCAATTTGAGAGAAC
CACGTGCATCGTTTGTGTATTTGGTACTGCGCAGACGACTCTCCGCTGGT
TGATCGTTAGGCCTCCAGAAATTATCTGGTATCTGATGCGATGCTGGTAA
TGGAAATTTCGGGACGAACCGCGTTTCCAAGTAAGCAGCACGGCGCGTTC
CCTGGTATCACTTCGCCGTCGACATCAAGGACGTCGAGACTCCAGCAGCA
TTGATATTGCCAAGCACTGTTGTAGCTTTGCCTACCACAGGCTTAGGGAA
CTCGGTCTGCCACCCCTTCCCCCCCCCCCCGAAGTTCGCTTTTTCGTGCC
GACGAAAGTAGCAAGGTGCCGATGACCCTTGTAGGGTTTCCCTTGGTGGC
GCGGCGGTAGCGTTTCGATATTCTTCACAAACGGAGATCATTTGGACTTG
CGGTCAACGTCGCGAGGAGTAAGGGGTGGTGTGAGATGTGGGGTGGTGCT
GCACGTGGCCTGGGTATGGGATATGTATCGCTACTCCCAAGCTCAAAGAT
GATTCAAGAATAGAGTACAAGGTGCGCTTCTCCGTGCGAAAGCACAAGTT
GACGATGTGGTCTCATTTCTACTGCTTCGCGAGAGCGCTTATTCCAGGTG
GGTTGCGAGCACAGCAGCGGTGTTCTTGAAGCAAGACGTATTTATCGCCG
TGTTGTGCGGGTAGAACGACAACGATTTCTTATCTGCGTAGCCTACTCGT
ACGTCCAACGATTGACTTGTCCCCCTAGGGGCAACACGTCCGTGCTAGTG
AGAATAGCCAAGGAGAGGCGGGTAACTCCCAACAGCGACAGCGGCGATAG
TGATGGGCGGTCACAAGCGGAAGAGGTCACGAGTGAGGGGCGGAGCAACA
CGCAAGTCAAGCACGTGCAGATAGACACAGGGAAGACATGGCGGGAAGGC
GCCATCAGATGGTTCCCGAGGTGCGGACCAGCATTGCATCACGCTCCGCT
GAAACAGTTCACGTTAAGGGCATTGACCTGTTGGTCCACTCGTGTTGCCC
GTACGGCTTTCAACGGCGATAGATCTGAGTGTTTGGGACGCTTGTCCTCT
GACCACTGTTGTGAACTACCTGCTATCCAGACACGGGGTGCGTGGATTGG
AC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13271:1772..4773+

>mRNA_Ecto-sp13_S_contig13271.2631.1 ID=mRNA_Ecto-sp13_S_contig13271.2631.1|Name=mRNA_Ecto-sp13_S_contig13271.2631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13271:1772..4773+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGGAGACACGCTCTAGCCGGCGGAGGAGGCCTCCTAAGCCTCGG
CATGGTTTGGAGCCAGGCTATGTGCGCAAAGGCGAGCAACGGACACGGTC
ACCATGCGGCCTTCGCCTCCGCCCCGCCGCGACCTTCTGGAAGTTCCGCC
GTTGGCGTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TGGTGCTGGTGCTGCCTTTGGTGGTCGTGCTAGTAGCGCGGGGGTTGACG
TAGGGACGAAGGGGATTCGGCGCGGCAGCCAGCAGAGGAGGCTTTGTGGT
GGGGGTGACGGCGAGGACGGGAGAGGGCGGGCTGGAAGGCGTGATCACTC
TCAGCTGATATTCGTGGGGGCGGGGTCCAGCACGGCCGTTCCTAGCGCCT
TTCTCCTTCTCCACCCGGAGCTGGACACTAAGCAGACGGCGATCGCTCAG
CTGTCGGTGGCGACACCACCAGAAGTAAACAAAAACTACAGGGGTGGTGT
GAGATGTGGGGTGGTGCTGCACGTGGCCTGGGTATGGGATATGTATCGCT
ACTCCCAAGCTCAAAGATGA
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