mRNA_Ecto-sp13_S_contig13252.2621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI) HSP 1 Score: 201 bits (511), Expect = 8.690e-59 Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
EAQMDYKTFLDLVLAMDNK+TRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIA ALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML
Sbjct: 626 EAQMDYKTFLDLVLAMDNKRTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIAHALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 728
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.030e-58 Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLT STIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVV+ML
Sbjct: 612 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTNSTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVTML 714
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: F0YHQ0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHQ0_AURAN) HSP 1 Score: 118 bits (295), Expect = 7.750e-30 Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
E +MD+KT+LDLVLA +N T QA+ YFWR+LDV+ +G + + TI+ FFR+IA ++ + G++ P T DV DEIFDMVKP DPT IT DL S HTV+SML
Sbjct: 227 EGEMDFKTYLDLVLAFENLATPQALAYFWRLLDVKKQGSIDVFTINYFFREIADSIRDEGYDAPITADVVDEIFDMVKPKDPTKITYDDLRDSKQAHTVISML 329
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A7S4UU37_9DINO (Calmodulin n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UU37_9DINO) HSP 1 Score: 110 bits (275), Expect = 2.410e-28 Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
E +MDYKTFLD VLAM+NK T+QA+QYFW+++D+ +GRL TI+ FFR I L F+ + DDVKDEIFDMV+ P FIT DL+ G TV+S+L
Sbjct: 64 ENEMDYKTFLDFVLAMENKNTKQAIQYFWKLIDIHHQGRLDGFTINYFFRSILALLRRKKFDVASVDDVKDEIFDMVQAKQPGFITSQDLVNCRQGGTVLSIL 166
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A075A2H0_9TREM (Uncharacterized protein n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A075A2H0_9TREM) HSP 1 Score: 114 bits (284), Expect = 3.470e-28 Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
E +MDYK++LD VLAM++K QA+ Y +R+LDV G+GRLT TI F+ + L G+ PT +D+ +EIFDMVKPADP +ITL DLL SG G TVVS+L
Sbjct: 234 EREMDYKSYLDFVLAMEDKYEPQALAYLFRILDVGGRGRLTPLTIKYFYDSLEERLRSSGYTPPTFNDILNEIFDMVKPADPNYITLDDLLRSGKGDTVVSVL 336
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A1S3JY28_LINUN (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JY28_LINUN) HSP 1 Score: 115 bits (287), Expect = 3.770e-28 Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
+ +MDYKT+LD VLA++N++ QA+QY +R+LDVQGKG L + +++ FFR I ++ G E + DVKDEIFDMVKPADP ITL DL+ SG G TVVS+L
Sbjct: 319 DGEMDYKTYLDFVLALENRKEPQALQYLFRILDVQGKGELIVFSLNYFFRAIQEQMKLHGQEPVSFHDVKDEIFDMVKPADPLKITLQDLINSGQGDTVVSIL 421
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A6P5VPS3_DROOB (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=2 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VPS3_DROOB) HSP 1 Score: 114 bits (286), Expect = 4.820e-28 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
E QMDYKTFLD VLAMDN+++ QA+QY +R+LDV +G LT+ T+H FF+ I ++ + +D+ +EIFDMVKP DP ITL DL+ SG G TVVS+L
Sbjct: 317 EVQMDYKTFLDFVLAMDNRKSPQALQYLFRILDVDHRGYLTVPTLHFFFKGIQEKMKSQNEDPVNFEDINNEIFDMVKPKDPCKITLQDLIKSGQGETVVSIL 419
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A2L2YPI1_PARTP (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YPI1_PARTP) HSP 1 Score: 108 bits (269), Expect = 4.930e-28 Identity = 53/103 (51.46%), Postives = 74/103 (71.84%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
+ +MDYKT+LD VLA++N++ QA+QYF+R+LD++ K L++ + FFR I + G E +DVKDEIFDM+KPADP +TL DL+ SG G TVVS+L
Sbjct: 16 DREMDYKTYLDFVLALENRKEPQALQYFFRLLDIEQKNYLSVFDFNYFFRAIQEQMRAHGQEPVLFEDVKDEIFDMIKPADPLKVTLQDLILSGQGDTVVSIL 118
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: A0A0G4I8Q7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I8Q7_9ALVE) HSP 1 Score: 115 bits (287), Expect = 5.030e-28 Identity = 59/103 (57.28%), Postives = 70/103 (67.96%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
E +MDYK+FLD VLAM+NK+ + AM YFWR+LD+ KG L TI+ FFR + L FE +DVKDEIFDM+KP P I L DLL S GHTVVSML
Sbjct: 345 EGEMDYKSFLDFVLAMENKKEKAAMLYFWRILDIHRKGGLDTFTINYFFRSVVDTLRRRQFEPVNVEDVKDEIFDMIKPKLPMCIQLEDLLNSQQGHTVVSML 447
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Match: S4RDJ9_PETMA (Protein phosphatase 2, regulatory subunit B'', gamma n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RDJ9_PETMA) HSP 1 Score: 109 bits (273), Expect = 6.710e-28 Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 3
Query: 3 EAQMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSML 311
+ +MDYKT+LD VLA++N++ A+QYF+++LDVQ KG L + +++ FFR I + G E + DVKDE+FDMVKP DP ITLADL++S G TVVS+L
Sbjct: 75 DGEMDYKTYLDFVLALENRKEPAALQYFFKLLDVQSKGYLNVFSLNYFFRAIQDQMRAHGQEPVSFQDVKDEVFDMVKPQDPLHITLADLISSNQGDTVVSIL 177 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13252.2621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13252.2621.1 >prot_Ecto-sp13_S_contig13252.2621.1 ID=prot_Ecto-sp13_S_contig13252.2621.1|Name=mRNA_Ecto-sp13_S_contig13252.2621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp MDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIAback to top mRNA from alignment at Ecto-sp13_S_contig13252:1361..2749- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13252.2621.1 ID=mRNA_Ecto-sp13_S_contig13252.2621.1|Name=mRNA_Ecto-sp13_S_contig13252.2621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13252:1361..2749- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13252:1361..2749- >mRNA_Ecto-sp13_S_contig13252.2621.1 ID=mRNA_Ecto-sp13_S_contig13252.2621.1|Name=mRNA_Ecto-sp13_S_contig13252.2621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13252:1361..2749- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |