mRNA_Ecto-sp13_S_contig13254.2622.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13254.2622.1
Unique NamemRNA_Ecto-sp13_S_contig13254.2622.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 492 bits (1267), Expect = 3.260e-171
Identity = 241/324 (74.38%), Postives = 264/324 (81.48%), Query Frame = 2 
Query:   92 AFLASPPAVDGATVKFEHDLRTGDDVGSDNNCVNSQARKVRYLQIEGFDENSSP*MQMTWRQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNN-LDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGND--PAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            AFLAS P V+G  VK   DLRTGDD  SDNNCV+S+ARKVRYLQIEGFD NSSP MQMTWRQLTDECGNA+ DGF ETV YDG  I   DRLQ+DMYICAPWGN ELE+VSKSTNG   MEKI+WEVEYGPDEYHIWDTLNTP +++ LDYAPIPSG G EETF +PL+         +EGYYSVMYSGPFPPL+C++ LHP+ + YEGCY AGIFGT  G TG+ ND  PAENYRM+DGI D GV AD KVMTL+KCA  C A+G  YFGLESAVKCLCGD LVG+PT D YGDGGSVCGI ITFGGDVPEYKYLCSGDSRVL
Sbjct:   10 AFLASVPGVEG--VKAIFDLRTGDDYESDNNCVDSEARKVRYLQIEGFDYNSSPWMQMTWRQLTDECGNAVTDGFSETVTYDGDSIEDGDRLQMDMYICAPWGNYELELVSKSTNGGNAMEKIAWEVEYGPDEYHIWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEG--------SEGYYSVMYSGPFPPLECSN-LHPSGITYEGCYSAGIFGTADGPTGSANDADPAENYRMFDGIDDDGVNAD-KVMTLEKCAATCTAQGTQYFGLESAVKCLCGDELVGSPTDDVYGDGGSVCGIDITFGGDVPEYKYLCSGDSRVL 321
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 494 bits (1271), Expect = 8.840e-169
Identity = 242/324 (74.69%), Postives = 264/324 (81.48%), Query Frame = 2 
Query:   92 AFLASPPAVDGATVKFEHDLRTGDDVGSDNNCVNSQARKVRYLQIEGFDENSSP*MQMTWRQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNN-LDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGND--PAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            AFLAS PAVDG  VK   DLRTGDD  SDNNC +S+ARKVRYLQIEGFD NSSP MQMTWRQLTDECGNA+ DGF ETV YDG  I   DRLQ+DMYICAPWGN ELE+VSKSTNG   MEKI+WEVEYGPDEYHIWDTLNTP +++ LDYAPIPSG G EETF +PL+         +EGYYSVMYSGPFPPL+C++ LHP+ + YEGCY AGIFGT  G TG+ ND  PAENYRM+DGI D GV AD KVMTL+KCA  C A+G  YFGLESAVKCLCGD LVG+PT D YGDGGSVCGI ITFGGDVPEYKYLCSGDSRVL
Sbjct:   10 AFLASVPAVDG--VKAIFDLRTGDDYESDNNCADSEARKVRYLQIEGFDYNSSPWMQMTWRQLTDECGNAVTDGFSETVTYDGDSIEDGDRLQMDMYICAPWGNYELELVSKSTNGGNAMEKIAWEVEYGPDEYHIWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEG--------SEGYYSVMYSGPFPPLECSN-LHPSGITYEGCYSAGIFGTADGPTGSANDADPAENYRMFDGIDDDGVNAD-KVMTLEKCAATCTAQGTQYFGLESAVKCLCGDELVGSPTDDVYGDGGSVCGIDITFGGDVPEYKYLCSGDSRVL 321
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 2.700e-137
Identity = 195/264 (73.86%), Postives = 215/264 (81.44%), Query Frame = 2 
Query:  272 RQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNN-LDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGND--PAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            RQLTDECGNA+ DGF ETV YDG  I   DRLQ+DMYICAPWGN ELE+VSKSTNG   MEKI+WEVEYGPDEYHIWDTLNTP +++ LDYAPIPSG G EETF +PL+         +EGYYSVMYSGPFPPL+C++ LHP+ + YEGCY AGIFGT  G TG+ ND  PAENYRM+DGI D GV AD KVMTL+KCA  C A+G  YFGLESAVKCLCGD LVG+PT D YGDGGSVCGI ITFGGDVPEYKYLCSGDSRVL
Sbjct:    8 RQLTDECGNAVTDGFSETVTYDGDSIEDGDRLQMDMYICAPWGNYELELVSKSTNGGNAMEKIAWEVEYGPDEYHIWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEG--------SEGYYSVMYSGPFPPLECSN-LHPSGITYEGCYSAGIFGTADGPTGSANDADPAENYRMFDGIDDDGVNAD-KVMTLEKCAATCTAQGTQYFGLESAVKCLCGDELVGSPTDDVYGDGGSVCGIDITFGGDVPEYKYLCSGDSRVL 261
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.040e-125
Identity = 201/346 (58.09%), Postives = 244/346 (70.52%), Query Frame = 2 
Query:   56 MRPSSAIKLLIA---AFLASPPAVDGATVKFEHDLRTGDDVGSDNNCVNSQARKVRYLQIEGFDENSSP*MQMTWRQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNN----LDYAPIPS--GDGNEE--TFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGND--PAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            MR S+A+KL+ A   A LAS PA   A  K   DLRTG+D  SD NC +S+ +K RYLQIE FD N +P +++TWRQLTDECGNAI+DGF     Y  G      + Q+DMY+CAPWG+ ELE+VSKSTNG  PME+I++EVEYGP++YHIWD+LNTP ++      DYAPIP+   DG EE  TF WPL+         AEGYYSVMYSGPFPPL+C + L P DVAY GCY AG+FG   G  G+ ND  PAENYR++DGI D GV AD KVMTL+KCA  C  +G +YFGLESAVKCLCGD L G+P  D  G+  SVCG+  T   ++PEYK+LCSG+S VL
Sbjct:    1 MRASTAMKLVSAGCTALLASMPA-PAAAEKHIFDLRTGNDYESDANCEDSETKKTRYLQIEIFDYNKTPWLEITWRQLTDECGNAISDGFEGKAHYKDGDRQDTSKFQIDMYVCAPWGHYELEVVSKSTNGGNPMERIAFEVEYGPEQYHIWDSLNTPFFDEDDPPSDYAPIPTKYNDGIEEGDTFTWPLEG--------AEGYYSVMYSGPFPPLECPN-LFPEDVAYVGCYPAGMFGEAEGPEGSANDEDPAENYRLFDGIDDEGVAAD-KVMTLEKCAAICTEQGTAYFGLESAVKCLCGDELDGSPYDDVRGE--SVCGVDYTDDVNIPEYKFLCSGESTVL 333
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.680e-98
Identity = 161/297 (54.21%), Postives = 198/297 (66.67%), Query Frame = 2 
Query:  194 SQARKVRYLQIEGFDENSSP*MQMTWRQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNN----LDYAPIPS--GDGNEE--TFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTG--NGNDPAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            S+ +K RYLQIE FD N +P +++TWRQLTDECGNAI+DGF     Y  G      + Q+DMY+CAPWG+ ELE+VSKSTN   PME+I++EVEYGP++YHIWD+LNTP ++      DYAPIP+   DG +E  TF WPL+         AEGYYSVMYSGPFPPL+C + L+PA VAY GCY AG+FG   G  G  NG DPAENYR++DGI D GV AD KVMTL+                     CLCGD L G+P  D  G+  SVCG+  T   ++PEYK+LCSG+S VL
Sbjct:   19 SETKKTRYLQIEIFDYNKTPWLEITWRQLTDECGNAISDGFEGKAHYKDGDRQDTSKFQIDMYVCAPWGHYELEVVSKSTNDGNPMERIAFEVEYGPEQYHIWDSLNTPFFDEDNPPSDYAPIPTKFNDGIDEGDTFTWPLEG--------AEGYYSVMYSGPFPPLECPN-LYPAGVAYVGCYPAGMFGEAEGPEGSANGEDPAENYRLFDGIDDEGVAAD-KVMTLE---------------------CLCGDELDGSPYDDVRGE--SVCGVDYTDDVNIPEYKFLCSGESTVL 282
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5JNN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.150e-82
Identity = 142/236 (60.17%), Postives = 155/236 (65.68%), Query Frame = 2 
Query:  449 MEKISWEVEYGPDEYHIWDTLNTPLY-NNLDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTT--GNGNDPAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVK--------------------------------CLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRV 1051
            MEKI+WEVEY PDEYHIWDTLNTP + ++LDYAPIPSG G EETF +PL+         +EGYYSVMYSGPFPPLQCADELH ADV Y GCY AGIF T  G+T   N  D AE YR +DG  D G  A+ KVMTL+ CA  C A+G  Y GLESAVK                                CLCGD LVG+P  D YG GGSVCGI ITFGGDVPEYKYLCSGDSRV
Sbjct:    1 MEKIAWEVEYVPDEYHIWDTLNTPFFEDSLDYAPIPSGSGEEETFTFPLEG--------SEGYYSVMYSGPFPPLQCADELHLADVTYVGCYSAGIFCTADGSTRSSNSKDSAEKYRPFDGTDDDGEDAN-KVMTLENCAATCTAQGTQYLGLESAVKTTYVVYVGYLLVSSALSHAIDSLRRHTPPLLQCLCGDELVGSPIDDVYGIGGSVCGIDITFGGDVPEYKYLCSGDSRV 227
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5JYR3_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR3_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.020e-71
Identity = 149/338 (44.08%), Postives = 161/338 (47.63%), Query Frame = 2 
Query:   56 MRPSSAIKLLIAA---FLASPPAVDGATVKFEHDLRTGDDVGSDNNCVNSQARKVRYLQIEGFDENSSP*MQMTWRQLTDECGNAINDGFIETVKYDGGPINANDRLQVDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNNLDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGND--PAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            MRPSS + LL AA   FLAS PAVDG  VK   DLRTG+D  SDNNCV+S+ARKVRYLQIEGFD NSSP MQMTW                                                                                                                                          LHP+ + YEGCY AGIFGT  G TG+ ND  PAENYRM+DGI D GV AD KVMTL+KCA  C A+G  YFGLESAVKCLCGD L G+PT D YG+GGSVCGI ITFGGDVPEYKYLCSGDSRVL
Sbjct:    1 MRPSSTMTLLAAASGAFLASIPAVDG--VKAIFDLRTGEDYESDNNCVDSEARKVRYLQIEGFDYNSSPWMQMTW----------------------------------------------------------------------------------------------------------------------------------------SNLHPSGITYEGCYSAGIFGTADGPTGSANDADPAENYRMFDGIDDDGVNAD-KVMTLEKCAATCTAQGTRYFGLESAVKCLCGDELAGSPTDDVYGEGGSVCGIDITFGGDVPEYKYLCSGDSRVL 199
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BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: A0A6H5JIW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW9_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 4.620e-57
Identity = 111/228 (48.68%), Postives = 123/228 (53.95%), Query Frame = 2 
Query:  371 VDMYICAPWGN*ELEIVSKSTNGDAPMEKISWEVEYGPDEYHIWDTLNTPLYNNLDYAPIPSGDGNEETFIWPLKDYDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTTGTTGNGNDPAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGLESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            +DMYICAPWGN ELE+V KST G   MEKI+WEVEYGPDE                                              G YSVMYSGPFPPL+C++ LHP+ + YE  Y  GIFGT  G TG+ N  AENY M+DGI D GV AD KV TL+KCA  C A G  YFG E AVK          P        G    I ITFGGD P+YK LCSGDSRVL
Sbjct:    1 MDMYICAPWGNYELELVFKSTKGGNAMEKIAWEVEYGPDE----------------------------------------------GNYSVMYSGPFPPLECSN-LHPSGITYERWYSVGIFGTADGPTGSANYHAENYHMFDGIDDDGVNAD-KVTTLEKCAATCTARGTQYFGREFAVK----------PYRQRLRRRGLRVRIDITFGGDAPDYKCLCSGDSRVL 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.950e-19
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  914 CLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSRVL 1054
            CLCGD+LVG+PT D YGDGGSVCGI ITFGGDVPEYKYLCSGDSRVL
Sbjct:   50 CLCGDDLVGSPTDDVYGDGGSVCGIDITFGGDVPEYKYLCSGDSRVL 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13254.2622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K6V8_9PHAE3.260e-17174.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K566_9PHAE8.840e-16974.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K384_9PHAE2.700e-13773.86WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMV1_ECTSI1.040e-12558.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ76_9PHAE3.680e-9854.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN6_9PHAE1.150e-8260.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYR3_9PHAE1.020e-7144.08WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIW9_9PHAE4.620e-5748.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F7_ECTSI3.950e-1989.36WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13254contigEcto-sp13_S_contig13254:2..3765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1054
Hectar predicted targeting categoryother localisation
Exons8
Cds size606
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13254.2622.1prot_Ecto-sp13_S_contig13254.2622.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13254 2..2255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.011455-CDS-Ecto-sp13_S_contig13254:1..1421681462709.011455-CDS-Ecto-sp13_S_contig13254:1..142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13254 2..142 -
1681462709.0238698-CDS-Ecto-sp13_S_contig13254:564..6271681462709.0238698-CDS-Ecto-sp13_S_contig13254:564..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13254 565..627 -
1681462709.032025-CDS-Ecto-sp13_S_contig13254:1369..14611681462709.032025-CDS-Ecto-sp13_S_contig13254:1369..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13254 1370..1461 -
1681462709.0401254-CDS-Ecto-sp13_S_contig13254:1781..20491681462709.0401254-CDS-Ecto-sp13_S_contig13254:1781..2049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13254 1782..2049 -
1681462709.04816-CDS-Ecto-sp13_S_contig13254:2213..22551681462709.04816-CDS-Ecto-sp13_S_contig13254:2213..2255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13254 2214..2255 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.0562177-UTR-Ecto-sp13_S_contig13254:2255..23401681462709.0562177-UTR-Ecto-sp13_S_contig13254:2255..2340Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13254 2256..2340 -
1681462709.0641818-UTR-Ecto-sp13_S_contig13254:2630..27201681462709.0641818-UTR-Ecto-sp13_S_contig13254:2630..2720Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13254 2631..2720 -
1681462709.0721412-UTR-Ecto-sp13_S_contig13254:3302..33871681462709.0721412-UTR-Ecto-sp13_S_contig13254:3302..3387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13254 3303..3387 -
1681462709.08016-UTR-Ecto-sp13_S_contig13254:3577..37651681462709.08016-UTR-Ecto-sp13_S_contig13254:3577..3765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13254 3578..3765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13254.2622.1

>prot_Ecto-sp13_S_contig13254.2622.1 ID=prot_Ecto-sp13_S_contig13254.2622.1|Name=mRNA_Ecto-sp13_S_contig13254.2622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MEKISWEVEYGPDEYHIWDTLNTPLYNNLDYAPIPSGDGNEETFIWPLKD
YDGVQGNDAEGYYSVMYSGPFPPLQCADELHPADVAYEGCYDAGIFGTTT
GTTGNGNDPAENYRMYDGIGDMGVQADDKVMTLDKCADKCKAEGASYFGL
ESAVKCLCGDNLVGNPTTDSYGDGGSVCGIGITFGGDVPEYKYLCSGDSR
VL
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mRNA from alignment at Ecto-sp13_S_contig13254:2..3765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13254.2622.1 ID=mRNA_Ecto-sp13_S_contig13254.2622.1|Name=mRNA_Ecto-sp13_S_contig13254.2622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13254:2..3765- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTACGGAGACAAGCACGCAGGACCTCAATATCGACTCAGCAGCACCG
CCAGGATGAGACCCTCATCTGCCATTAAGCTTCTTATTGCGGCCTTCCTG
GCGAGCCCACCGGCGGTCGATGGTGCGACTGTGAAGTTCGAACACGATTT
GCGGACCGGGGATGATGTCGGTAGCGACAACAACTGCGGTGAGGCGTACG
GTTCGGAAGGCACAGATTGTTCTGGAGTATATATCCTCCGTACCAATACT
TGTGCTCTCCTGTTTTCGCACGACCCGCCGTAGAGGACTCAGGAGCCCCT
CTACCGTTGCTCTTCCCCTCACGGACTTCAGCGTGAATGTCGTGTCCTGT
GTTGTCGTTCCCCTTTGTTCATCGATAGTTAACTCCCAGGCTAGGAAGGT
GCGCTATCTGCAGATCGAGGGATTCGACGAGAACTCGTCACCCTAGATGC
AGATGACATGGAGGTACGTTTCAGTAGTTTGCGGCCCATTCTCTGACGCT
TGGTCGCAATGCCGGTGGTGAAGAGTCACAACGACTATTATCCTTCCACG
ACCGGTGCATAGATTGGCAGCCAGACATGTCGCGGAATGCTGTCGGATCA
GCGAAGTGCGGAGTGCCATCAATAAAACCCAAGGTATGTAGATTACCCTC
GACTTTTACGATGAAACAAACAGCCCTCGACTGCAGCAACAGACTCTCAT
TCTTGTTGTTCTGTATTTTTTATCGAACGCATCCGAATGATGATAAACAA
AATCGCGTTACCCTAAAAAAAACATTTCTTGGTGCGCGCCTAAGGCCAAA
CAAGTTAGACATGAACATCAACCACAGGCATTAGCTCAACGCGAGCACCG
GATAAGCTCTGCGCTTTCGTCACGATTCGCGAGCCCGCCTCTTACCTTGA
TGTGATCATCGCTTAGCTTGGAGTTGTTGTTTCCGTGTCTTGCTTCACGA
AGGCGAGCCAAGCGACAATATTGATTTCATGATGTTTATGGCAAATCTCG
GTCGTCGTGCGTGTGCCCCCTTCCCCCCCCTCCTCAATTCATCAGGCAAC
TGACCGATGAATGCGGAAATGCCATCAACGACGGTTTCATCGAAACCGTA
AAGTACGATGGCGGTCCCATCAACGCGAACGACCGGTATGCTCGTGTTTC
TTTCGCGAACCCCGCATACTTCCTGACAACATGTATTCAACATGCGTGCA
AGCCCGAATCCATGCCGGCATGATCCCTTACATGTCTATGTATCTCAATA
ACCGTTTCGAAAATAAATCCGTTCTGATGTTCGGTTGCACTCGGACGTGC
AATGTGGCGATGCAGTACCAGGTGTTTACAGTTGTCGAGCTTGTACCGTC
CCACACCGGCATTACTGCCAGCGTTCCTCGCGTAACCTCATATTCTCCTA
CCGTTTGCGTTTGTTTTTGTCGCAGGCTGCAAGTGGACATGTACATCTGC
GCCCCCTGGGGTAACTAGGAGCTGGAAATTGTCTCCAAGAGCACCAACGG
TGACGCTCCAATGGAGAAGATCTCCTGGGAGGTAGAGTATGGCCCCGACG
AGGTGAGCGGGGTGTGCAGCTTCATCCCTCCTGCTTGCGCGATCGCACGT
GTCATAGTTTCCCTCTACCACTGTATATCCACGCCTCCTTTCTCGACGGC
CCTCCTCCCCTATCCACAACACTTACACCCCTCCTGTTCTCACGATATCT
CCCAAATGCGTGGCAGTACCACATCTGGGACACCCTGAACACTCCCTTGT
ACAACAACCTGGACTACGCCCCAATACCCTCCGGTGACGGAAACGAGGAA
ACATTTATCTGGCCTCTCAAGGACTACGACGGTGTCCAGGGTAATGACGC
GGAGGGATACTACTCGGTCATGTACTCGGGACCCTTCCCACCGCTACAAT
GCGCGGACGAACTGCACCCTGCCGACGTGGCGTACGAAGGATGCTACGAC
GCCGGGATTTTCGGCACCACCACCGGAACCACAGGTACCTGCCATTTGCT
TTGGTTTCGTCGTCGCTGTGTTGTTGTGCGGTTGTAGACATTATATTTAC
CATGGTTTGTTGGCAGTAACGACCCTGCCGTGAACTGCATCTTCGTGTGC
GGTGGGTGTAGAGCAGCATGGCTTGAAGTAAAGAAACACCACATCTGGCC
GAGCGAAATGCACCAAGTTGTCGTTGTCCCGGTCAGCTACGTCCGCCGAC
ACAAGGATTTTAATCCCAACCCACCCCCTTCCGAGAGGACGCTCTCATTT
CTCGGAAACCGAAACTCTGCTATTTTGTCGTTGCTGAACTTCTGAACGCG
ATAGGCAATGGCAACGACCCGGCCGAGAACTACCGCATGTACGATGGCAT
CGGCGACATGGGGGTCCAGGCGGATGACAAGGTCATGACGCTCGATGTGA
GTGCATACGGATCCATCGACCAAACCATTTTCGACAAACGCATCGGGGCC
GGCACTGAAAGTTGGATGTTGGCCCAAGTTGAACCGACCATACTGGACTT
GTGGCTGGAAAAGTCCGCTACTATATGGATTGGGGGGTGACGCAAAATTA
TATCCGGGCAAGAGGGGAGGACCGTCTCGCTAATGCTGCTTCATGTCCTA
GTGCCATGTGTATCCCACAGAAATGTCGTCTGCTATTTAAAACCCCGGAC
ATCGCGCGCCGGTCTGTTCTCGGCTAGGCAGTCGCTGGCGCCATGGAATG
GCAAGGTTACCCGCTGTCGTCAGCGTTGATTTCGCATGGCTTGTTGTGAA
TGCGAGGCAGGGCGCAGTCCTAGTTCCGATCTCGAAGACTCGAGTTGGGT
TTGCTTTCCAATACACCGCGGTATTTGGTCTCCACGACAAGAGCCTTGTC
GACACGCGTCCGTACATCCAGCGATATGTCTTGCCCTTCACATGCATCGG
CGAATGTGTGTTCAACAGCTCGTCATCTAAGTTTCGGCTTGTGTTTTCCG
TTGACGTTTCCATCGTGTTGAGAAGAAGTACGAACGCTCTGAACATCCGC
TGAAAGCCGAAAGCTGCTTGAGTAGTGAAGACTTGACCTTGGATTTCTCG
GCCTGAGCAGGAATGAACATTATCGTTTCGCGGTGATTCAATCGCATTGA
GCACACAAATCGTCTCTCCTTGCTGTGATCTTTCCCAGAAATGTGCCGAC
AAGTGCAAAGCTGAAGGAGCCTCTTATTTCGGTCTCGAATCCGCGGTCAA
GGTAAGAGGGGCTCAAAACCGTTGCTCGCACTGTTGTGGGTGTTGCAGCC
CATGGTTGGATAGTATACCATGAAACAAAATAGGTGCCAGTGGAGGATGT
GCAAGTCAGGCGGTTTCGTAGAGAAGCACGGGGAGGTGTTCAGTTGGGAA
ATCTGTGTGTGCCCGTTTCGCAAAACACTGCTATGTGTACGGTAGCCAGC
ATGTTTTGGCCCCCCGCCCCGGTGAATTTTTTGGACATGAACAGTGCGTG
AACTGCCCAATGGCTCGTCTCGTCGGTGCAGGGAAGCTAATGAGGACCCT
AGATCCCTTTAGGGGCGTATTTAGACCACCTCTCCATGTGGGGCATGTTC
CGCCCTGACCAGCCCCCTTGATCCGCAACGACCACGCATCCCAACGACCC
CCGTCCCCCTCCCTCTTCTCCAGTGCCTTTGCGGGGATAACCTGGTCGGG
AACCCTACCACCGACAGCTACGGCGACGGAGGCTCTGTGTGCGGTATCGG
CATCACGTTCGGCGGCGACGTCCCCGAGTACAAGTATCTGTGCTCCGGCG
ACTCCCGCGTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13254:2..3765-

>mRNA_Ecto-sp13_S_contig13254.2622.1 ID=mRNA_Ecto-sp13_S_contig13254.2622.1|Name=mRNA_Ecto-sp13_S_contig13254.2622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13254:2..3765- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGATCTCCTGGGAGGTAGAGTATGGCCCCGACGAGTACCACAT
CTGGGACACCCTGAACACTCCCTTGTACAACAACCTGGACTACGCCCCAA
TACCCTCCGGTGACGGAAACGAGGAAACATTTATCTGGCCTCTCAAGGAC
TACGACGGTGTCCAGGGTAATGACGCGGAGGGATACTACTCGGTCATGTA
CTCGGGACCCTTCCCACCGCTACAATGCGCGGACGAACTGCACCCTGCCG
ACGTGGCGTACGAAGGATGCTACGACGCCGGGATTTTCGGCACCACCACC
GGAACCACAGGCAATGGCAACGACCCGGCCGAGAACTACCGCATGTACGA
TGGCATCGGCGACATGGGGGTCCAGGCGGATGACAAGGTCATGACGCTCG
ATAAATGTGCCGACAAGTGCAAAGCTGAAGGAGCCTCTTATTTCGGTCTC
GAATCCGCGGTCAAGTGCCTTTGCGGGGATAACCTGGTCGGGAACCCTAC
CACCGACAGCTACGGCGACGGAGGCTCTGTGTGCGGTATCGGCATCACGT
TCGGCGGCGACGTCCCCGAGTACAAGTATCTGTGCTCCGGCGACTCCCGC
GTGCTG
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