mRNA_Ecto-sp13_S_contig13244.2614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13244.2614.1
Unique NamemRNA_Ecto-sp13_S_contig13244.2614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: D8LBA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA7_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 3.520e-190
Identity = 337/356 (94.66%), Postives = 339/356 (95.22%), Query Frame = 1
Query:  241 PAAKPCLLLDLEKKPLLKVFVFLNAGEVLRAAQVCRPMFRKVDLMFGIGSQAVSAEPTPPAPXXXXXXXXXIVTGGGAPAGARDRAGSAXXXXXXSTGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXXXGMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLGR 1308
            PA KPCLLLDLEKKPLLKVFVFLNAGEVLRAAQVCRPMFRKVDLMFGIGSQAVSAEPTPPA  XXX     I+TGGGAPAGARDRAGSA      STGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXX  MSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELE+QKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLV EVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLGR
Sbjct:  151 PAVKPCLLLDLEKKPLLKVFVFLNAGEVLRAAQVCRPMFRKVDLMFGIGSQAVSAEPTPPAAPXXXSAAAGIITGGGAPAGARDRAGSAASASSASTGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXX--MSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELEDQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVTEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLGR 504          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A6H5KPJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ1_9PHAE)

HSP 1 Score: 462 bits (1190), Expect = 2.310e-156
Identity = 284/315 (90.16%), Postives = 285/315 (90.48%), Query Frame = 1
Query:  364 VDLMFGIGSQAVSAEPTPPAPXXXXXXXXXIVTGGGAPAGARDRAGSAXXXXXXSTGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXXXGMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLGR 1308
            VDLMFGIGSQAVSAEPTPPA  XXX     I+TGGGAPAGARDRAGSA      STGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATL            XXXXXXX MSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFL XXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKAS QKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLV EVKKLRTTNLALKAECDDLRQQLKDLR SVSQLGR
Sbjct:  245 VDLMFGIGSQAVSAEPTPPAAPXXXSAAAGIITGGGAPAGARDRAGSAASASSASTGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLTGAGDGGSGPVGXXXXXXX-MSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLXXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASAQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVTEVKKLRTTNLALKAECDDLRQQLKDLRISVSQLGR 558          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A7S1YZD9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZD9_TRICV)

HSP 1 Score: 125 bits (314), Expect = 2.420e-27
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 1
Query:  721 GMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLGR 1308
            G++  +   ++ +LT  E+  II +  R R+ E + G L++ ++DL ++LQG  SVK+FL+   +D E   K   DE     RQ ASDQEVI+FLDSR QE+ER  ++T +K    + E    +A G ++T+VL DML+FEK++    E  +KAQKK+LV EVK  R   +AL+AE D   +Q   L+ ++  + R
Sbjct:  468 GLNAAMASSMASKLTAQELSVIISMQNRLRQREGQLGQLRSARDDLASQLQGVGSVKDFLIGKVRDVEKLHKEGQDEIAKITRQVASDQEVIAFLDSRVQELERSLRKTEEKCAGAEEEYRRLRAQGSQKTQVLSDMLQFEKEQLAESEREWKAQKKVLVKEVKSCRAQIVALQAERDGYYEQNSKLKEALLGMNR 663          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A7S4I957_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I957_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.170e-26
Identity = 79/191 (41.36%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  721 GMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSV 1293
            G++  +   ++ +LT  E+  II +  + R  +     L+AEK+DL ARL G ESVKEFLV   KD+E   K   DE G   RQ ASDQEVI+FLD + QE+ER  +   ++    + EL   K  G ++ +VL DML+FEK++    E  +KAQKK+LV EVK  R   +AL+AE D   +Q   L+ ++
Sbjct:  559 GLNAAMASSMASKLTAAELSVIISMQTKLRHKDGELTKLRAEKDDLAARLTGVESVKEFLVTKVKDSEKLHKDGRDELGKIARQVASDQEVIAFLDGKVQELERSLKVAENERAKAEEELSRLKNQGSQKVRVLSDMLQFEKEQLAESEREWKAQKKVLVKEVKSCRAQIVALQAERDGFYEQNGKLKDAL 749          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A1E7FXV1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXV1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.040e-26
Identity = 105/353 (29.75%), Postives = 173/353 (49.01%), Query Frame = 1
Query:  262 LLDLEKKPLLKVFVFLNAGEVLRAAQVCRPMFRKVDLMFGIGSQAVSAEPTPPAPXXXXXXXXXIVTGGGAPAGARDRAGSAXXXXXXSTGAPGNRLGQRALASAL----GVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXXXGMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQE-TMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLG 1305
            L+ L+ +PL+++F FL+A ++L  AQ+   M+ KVD +FGI     S     P P          +    A AG      +A      +T +    +G + L S L     V  + V +       G    +   AT                     ++ ++   ++ +L+  E+  II +T++  ++E     L+ +KE   A+L GTE+VK+FL+   +D E  L RS +++    +Q ASDQEVI+FLD R QE+E+  +  T++K  T Q   +  K S  K+  +L DML++E+++    E  +KA KK+LV EVK  R   LAL+AE D  ++Q   L+ ++   G
Sbjct:  291 LMTLDIEPLIEIFGFLDAMDILNTAQINITMYNKVDNIFGISEDGQSPPAPTPNPVPTTNNNTTDIAPTSAAAGVTSTPPTAAELTAKATVSSAGVMG-KGLFSMLQPKPAVTETSVSSTIPAKRYGDAKSSSTNATSSASSGQQQQP----------LNAKVAQSMASKLSDAELAAIISMTDKLSKLEKEVHMLRNDKEVFAAKLDGTEAVKQFLIGKVRDVEVKLSRSREDEIKVTQQIASDQEVIAFLDGRVQEVEQQTENLTIEKTGT-QANFDGLKISTSKKITMLSDMLKYEREKVREDEGEWKATKKVLVKEVKSCRAQILALQAERDGFKEQNDMLKRAIVSTG 631          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A448ZNW3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNW3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.070e-26
Identity = 128/350 (36.57%), Postives = 184/350 (52.57%), Query Frame = 1
Query:  262 LLDLEKKPLLKVFVFLNAGEVLRAAQVCRPMFRKVDLMFGIGSQAVSAE-PTPPAPXXXXXXXXXIVTGGGAPAGARDRAGSAXXXXXXSTGAPGNRLGQRALASALGVVASRVEAVTAGASSGFGSLAGAAATLXXXXXXXXXXXXXXXXXXXGMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQE-TMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQLG 1305
            LL LE +PL+ +F FL+A ++L  AQ+   M+ KVD +FGI     S   PTP  PXXXXXXXXX V        A   A   XXXXXX            + ASA            AG   G  S+   A                 X     ++ ++   ++ +L+  E+  II +T +  ++E    AL+ EK  L A+L+GTE VK+FL+   +D E  L+RS +++    +Q ASDQEVI+FLD R QE+E+  +  TM+K  T Q  L++ K S  K+  +L DML++E+++    E+ +KA KK+LV EVK  R   LAL+AE D L +Q   L+ +V   G
Sbjct:  292 LLTLEMEPLMMIFGFLDAMDILNTAQINVTMYTKVDNIFGISEDGQSPPVPTPSKPXXXXXXXXXAV--------AETPAMKXXXXXXXXXXXXXXXXXXXSPASA------------AGKGRGLFSMMQPAKA--------------EXKQSQPLNAKVAQSMASKLSDAELAAIITMTNKLSKLEKEGRALRNEKAVLLAKLEGTEGVKQFLIGKVRDVEVKLQRSKEDEIKVTQQIASDQEVIAFLDGRVQELEQQTESLTMEKTGT-QAGLDDLKVSTSKKITMLSDMLKYEREKVREDESDWKATKKVLVKEVKSCRAQILALQAERDGLLEQNDMLKRAVVSTG 606          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A7R9WTV3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WTV3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.020e-25
Identity = 70/191 (36.65%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  724 MSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVS 1296
            ++  +   ++ +L+  E+  II +TE+  +ME +   +  EKE+L ARL GTE+VK+FL+   +D E+ L+++ + +    +Q +SDQEVI+FLD R QE+E     T++     + EL + KAS   +  VL DML++E+++    E+ +KA KK+LV EVK  R   +AL+AE D  R+Q + L+ +++
Sbjct:   41 LNASVAQSMASKLSDTELAAIISMTEKLSKMERQLITITNEKEELQARLSGTEAVKQFLIGKVRDAESKLQKNQENEIKVTQQISSDQEVIAFLDGRVQELEGTMLTTVEDKSATEAELSSLKASSSNKITVLTDMLKYEREKLREQESEWKATKKVLVKEVKSCRAQIVALQAERDGYREQNELLKHAIT 231          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A024UFA2_9STRA (F-box domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFA2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.040e-23
Identity = 75/187 (40.11%), Postives = 110/187 (58.82%), Query Frame = 1
Query:  742 DDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQL 1302
            DD+ K     EMK    L  R + +E    ALQAEKEDL ARLQG E+V++FL+    D E AL  ++++K L   QS  D+EV+++LD+++Q+ + V Q  + +    + ELE+ +     +++VLEDM+R      EA E   K QKK+LV E++ LR  N  L  EC   R QLK L+ S++ L
Sbjct:  258 DDMIKSFNAKEMKFFHDLMIRMKTLEKHLTALQAEKEDLAARLQGAENVRDFLMEKLTDVEDALALAIEDKALADAQSNLDREVMAYLDAKSQDADEVLQLYVTQNQEAKYELEHLRQQHDAKSQVLEDMMRCLTAEKEAVERQAKGQKKVLVKEIRTLRAENSKLHLECSGYRAQLKQLKESLAHL 444          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A485KIV6_9STRA (Aste57867_7877 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIV6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.640e-23
Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  742 DDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLRTSVSQL 1302
            D++ K     EMK   +L  R + +EA   + QAEKEDL ARLQG E+V++FL+    D E  L  +++EK  +  QSA D+EV+++LD +T+E+E   Q    +    Q ELE  +   + + +V+EDM+R         E   KAQKK+LV EV+ LRT N  L  E +  R QLK LR S+ QL
Sbjct:  215 DEMIKSFNAKEMKFFHELMIRMKSLEANLVSTQAEKEDLAARLQGAENVRDFLMEKLTDVEDTLTITMEEKANSEAQSALDREVMAYLDGKTEELEFALQSCASQNEVLQIELERFQRQHEAKAQVIEDMIRHVTLEKREIELQAKAQKKVLVKEVRTLRTENTRLAMESNSYRAQLKQLRESLLQL 401          
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Match: A0A7S2BXQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXQ0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.940e-22
Identity = 72/188 (38.30%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  721 GMSPELMDDLSKRLTTVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVXXXKDTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMTYQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKKLRTTNLALKAECDDLRQQLKDLR 1284
            G++  L   ++ +L + EMKGIIQ+TER +++E  + +L   KED  +RLQ TESVKEFLV   +DTE ALKR++D    T RQ                         +      +  L + + + +KQ K LEDML +EK+R    EA  K+QKKLLV EVK LR     +  E D  +QQ + L+
Sbjct:   10 GLTAALATQIASKLNSTEMKGIIQMTERIKKLEGYSHSLNEAKEDTESRLQATESVKEFLVGKLRDTEMALKRTIDSANETARQHXXXXXXXXXXXXXXXXXXXXXXXALSSRDNAEQSLSSAEEATKKQIKTLEDMLHWEKERSGKQEAEAKSQKKLLVKEVKALRIQLSQMTTERDAYKQQARSLQ 197          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13244.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA7_ECTSI3.520e-19094.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPJ1_9PHAE2.310e-15690.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YZD9_TRICV2.420e-2739.80Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4I957_9STRA4.170e-2641.36Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FXV1_9STRA6.040e-2629.75Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZNW3_9STRA7.070e-2636.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9WTV3_9STRA1.020e-2536.65Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A024UFA2_9STRA1.040e-2340.11F-box domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A485KIV6_9STRA1.640e-2340.64Aste57867_7877 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2BXQ0_9STRA1.940e-2238.30Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13244contigEcto-sp13_S_contig13244:128..3936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score550.8
Seed ortholog evalue5.6e-154
Seed eggNOG ortholog2880.D8LBA7
Model size1311
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29P3R@1,2RWF4@2759
Ec32 ortholog descriptionChromosome segregation protein SMC
Ec32 orthologEc-27_004610.1
Cds size1296
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13244.2614.1prot_Ecto-sp13_S_contig13244.2614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13244 143..3936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462708.2143612-UTR-Ecto-sp13_S_contig13244:127..1421681462708.2143612-UTR-Ecto-sp13_S_contig13244:127..142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13244 128..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462708.2246509-CDS-Ecto-sp13_S_contig13244:142..4901681462708.2246509-CDS-Ecto-sp13_S_contig13244:142..490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 143..490 +
1681462708.2336648-CDS-Ecto-sp13_S_contig13244:1012..12071681462708.2336648-CDS-Ecto-sp13_S_contig13244:1012..1207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 1013..1207 +
1681462708.2436593-CDS-Ecto-sp13_S_contig13244:1568..18831681462708.2436593-CDS-Ecto-sp13_S_contig13244:1568..1883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 1569..1883 +
1681462708.253983-CDS-Ecto-sp13_S_contig13244:2517..26641681462708.253983-CDS-Ecto-sp13_S_contig13244:2517..2664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 2518..2664 +
1681462708.2698274-CDS-Ecto-sp13_S_contig13244:2952..30421681462708.2698274-CDS-Ecto-sp13_S_contig13244:2952..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 2953..3042 +
1681462708.2782583-CDS-Ecto-sp13_S_contig13244:3735..39361681462708.2782583-CDS-Ecto-sp13_S_contig13244:3735..3936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13244 3736..3936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13244.2614.1

>prot_Ecto-sp13_S_contig13244.2614.1 ID=prot_Ecto-sp13_S_contig13244.2614.1|Name=mRNA_Ecto-sp13_S_contig13244.2614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp
MQSAHEAAVLAAAAAAAAGIPGSGGGSGTSAEQPGSPDSIGSLGTARQLH
GSEALPAGEGGGEQATSPPPLPPPVPAAKPCLLLDLEKKPLLKVFVFLNA
GEVLRAAQVCRPMFRKVDLMFGIGSQAVSAEPTPPAPPPAPSAAAGIVTG
GGAPAGARDRAGSAASASSASTGAPGNRLGQRALASALGVVASRVEAVTA
GASSGFGSLAGAAATLTGAGDGGSGPGGGGGSGSGGMSPELMDDLSKRLT
TVEMKGIIQLTERGRRMEARAGALQAEKEDLFARLQGTESVKEFLVAKLK
DTEAALKRSLDEKGLTLRQSASDQEVISFLDSRTQEMERVAQETMDKAMT
YQTELENQKASGQKQTKVLEDMLRFEKQRGEAGEAAFKAQKKLLVAEVKK
LRTTNLALKAECDDLRQQLKDLRTSVSQLGR*
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mRNA from alignment at Ecto-sp13_S_contig13244:128..3936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13244.2614.1 ID=mRNA_Ecto-sp13_S_contig13244.2614.1|Name=mRNA_Ecto-sp13_S_contig13244.2614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3809bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13244:128..3936+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAACTCATCAAGATGCAATCTGCACACGAAGCAGCGGTGTTAGCGGC GGCAGCGGCGGCGGCGGCGGGCATTCCTGGTAGCGGTGGCGGCAGCGGCA CCAGCGCCGAGCAGCCGGGCTCGCCCGACTCGATAGGCAGCTTGGGAACT GCAAGGCAGCTCCACGGGTCAGAGGCTTTGCCGGCGGGAGAGGGGGGCGG CGAGCAGGCAACTTCGCCACCACCGCTGCCGCCACCGGTGCCGGCCGCGA AGCCTTGTCTGCTGTTGGACCTCGAGAAGAAGCCTCTGCTGAAGGTGTTC GTCTTTCTTAACGCCGGGGAGGTGCTCCGCGCGGCGCAGGTCTGCCGGCC CATGTTCCGCAAGGTGGGTCAGGAGGGTGGGGTACCACCCAGCCGTAGTC GTTAGGCTGTTGACCTCGCATCCCTACGATGCTGGGACGGAGCGATTTGC GGCGGCTCAGGCTACGTTTCACAAGAAAAAACCAGAAGCTGGTCATCATG CTTGCGGTCGGGAGGGGAGGGGGGGGCGAGGGGGTGATTCTGAGGAGCAC CCGGGAGGAATACCCCGCTTAAATGGAGGAGGATATGGTTCTCGCGGTGG AGGCAGCGTGTGTAATGATTTTTTGTGATTCTTCAAGGCGCTTGTCGTGG AAATGCGCGTGGGCTTTGCGAGGGGGATTTGGCCGTCGAACACCGTCGTA GGAAACGCCTTGCGCCCAGAATTTTGTCTGAAGTACGGTTCATTCTTCGA CGCGATACATATAGCTCACGGCCACGTCACTCCCTCAGGACCTCAATCTT TGCACGCTTCCATCTTCTCACGAGCTGCGTACTGAATGCCCTTCTTTTTC GCACTATTTACTCAACACTCGCGTTCTTTTGTCAGGTGGACCTAATGTTC GGCATCGGCAGTCAGGCGGTGAGTGCCGAGCCGACCCCTCCTGCACCCCC TCCTGCCCCGTCTGCCGCTGCGGGCATTGTCACCGGGGGCGGTGCCCCAG CCGGCGCAAGAGATCGAGCGGGATCAGCCGCGTCGGCGTCGTCGGCGTCG ACCGGGGCACCGGGGAATCGGCTCGGACAGGTACGTAGGGAGATGTTTGC TATTTGAAAAGCCTACAAGGGCTTTGGGACGGACTTTGATCAGCCGCCAC AAAATGATGCGGCCGCCTTGTGCTTTTCTTTTCTGTGAAAAGTGGTGGTA CAGAGCCGGGTGACGCGCCGGGCTGGTGTGGGTCGGGGATTCGGACGTGG AGGAAAAACGACGGTGAGCAGCGGAGGAAGGGTCACGTACATTTGTCGAA GATCGTTGTCTGGGACCCCGTCCGGTCATGTGTTTTTTTTTTTTTTACGA ATTATGTGTGCACCAGTCGTCACGTTGAGGTTGTACCACTGTCGACGTCA CCAGACCCCCACCCCCCCGCTCCCCGCTCTTGCGTACACAGAGAGCACTA GCCAGTGCTCTCGGGGTAGTGGCTAGCAGGGTGGAGGCCGTCACCGCGGG AGCGAGCAGCGGCTTCGGCTCCTTAGCGGGAGCGGCGGCGACCTTAACCG GGGCCGGCGATGGCGGCTCGGGGCCGGGCGGCGGTGGCGGCAGCGGCAGT GGCGGGATGTCGCCGGAGCTGATGGACGACCTGTCGAAGCGGCTGACGAC GGTCGAGATGAAGGGGATCATCCAGCTCACGGAGCGAGGGAGAAGGATGG AGGCGAGGGCGGGAGCCTTACAGGCTGAGAAGGAGGACCTCTTCGCCAGG CTTCAGGTGAACCGAAAATGTTGACGCGATTCCGATTTTGATTTGTTTCG ATGATTGGTTGGTTTTGAGTGTCACCCGCTATCCGATGTATTCTACTGTT TGTCGATTGGGTGGTGGAGTGTGACCACACGACGGCACCCCCGTCCATTG TCTTGAGGGCTGCCGCCCCTCGCTTCAAGGCGGAAGAAGCTGTCGAACAG ATCTGGCAGTCTTGCATCGCCGTAAGATGGTCGTGGGGTAGTGAAGTGCA TGCTGGGGTCCAGTTTCTATCGGTGCCGAAGCGGAGGAGTGCACGCGGCC TTCGGCGGTAGGAAAAAGAGCGGCAAGTAACGCCGAAAGTAGAAATGAGC GAGGTTGTTCTTGGGGTCTGCTTGATCCCCAAGCTGGTGATAGATACCAA AGGCCGTGGCTGTCTCGATCGATCAATTTTCTCCCCTACGCGTGTTCTTG TTATTCTTGTTTGTGGTTGTTCCTGGCTTGACATCTGTCACGAAAAAATC AATGCTGGCGTTGTCCCGGCGGGGCTCGGCTGCTTCGCGGGGCACCCAGT CGATTATTCGGCTGTTCGTGCCCGACAAAGATTCGGTGGTATGATACCTT AGCCTTGTCGTTGTTGTGCCCGCGTGGGTTGGCTTGGCAGGGCACGGAGA GCGTGAAGGAGTTCCTGGTGGCCAAGCTCAAGGACACGGAGGCCGCCCTT AAGCGCAGCCTCGACGAGAAGGGCCTGACGCTGAGGCAGTCGGCGTCCGA CCAAGAGGTCATCTCCTTCTTGGACTCCAGAACACAGGTTACTGCTGCTT GCTGTTAGATTTCTGTGTGTTGTTGAGTGTTCTCCTCGGGGATGCGCTTG TGCGCGTCCTGATACCCGCCGCCGTCTGTGCATACGAGTTACCGTGGATA TTGCTCGTCTGTGGCTCATTTCTAGTGCTCATATCTCGTGCTCGTTTGTC CATGCCCGTGTGCTCGTGATTCTCTAATCGTCTCTTCTCGTCCCTCTTGT GATTCCGGTCTATGCTTATTCCATCGCTCTCGGGTCGACACGGCGTGCGT TCGTTTGCTGCTGTGTTGTGAGTAGGAAATGGAAAGGGTGGCGCAGGAGA CGATGGATAAGGCCATGACCTACCAGACCGAGCTTGAGAACCAGAAGGCC AGCGGCCAGAAGCAGGTGCGGCCACCAACAAACCCCAAAGTAGGGAAGGG TTCGTTATGTTCACTTGTCTATTCAATTCGGCGCGTGTGTGTCCCTTAAG GTTCTTTCCTTCTCTGCGTGTGAACGAAAGAGTGTATGTTAGATATAGTA GTGGCGGTCCTGACCATGACAACCCGCCTCTAGCCGAGGGAGGTTTGGCT GGAACGGGGAGACAGGGAGTGTTAGGGAGACAGGGAGTGGGTGATCAAGC CCTTCGTTGTATTGTGTTTTTGTAATGGTTGAAAGGACCTAACCACGCAG GCAGCAGTGGTCATGTGAAGAAACAAGTCCGGAGTATTGTGCTGGTGGTG AAATGAGTTCGTGCTCTCCCGTGTCGCACCGACCCTCCCTGTGCCGGAGC TACTATAAGCAAGCATCATCCACACTTGGTACACACACGTCCAAACCTGG AAAACGACCTAACGTGCCTTGTTTTGATTCGCGCTGTTCAGTGACGCGTA GTACATCTTGGGCACTGCTCGTTCGATAACCGCGTTTCGAAGTCCTTTTT CCTCTTTCGGAAGGGATTAACTTGACACATCTCTTGCGCTTTCTGGTGTT CGCCGTCTGCCCCCGCCACGAAAATCGGCGCCAACCCGACCCCGGGATCG GGCCTTGAACCATGGGACTGTCGACGTCATGGCTGGGTGTTGGCGGAACA ACCAATAGACCAAGGTCCTGGAGGACATGCTAAGGTTCGAGAAGCAGCGG GGGGAGGCCGGCGAGGCCGCCTTCAAGGCCCAGAAGAAGCTTTTGGTGGC CGAGGTGAAGAAGCTGAGGACGACCAACCTGGCGCTCAAGGCCGAGTGCG ACGACCTGCGGCAGCAGCTCAAGGACCTCCGCACCTCGGTGTCGCAGCTC GGCCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13244:128..3936+

>mRNA_Ecto-sp13_S_contig13244.2614.1 ID=mRNA_Ecto-sp13_S_contig13244.2614.1|Name=mRNA_Ecto-sp13_S_contig13244.2614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13244:128..3936+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATCTGCACACGAAGCAGCGGTGTTAGCGGCGGCAGCGGCGGCGGC
GGCGGGCATTCCTGGTAGCGGTGGCGGCAGCGGCACCAGCGCCGAGCAGC
CGGGCTCGCCCGACTCGATAGGCAGCTTGGGAACTGCAAGGCAGCTCCAC
GGGTCAGAGGCTTTGCCGGCGGGAGAGGGGGGCGGCGAGCAGGCAACTTC
GCCACCACCGCTGCCGCCACCGGTGCCGGCCGCGAAGCCTTGTCTGCTGT
TGGACCTCGAGAAGAAGCCTCTGCTGAAGGTGTTCGTCTTTCTTAACGCC
GGGGAGGTGCTCCGCGCGGCGCAGGTCTGCCGGCCCATGTTCCGCAAGGT
GGACCTAATGTTCGGCATCGGCAGTCAGGCGGTGAGTGCCGAGCCGACCC
CTCCTGCACCCCCTCCTGCCCCGTCTGCCGCTGCGGGCATTGTCACCGGG
GGCGGTGCCCCAGCCGGCGCAAGAGATCGAGCGGGATCAGCCGCGTCGGC
GTCGTCGGCGTCGACCGGGGCACCGGGGAATCGGCTCGGACAGAGAGCAC
TAGCCAGTGCTCTCGGGGTAGTGGCTAGCAGGGTGGAGGCCGTCACCGCG
GGAGCGAGCAGCGGCTTCGGCTCCTTAGCGGGAGCGGCGGCGACCTTAAC
CGGGGCCGGCGATGGCGGCTCGGGGCCGGGCGGCGGTGGCGGCAGCGGCA
GTGGCGGGATGTCGCCGGAGCTGATGGACGACCTGTCGAAGCGGCTGACG
ACGGTCGAGATGAAGGGGATCATCCAGCTCACGGAGCGAGGGAGAAGGAT
GGAGGCGAGGGCGGGAGCCTTACAGGCTGAGAAGGAGGACCTCTTCGCCA
GGCTTCAGGGCACGGAGAGCGTGAAGGAGTTCCTGGTGGCCAAGCTCAAG
GACACGGAGGCCGCCCTTAAGCGCAGCCTCGACGAGAAGGGCCTGACGCT
GAGGCAGTCGGCGTCCGACCAAGAGGTCATCTCCTTCTTGGACTCCAGAA
CACAGGAAATGGAAAGGGTGGCGCAGGAGACGATGGATAAGGCCATGACC
TACCAGACCGAGCTTGAGAACCAGAAGGCCAGCGGCCAGAAGCAGACCAA
GGTCCTGGAGGACATGCTAAGGTTCGAGAAGCAGCGGGGGGAGGCCGGCG
AGGCCGCCTTCAAGGCCCAGAAGAAGCTTTTGGTGGCCGAGGTGAAGAAG
CTGAGGACGACCAACCTGGCGCTCAAGGCCGAGTGCGACGACCTGCGGCA
GCAGCTCAAGGACCTCCGCACCTCGGTGTCGCAGCTCGGCCGATGA
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