mRNA_Ecto-sp13_S_contig13245.2615.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13245.2615.1
Unique NamemRNA_Ecto-sp13_S_contig13245.2615.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: D7FSI9_ECTSI (Villin villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 6.600e-164
Identity = 252/261 (96.55%), Postives = 256/261 (98.08%), Query Frame = 2
Query:  434 MVLDHGDVSGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADFAK 1216
            MVLDHGDVSGRTV+TV EGSEPEAFWDALGGMGEYPK SEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLC DDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEA+MEAK+AEAPGTITMDDLPAPPANGAXXXXXXXX TASRDITPPSA MTVPYAELKGYGTEVDGVDPSCREQYLDD+EFVEVFGMSKADFAK
Sbjct:  500 MVLDHGDVSGRTVSTVEEGSEPEAFWDALGGMGEYPKLSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCVDDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAQMEAKYAEAPGTITMDDLPAPPANGAXXXXXXXXXTASRDITPPSANMTVPYAELKGYGTEVDGVDPSCREQYLDDKEFVEVFGMSKADFAK 760          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A6H5JVG7_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG7_9PHAE)

HSP 1 Score: 477 bits (1228), Expect = 7.200e-163
Identity = 253/279 (90.68%), Postives = 257/279 (92.11%), Query Frame = 2
Query:  434 MVLDHGDVSGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSE------------------SMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADFAK 1216
            MVLDHG VSGRTV+TV EGSEPEAFWDALGGMGEYPK SEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSE                  SMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAK+AEAPGTIT+DDLPAPPANGAXXXXXXXXSTASRDITPPSA MTVPYAELKGYGTEVDGVDPSCREQYLDD+EFVEVFGMSKADFAK
Sbjct:  247 MVLDHGGVSGRTVSTVEEGSEPEAFWDALGGMGEYPKLSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSEVCTSTRPQPGHTPYSAEQSMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKYAEAPGTITLDDLPAPPANGAXXXXXXXXSTASRDITPPSAGMTVPYAELKGYGTEVDGVDPSCREQYLDDKEFVEVFGMSKADFAK 525          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A835YLA3_9STRA (Villin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA3_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.280e-55
Identity = 98/179 (54.75%), Postives = 126/179 (70.39%), Query Frame = 2
Query:  458 SGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDL 994
            S R   TV EG EP AFW+ALGG GEY +++EAE   Q PRLFQ+SNATG + V+ V NFDQSDLC DDVMLLDT + VFVW+G  +N TE++ ++++A+ Y+++A+DGR   TP+ +VA G+EP LFTQHFRGWD  L     FVDPY+AKL A +E +A          G ITMD +
Sbjct:  534 SKRETVTVAEGDEPAAFWEALGGQGEYAEAAEAEPSPQPPRLFQISNATGTMRVSEVANFDQSDLCVDDVMLLDTFTQVFVWIGTSSNPTEQNAAVDIAKAYVDSATDGRPSGTPIARVACGSEPALFTQHFRGWDAGLLSSQAFVDPYEAKLQALREADAAAXXXXXXXEGAITMDSI 712          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A835YKP2_9STRA (Villin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.730e-52
Identity = 91/160 (56.88%), Postives = 120/160 (75.00%), Query Frame = 2
Query:  437 VLDHGDVSGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKL 916
            +L +   SGR    + EG E   FWDALGG G Y +++E+EEV+Q PR+FQ+SNATG + V  V NFDQSDLC DDVMLLD ++ V+VWVG  +N  E+ E+M++A+ YI TA+DGRS DTP+++V AG+EPP+FTQHFRGWD  L  K  FVDP++AK+
Sbjct:  588 LLTYKGASGRDFVAIQEGEETPEFWDALGGEGPYLEAAESEEVAQAPRMFQISNATGAMTVEEVPNFDQSDLCNDDVMLLDCLNEVYVWVGGGSNAQEQREAMDIAKAYIETATDGRSRDTPIVRVTAGSEPPMFTQHFRGWDADLMSKRNFVDPFEAKV 747          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A7S2D1R4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1R4_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.760e-51
Identity = 110/247 (44.53%), Postives = 147/247 (59.51%), Query Frame = 2
Query:  464 RTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKA 1204
            R + TV EG EP+AFW+ALGG GEYPK +  E V  +PRLFQ SNA G   V  VC+FDQ DL  DDV LLD  ++++ W+G  AN  ER  +++ AQ+Y   A+DGR PD P+++V    EP +FTQ F GWD  +  KN FVDPY+AKLAA +   A      AEA      +D PAP  +          + A     P S + ++  AEL+  GT  +GVDP+ +E+YL D +F+E F +  A
Sbjct:  286 RELVTVAEGEEPDAFWEALGGKGEYPKQAPGEPVPSDPRLFQCSNAFGSFVVEEVCSFDQEDLLEDDVYLLDVGTTLYAWIGGGANADERRLAIDTAQKYNAAATDGRDPDIPIIEVIQNREPLMFTQFFAGWDGEMWTKNVFVDPYEAKLAAQRAAAA------AEA-----GEDAPAPMLSQKSMSSAQLLNPAG-GFKPTSEKFSL--AELQA-GTP-EGVDPTKKEEYLSDADFLEAFKVDMA 516          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A7S2RPG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPG3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.100e-50
Identity = 111/251 (44.22%), Postives = 140/251 (55.78%), Query Frame = 2
Query:  464 RTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADFAK 1216
            R   +V EGSE E FW  LGG  EY +         EPRLF  +NA G   V  V NF Q D+  DDVM+LD  ++V+ W+G   N  E+S++M  AQ+Y  TA DGR PD P+++V AG+EP LFTQ F GWDP   +KN FVDPY+AKLAA + E+A         P  +     PA P   A        ST+++           PYA+L       DGVDP+ +EQYLDD EF   FGMS A+F K
Sbjct:  587 REFVSVAEGSEDEEFWGYLGGKCEYAQQPPDMPAPSEPRLFHCTNAYGSFQVEEVVNFTQEDMLDDDVMILDVGTTVYNWIGSGCNAEEKSKAMETAQEYNRTAQDGRDPDIPIVEVKAGSEPLLFTQFFPGWDPAFAEKNKFVDPYEAKLAAMRAEKAAAGGAEEPMPEPVK----PAAPGAPALNPSGGFSSTSTK----------FPYADLSSGCP--DGVDPTKKEQYLDDGEFQAKFGMSLAEFDK 821          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A5D6XQ13_9STRA (HP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ13_9STRA)

HSP 1 Score: 187 bits (474), Expect = 8.530e-49
Identity = 107/251 (42.63%), Postives = 144/251 (57.37%), Query Frame = 2
Query:  464 RTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTA-SDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADFA 1213
            R V  V EGSE +AFWD LGG G Y K+    EV   PRLF  SNA G      + +F Q DL  DDV LLDT +S+++W+G  ANE E+ E++ +A +Y++ A SDGR   TPV+ V   NEPP+FT +F  WDP    +N FVDPY+A+L   KEE+ K   K  +A GT++ +   +PPA  A        +    +        T  Y +L      VDG+D   +E+YL D EF+EV G +KA+FA
Sbjct:  571 RAVEVVAEGSESDAFWDFLGGKGPYAKTKGEVEVPHPPRLFHCSNAYGYFHAEEIFSFAQDDLNVDDVFLLDTYTSLYIWIGDGANEAEKREAVQLADEYLSLAKSDGREDGTPVISVHCRNEPPMFTSNFLAWDPAFFAQNEFVDPYEARLKKLKEEKEKNRPK--DAVGTVSSEAFRSPPAAAAAPPAPVKAAGGKGE--------TFSYEQLVAG---VDGIDIVNKERYLSDAEFLEVMGSTKAEFA 808          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A8K1CGN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGN4_PYTOL)

HSP 1 Score: 179 bits (453), Expect = 6.570e-46
Identity = 104/252 (41.27%), Postives = 145/252 (57.54%), Query Frame = 2
Query:  464 RTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTA-SDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADFAK 1216
            R+  TV EGSE   FWD LGG   YPK     E   +PRLF  SN+ G      + +F Q DL  DDV LLDT +S+++W+G  ANE+E+ E++ +A +Y++ A SDGR   TPV+ V  GNEPP+FT +F  WD    +++ FVDPY+A+L   K E+ K + K  +A GTIT + +    A            TA   I   SA+ T  Y +L      V+G+D + RE YL D EF ++FG +K +F+K
Sbjct:  582 RSSVTVAEGSESGEFWDFLGGKANYPKEKTGFECPHQPRLFHCSNSYGYFNAEEIFDFAQDDLNVDDVFLLDTYTSLYIWIGTGANESEKREALKLADEYLSVAKSDGRGDGTPVITVHCGNEPPMFTSNFLAWDKAFFEQSEFVDPYEARLRKLKAEKEKNQPK--DAVGTITSESIGVTAA-----------PTAPAPIAAGSAK-TFTYEQLLAG---VEGIDLTSREVYLSDAEFEKLFGATKDEFSK 816          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A7S3M9U8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9U8_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.870e-45
Identity = 110/256 (42.97%), Postives = 144/256 (56.25%), Query Frame = 2
Query:  461 GRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAXXXXXXXXSTASRDITPPSARMTVPYA------ELKGYGTEVDGVDPSCREQYLDDEEFVEVFGMSKADF 1210
            GR V T+ EGSEP  FW+ALGG  +YP S+E E V ++ RLF  S ATG   V  V NFDQSDL  +DV LLDT + +FVWVG Q+ + E+ +S+  A QY+ +A DGR  D P+++V AG EP +F+ HF+GWD     K  F DPYQA+L A    + +  A   E   T +      PPA  A   XXXXX          SA    P        +LK  G    GVDP+ +E+YLD+  F  +F + +A F
Sbjct:  250 GREVVTLQEGSEPAEFWEALGGQADYPSSAEGEVVPRDARLFAASTATGTFRVEEVDNFDQSDLNDEDVYLLDTYTQLFVWVGSQSTQQEKEQSLAFAAQYVASADDGRDADIPIIRVTAGEEPRMFSAHFQGWDAEYFTKRAFKDPYQARLEALAATKKQTAAPAVELKKTNSF----KPPAAAAPAPXXXXXXXXXXXXXX-SAVYAAPVPGSFSLDDLKN-GLPA-GVDPTQKEEYLDNATFTSLFNVDRAAF 498          
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Match: A0A5A8E3V1_CAFRO (HP domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8E3V1_CAFRO)

HSP 1 Score: 175 bits (443), Expect = 2.030e-44
Identity = 85/167 (50.90%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  455 VSGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETERSESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDKNTFVDPYQAKLAAAKEEEAKMEAK 955
            ++G  VT V EGSE E FW+ALGG  +YP+S       Q PRLFQVS  TG L V  VCNF Q DL  DDVM+LDT + +FVW+GP ANETER+ +  +A++Y+  A   R P+ P++++AAG+E P+FT +F+GW+       TF DPYQAKL   +EEE    AK
Sbjct:  570 MTGSEVTVVEEGSEEEEFWEALGGKDDYPESLPGPPPPQPPRLFQVSTETGSLRVDEVCNFCQDDLLEDDVMMLDTFNQIFVWIGPGANETERTRAKAIAKEYLEAAGPSRDPEIPIIEMAAGSETPMFTSNFQGWETAKA--KTFPDPYQAKLERIREEEEARRAK 734          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13245.2615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI9_ECTSI6.600e-16496.55Villin villin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JVG7_9PHAE7.200e-16390.68HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835YLA3_9STRA2.280e-5554.75Villin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YKP2_9STRA1.730e-5256.88Villin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2D1R4_9STRA1.760e-5144.53Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RPG3_9STRA1.100e-5044.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6XQ13_9STRA8.530e-4942.63HP domain-containing protein n=1 Tax=Pythium brass... [more]
A0A8K1CGN4_PYTOL6.570e-4641.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3M9U8_9STRA1.870e-4542.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8E3V1_CAFRO2.030e-4450.90HP domain-containing protein n=4 Tax=Sar TaxID=269... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13245contigEcto-sp13_S_contig13245:3..4782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score494.2
Seed ortholog evalue3.7e-137
Seed eggNOG ortholog2880.D7FSI9
Model size810
KEGG koko:K05761
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
Ec32 ortholog descriptionVillin villin
Ec32 orthologEc-11_003870.3
Cds size783
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13245.2615.1prot_Ecto-sp13_S_contig13245.2615.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13245 436..4782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462708.3058927-UTR-Ecto-sp13_S_contig13245:2..291681462708.3058927-UTR-Ecto-sp13_S_contig13245:2..29Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13245 3..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462708.31961-CDS-Ecto-sp13_S_contig13245:435..5911681462708.31961-CDS-Ecto-sp13_S_contig13245:435..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13245 436..591 +
1681462708.3394692-CDS-Ecto-sp13_S_contig13245:1331..14811681462708.3394692-CDS-Ecto-sp13_S_contig13245:1331..1481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13245 1332..1481 +
1681462708.3513076-CDS-Ecto-sp13_S_contig13245:2276..24741681462708.3513076-CDS-Ecto-sp13_S_contig13245:2276..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13245 2277..2474 +
1681462708.3636951-CDS-Ecto-sp13_S_contig13245:3616..37891681462708.3636951-CDS-Ecto-sp13_S_contig13245:3616..3789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13245 3617..3789 +
1681462708.3746753-CDS-Ecto-sp13_S_contig13245:4676..47821681462708.3746753-CDS-Ecto-sp13_S_contig13245:4676..4782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13245 4677..4782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13245.2615.1

>prot_Ecto-sp13_S_contig13245.2615.1 ID=prot_Ecto-sp13_S_contig13245.2615.1|Name=mRNA_Ecto-sp13_S_contig13245.2615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MVLDHGDVSGRTVTTVGEGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRL
FQVSNATGKLAVTPVCNFDQSDLCADDVMLLDTVSSVFVWVGPQANETER
SESMNVAQQYINTASDGRSPDTPVLQVAAGNEPPLFTQHFRGWDPLLTDK
NTFVDPYQAKLAAAKEEEAKMEAKHAEAPGTITMDDLPAPPANGAAASGG
GGGSTASRDITPPSARMTVPYAELKGYGTEVDGVDPSCREQYLDDEEFVE
VFGMSKADFAK
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mRNA from alignment at Ecto-sp13_S_contig13245:3..4782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13245.2615.1 ID=mRNA_Ecto-sp13_S_contig13245.2615.1|Name=mRNA_Ecto-sp13_S_contig13245.2615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13245:3..4782+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACACGCCGCGGAAGAAATCTCGAAGGTATTCTTTTGAAATTTCCGCAA CAACAGCGGATACGTCATTTAGCAATTGGTTTTAGGCGCCCGAGTCGGTT GGACCAGTACAGGTATTTTTTGAGTAGAGACACGAACGATATAAATGTGT AGACAACAACAACTTGCGTTTTGGGGGGGCAACGACTAGGGAATCCTAGC GGAGGAAAGTCGACGACAGACGTGGTAGACTAATGGCTGAGGAAACGCTG CATATTGTGCAAGAGAGAGACAGTTCCACGTGGATAAGTACACATCACCG GATCCTTAACCGGGACACATGAACGGCGATACAAACGCCGATGATGGACG CTGCCGTTCATCGAAATCATTACGTCCACCACCGTGTCCTTCATTCGTGG CCGAACGTTCGTTCGATGCCAAACTGCTTGTAGATGGTGCTTGACCACGG AGATGTATCTGGCCGGACGGTGACTACCGTGGGAGAGGGATCGGAGCCGG AAGCGTTCTGGGACGCCCTTGGAGGCATGGGCGAGTACCCCAAGTCGTCA GAGGCTGAGGAAGTCTCACAGGAACCACGTCTGTTCCAGGTGTGTGTGTG TCCGTTTGAATTAGCATCGACCGCGCTAACCGGCTGGCCAATGGTGCGGT CAACCGTTCGCGGTTGTAAGATGACCTAGCCTTGGTCATTGGCTACGGGC AGAGAGTGTCCTTATTAAACTAGCCTAACCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCACCCCGCCCGCCCCCCCCCTGCCTCGCCCCCCAAACAA CACCCCCCACACACCCCAAAACACACGGGCGNNNNNNNNNNCGGTGGTAA CATCACCTCGCCTGGCTCATTGGCTACGGGCAAAAAGTTGCTTTATTAAA CTACCCCCCCCCCCCCCCCCCCCCTTTGTCTACTCGCGCGGCCGTTGCCA TTGCGATGGGGCCCCACGTACAATGCCCAATCCTGATACGATACGATAGG CGGTTACTCTCTTTTCGGGAAGACCGTATCCGTTTCTAGGTATTTCCCCT CGTCTTGTCCCTGCCCACCTCCGTTGTTGCAACAAACGAATCACCGTCTT GGGGCCACGCGAAGAAAACGTCTCTTGTCATCAGTTTCCTTCCCGGCTGT GAAAACGGTTTGGACGCGTTCGTCGCTCTGGCTGTGATACGTGTACCGTT CTCATGCTATCAAACGTGCCGTCGTGCTATGGCACGTTTACCGGATTAAT ACCGTTTCATGATGTGACACGTGCCGTTTCATTCTGTGATACGAACCGTT TCAATTCGTCACCATGGCTTTTTCAACAGGTCTCGAACGCCACCGGCAAG CTGGCGGTAACACCCGTGTGCAACTTCGACCAGAGCGACCTGTGCGCCGA TGACGTCATGCTCCTCGACACCGTGTCCTCCGTGTTCGTATGGGTCGGCC CACAGGCCAACGAGACAGAGCGATCAGAGGTGTGGTATCCACCGTATCCT TACGTTGCGGTGTAGAATTGTGTTTTACGATATGGTTCTGTACGATACGG TACTGTACGGTACGAATTTGTCTGTGTTCGTGTTCGTGTGGGTCGGACCG CAGGCCAACGAAACAGAGCCATCAGAGGTGTGGTATCTACCGTATCCTAC GCCACGGTATGAAATGGTGTTTTTGTTGTTTGGCATCTGCGGTGTGTTGC ATTTTGTTGCAAGCCGTTCGGTCGCCAAGGCTAGTTTTCCGGCCCGAAGA AGGCGATCGTCCGCTGTGAGAGATGTTGCGATGAATTGGGCTCGTCGGCC CGCTAGTGTCTCAATAGCCACGAACAGCCCGTGGCCGATTTGTCTCCCTC CCATGTCCCCGAGCAGTCTCAGTTGTGCTCGTCCTTTGCCAAGTGTTCAA TGCAAGAACAGCGGTATTCCAGCAACACGGCACTTAGCTGGTTCCCCATA AACTGGTATCTGTCAGTCGCCTGTTCGTATTGGCAAATAAAAAGCCAGGA TCCGCATGATTGGCATGAGCCCTTCATTTGACTAGCACTCCTCCGCGTTA TAGGTACTAAACCCCCCTCGCCGCGCATTTCGCGAACCCCCTTCTTCCTC CCCCTGTGTCCGGCGTGTGACATAATAACCGGTCCATGAGCGTAGCCCAG TAGTACATCAACACGGCCGTAGCCCGGACACACCGGTGGCTCCCCCGCCC GCGACTCATTTTCGCGAATCGTCCCTCCAACTTACCCCCCCCCCCCTCCC CCCCTCCCGTTTCCGGCCGAGCAGTCCATGAACGTAGCTCAGCAGTACAT CAACACCGCATCGGACGGCCGCAGCCCGGACACGCCCGTGCTCCAGGTGG CGGCAGGCAACGAGCCCCCCCTCTTCACGCAGCACTTCCGCGGGTGGGAC CCGCTGCTCACGGATAAGAACACCTTCGTCGACCCTTACCAGGCCAAGCT GGCGGCCGCCAAGGAGGAGGAGGTGAGTTTTTTTTTCTAGTACGTGAATT AATTTGGAAGGTTGTTGCGGGTCCACTTTTTTTTTTTCGTTCTTGAAAAG GTTTTCCCCTCTTTAGGTAGTTGGCTTGTCGTGACCACGGAAAGCGATTG CGTCGTTTGGACCAGTGCGGATGCTGGGAGGTGCCGGGTAGAGGTCGGAA CGGTTTCCAATGTCAAGACAACAGCACGAGATGGTGGTCCCTCGGCGGGG TCGTGTGTGTGCCTTTTTAGAGTGGTAGGGGCTTGCTGGTGTGTTGTCGC ACCCCTCGCCCCGGTGGGATTGGCCATCGTTGATCGGTCCCGTGGGAACA ATGCTCCGTCCTCTCGAGAGGACGCGTGGTCAATGACCTATCCGCTTAGG CATGCCAAACATGCTTTCGTTACCCCCACCCCCCCCCTCTTCGTGCACTG TGTGTTTTTTTTAGTTGTGNNNNNNNNNNCTGACCTATCCGCTTAGGCAT GCCAACCAGGCGTTCGTTACCCCCCCCCCCCCCCCTCTTCGTGCACTGTG TGTTTTTTTTTGTTGTGTGCGGGTAGGCGTTTACGGGATCGTTCCTGTGT ATATTGTGCGTGTATATTAGGCCGTCTGCTTGGGACCCAGGGGAAATAGT TCGCTCTATGTTTTGTGGTGATAATGCCGTCGGGGTAACCTCCTCCTTTC CTTGGGCGAAGTCGTTATTTTGGCGTTTTGAGGGTTGTGGTATTCTTCAT AGACGCCGTCCTTCTAAAAAGGTCGCCTAACCCCCTCCCCGTGCCCTGCC CCTCTGACAGTCCTTTGTTTTTTGTGCCGTCTGTCCTGAATGCTCATCTC GTCTTGTGCGCAGATGGCGCTCTCGTGTGTCGCGTCTTGTCTTGTGCGCA CACATGTGCGAGCGTTAAAAAGTAAGCCCTTCCAACCTATTCGTTCGAAC TATCTCTTTGGCCGTTTGTTCTCTGTTCAGCACAGCAGCAATCTCTCTAC AGTACAGCAGTAGCAAGGCGTCGTCCTAACAATCTACAAGGCTAGGTTTG TCTCTTTGTGTCTGTCTGACTGTCTTCCTTTCTGCCTGTCTGTCTGTCGG CCTCTGTCTTTCTCCTTGTATGCTTCGCTTGCTTGTGCTTCATTTTTCAA TCTTCCTTGTACAGGCGAAGATGGAGGCCAAGCATGCCGAGGCTCCTGGC ACGATCACCATGGACGACCTGCCCGCACCACCCGCCAACGGGGCGGCGGC AAGCGGCGGCGGCGGCGGCAGCACCGCATCCCGGGATATCACCCCGCCCT CCGCGAGAATGACTGTCCCCTACGCTGAACTCAAGGGGTGAGTAGAAGAG AAAGGGGCGGGATGCTGTCGTGTGACGCGCAGTGATTGTAGCGTTAGAAA ATGGCGGTCCCCTACGCAAGGGGTGAGAAGTGAATGGGGCGGAATGGTGC ACAACGCTGCTAGTGTTGGAGAGAACGGCAGTCTCCTGCGCTAAACTCAA CGGACGAGAAGAATAGAAAGCAATGGGGGTAGTGTCAAGTATGACGCTGC TAGTGTTAAGAGAATGACGGATCCCTTGTGCTGAGTTGAAGGGGTGAGAA AAGAGAAAAGTAAGCGGGATGATGTCAATTAATAACCTGCTCGTGTTCAG AGACACCTCGATAATTCGGGCGCTAGTCGTGCGTTGGTGCCCTGGAGGTG TAGGCAACGTGGGGTGGAAGGAGGTACTGTAGGATAGGCGATACAACTCG TGTCGTGTTTTGCTTGCCCTCTTGGCGTGAGGCGCACCGTGGGGGCGCAG ACCACGCACTGCAGTTGAGACGGATCGCAAAGAAAAGGGGTTGTGTACAG TAGGGGCGTAGGGTGGCGAGCTCGAATTCGGGTCCCGGTATTGCCGTGCG TGGGAACGATATAATCTCGCAGGTGGTCTGTTCATGCGCATTATGTCCCC TTAGCTCCACTGGCTGTAACCGTTTGTTGTCTGTATAGAATTTTGCCCTC TACACGTTCATGGCCATGAAATGTTATTGTTGAGCCCTCCCCCTCTCCCC ACACGCACAATTCTATATCCGGCTGACCCACAACTGCTGTGAAACGGAAG TGGAAGCTGCCAGCTGTTGGATGTCTTGCGAAGCCTGAAAGTGCGCGTGG TACTAATCCACCGCTAACATGTTCATTTTCTGTGTGCCCCCCCCGTTCCC CTTCCCGGCCGAATTGGCGCACAGGTATGGCACGGAGGTGGACGGGGTGG ACCCGTCATGTAGAGAGCAGTACCTCGACGACGAGGAATTCGTGGAGGTA TTCGGCATGTCCAAGGCTGATTTCGCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13245:3..4782+

>mRNA_Ecto-sp13_S_contig13245.2615.1 ID=mRNA_Ecto-sp13_S_contig13245.2615.1|Name=mRNA_Ecto-sp13_S_contig13245.2615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13245:3..4782+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTTGACCACGGAGATGTATCTGGCCGGACGGTGACTACCGTGGG
AGAGGGATCGGAGCCGGAAGCGTTCTGGGACGCCCTTGGAGGCATGGGCG
AGTACCCCAAGTCGTCAGAGGCTGAGGAAGTCTCACAGGAACCACGTCTG
TTCCAGGTCTCGAACGCCACCGGCAAGCTGGCGGTAACACCCGTGTGCAA
CTTCGACCAGAGCGACCTGTGCGCCGATGACGTCATGCTCCTCGACACCG
TGTCCTCCGTGTTCGTATGGGTCGGCCCACAGGCCAACGAGACAGAGCGA
TCAGAGTCCATGAACGTAGCTCAGCAGTACATCAACACCGCATCGGACGG
CCGCAGCCCGGACACGCCCGTGCTCCAGGTGGCGGCAGGCAACGAGCCCC
CCCTCTTCACGCAGCACTTCCGCGGGTGGGACCCGCTGCTCACGGATAAG
AACACCTTCGTCGACCCTTACCAGGCCAAGCTGGCGGCCGCCAAGGAGGA
GGAGGCGAAGATGGAGGCCAAGCATGCCGAGGCTCCTGGCACGATCACCA
TGGACGACCTGCCCGCACCACCCGCCAACGGGGCGGCGGCAAGCGGCGGC
GGCGGCGGCAGCACCGCATCCCGGGATATCACCCCGCCCTCCGCGAGAAT
GACTGTCCCCTACGCTGAACTCAAGGGGTATGGCACGGAGGTGGACGGGG
TGGACCCGTCATGTAGAGAGCAGTACCTCGACGACGAGGAATTCGTGGAG
GTATTCGGCATGTCCAAGGCTGATTTCGCGAAG
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