mRNA_Ecto-sp13_S_contig13265.2627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13265.2627.1
Unique NamemRNA_Ecto-sp13_S_contig13265.2627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13265.2627.1 vs. uniprot
Match: A0A6H5J7J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.780e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 3 
Query:  258 EKYSDAIQLLERARSIQKDALGENHPDTVCTQNYLELVRKE 380
            E+Y+DA+ LLERA SI+   LGENHPDTV TQN L++VR++
Sbjct:    2 EQYTDAVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRRK 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13265.2627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7J8_9PHAE6.780e-963.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13265contigEcto-sp13_S_contig13265:2269..3607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size490
Hectar predicted targeting categorymitochondrion
Exons3
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.4216044-UTR-Ecto-sp13_S_contig13265:2268..23811681462709.4216044-UTR-Ecto-sp13_S_contig13265:2268..2381Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13265 2269..2381 +
1681462709.4609556-UTR-Ecto-sp13_S_contig13265:3503..36071681462709.4609556-UTR-Ecto-sp13_S_contig13265:3503..3607Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13265 3504..3607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.4335625-CDS-Ecto-sp13_S_contig13265:2381..25251681462709.4335625-CDS-Ecto-sp13_S_contig13265:2381..2525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13265 2382..2525 +
1681462709.4425411-CDS-Ecto-sp13_S_contig13265:3263..33861681462709.4425411-CDS-Ecto-sp13_S_contig13265:3263..3386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13265 3264..3386 +
1681462709.4518795-CDS-Ecto-sp13_S_contig13265:3497..35031681462709.4518795-CDS-Ecto-sp13_S_contig13265:3497..3503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13265 3498..3503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13265.2627.1prot_Ecto-sp13_S_contig13265.2627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13265 2382..3503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13265.2627.1

>prot_Ecto-sp13_S_contig13265.2627.1 ID=prot_Ecto-sp13_S_contig13265.2627.1|Name=mRNA_Ecto-sp13_S_contig13265.2627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MAKANHATMAKAHRPMMATAVVRATTTAATPTTGTTTTKDLGKLSIKSEK
YSDAIQLLERARSIQKDALGENHPDTVCTQNYLELVRKEV*
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mRNA from alignment at Ecto-sp13_S_contig13265:2269..3607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13265.2627.1 ID=mRNA_Ecto-sp13_S_contig13265.2627.1|Name=mRNA_Ecto-sp13_S_contig13265.2627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13265:2269..3607+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAACATGGATCGTCTCCTCAACGACGTCCCCCACACGCCGTCTTCTG
AGTTTATTGTTGCAGCCATTGGTCGACCTTCTCCTACTTTTGACATTCAA
CTACCTCGTCACCATGGCCAAGGCCAACCATGCAACAATGGCAAAAGCAC
ATCGCCCAATGATGGCGACAGCAGTTGTGCGGGCAACAACAACAGCGGCA
ACGCCAACAACGGGAACAACAACAACCAAGGATCTTGGCAAACTATCAAT
TAAATCGGTGATGGGGCATGCCTACTGAATGCATTGCCCGTCGAGTTTTC
AACGACTCACCATGCACCCACTGGTCAGAACGCAACTCATCGACCACATG
AACGACAACCTCCATAACCCGTTACCAGGCTCTGGACAAAACAATTTTTA
CGTTTCCATCTTTGCTGGAATAATTTCAGAGAATATTCAAGTAGCTGGTC
AACCTGAAAAACCCTACCAAAGTATCCCGGAATACCTCTATCTCATGTCT
GTTCCAACTGCCTATGTTACCCATGTCGAGATTGCAGCTGCCCAACAGTT
GTGCAGCCTTAAGCTAAGAAGTGCCCTCCTCGTCGGCCAACCCTTTCCAC
CTCCTCTGTCCCATGATACATGCGATGTTTTGTACGGGGGGCGAGCACTA
TAGAAGATATAAACTTCTGTTGTCCATGACTTCTCACCCTCCTTTTCTAC
TTGCATCACCTCCGGGGAACCTTGGAGACTACGTATTTTCCACAATACTA
ACATTAAAAATGTCTCATGACACGACCACAATCCTGTGAGTACATCTACA
GCATGATTCGCCAACCAGTACCAGATGTATTCTTTTTTTCGCAGTTTCGC
TGTCCAACCCTCTTGTGTAAAACAACTGCTTGTTTTGTCCTACCCAGTAC
CCGGACCTGGTAATTTGCTTCCAAGTGTCCTTCGCAAGTGATATTGATAC
GTATGTTTCGATTTACCTACCATCCCACACCTCAAACGTCCACAGGAGAA
GTACAGCGATGCAATTCAACTACTGGAGAGAGCCCGCTCAATCCAAAAGG
ACGCGCTGGGGGAGAACCACCCAGACACGGTCTGCACCCAAAACTACCTG
GAACTTGTGCGAAAAGAGGTTTGTGTGCCGCGGTAGGTCTGTCTGGTAGG
CAAACCTCGCCCATACATCACAACGCGCAGGCCTGGGCACTGCTAAAAAC
GAATCTGAATGTTGTATTTCGTACTGCAGGTGTGACGGACACACGATGTC
GAAGATGCAGCCTGCGACCGACACAAGACAACGAAGGGGGGAAGACTAAC
CCCCGTGGGCAAGATGTGCCGTGTGTTGATTGGGGTATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13265:2269..3607+

>mRNA_Ecto-sp13_S_contig13265.2627.1 ID=mRNA_Ecto-sp13_S_contig13265.2627.1|Name=mRNA_Ecto-sp13_S_contig13265.2627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13265:2269..3607+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAAGGCCAACCATGCAACAATGGCAAAAGCACATCGCCCAATGAT
GGCGACAGCAGTTGTGCGGGCAACAACAACAGCGGCAACGCCAACAACGG
GAACAACAACAACCAAGGATCTTGGCAAACTATCAATTAAATCGGAGAAG
TACAGCGATGCAATTCAACTACTGGAGAGAGCCCGCTCAATCCAAAAGGA
CGCGCTGGGGGAGAACCACCCAGACACGGTCTGCACCCAAAACTACCTGG
AACTTGTGCGAAAAGAGGTGTGA
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