mRNA_Ecto-sp13_S_contig13235.2609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13235.2609.1
Unique NamemRNA_Ecto-sp13_S_contig13235.2609.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13235.2609.1 vs. uniprot
Match: D7FMJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.900e-48
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 2 
Query:  170 MALGLVVARWLLLRTGDGPSAPFGKELTRTCWKLMAATRGKRRELVGSCACSRIWSRHRHRYEDNSPTMRLPAGEAVHEHAAEEISRGGEATAHVVQHHWT 472
            MALGLVVARWLLLRTGDGPSAPFGKELTRTCWKLM ATRGKRRELVGSCACSR+ S+HRHRY+DNS  MRL AG AV +  AE ISRG EA AHVVQ HWT
Sbjct:    1 MALGLVVARWLLLRTGDGPSAPFGKELTRTCWKLMVATRGKRRELVGSCACSRMLSKHRHRYDDNSARMRLRAGGAVRKRTAEGISRGREAMAHVVQRHWT 101
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BLAST of mRNA_Ecto-sp13_S_contig13235.2609.1 vs. uniprot
Match: A0A6H5L6Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.970e-45
Identity = 86/107 (80.37%), Postives = 86/107 (80.37%), Query Frame = 2 
Query:  170 MALGLVVARWLLLRTGDGPSAPFGKELTRTCWKLMAATRGKRRELVGSCACSRI----WSRHRH--RYEDNSPTMRLPAGEAVHEHAAEEISRGGEATAHVVQHHWT 472
            MALGLVVARWLLLRTGDGPSAPFGK LTRTCWKLM ATRGKRRELVGSCACSRI    WSRHRH       SP MRLPA EAV E  AE ISRG EATAHVVQ HWT
Sbjct:    1 MALGLVVARWLLLRTGDGPSAPFGKGLTRTCWKLMVATRGKRRELVGSCACSRICSRIWSRHRHDXXXXXXSPRMRLPAVEAVRERTAEGISRGREATAHVVQRHWT 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13235.2609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMJ1_ECTSI1.900e-4883.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y1_9PHAE3.970e-4580.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13235contigEcto-sp13_S_contig13235:2802..4754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1417
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000500.1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.949852-UTR-Ecto-sp13_S_contig13235:2801..35281681462707.949852-UTR-Ecto-sp13_S_contig13235:2801..3528Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13235 2802..3528 -
1681462707.9811952-UTR-Ecto-sp13_S_contig13235:4442..47541681462707.9811952-UTR-Ecto-sp13_S_contig13235:4442..4754Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13235 4443..4754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.9609494-CDS-Ecto-sp13_S_contig13235:3528..36211681462707.9609494-CDS-Ecto-sp13_S_contig13235:3528..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13235 3529..3621 -
1681462707.971561-CDS-Ecto-sp13_S_contig13235:4157..44421681462707.971561-CDS-Ecto-sp13_S_contig13235:4157..4442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13235 4158..4442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13235.2609.1prot_Ecto-sp13_S_contig13235.2609.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13235 3529..4442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13235.2609.1

>prot_Ecto-sp13_S_contig13235.2609.1 ID=prot_Ecto-sp13_S_contig13235.2609.1|Name=mRNA_Ecto-sp13_S_contig13235.2609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MRMQQDMEQAPPPVRRQQPDDAATGGGGGARTRGGGNQSRGRGHGPCRTT
PLDVARPLPSPPRATRASSPSSISTPLRDVVPVGGGTNQRERAPAGAGGA
TGTHGRRGQQQNNHREVICLDCDSD*
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mRNA from alignment at Ecto-sp13_S_contig13235:2802..4754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13235.2609.1 ID=mRNA_Ecto-sp13_S_contig13235.2609.1|Name=mRNA_Ecto-sp13_S_contig13235.2609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13235:2802..4754- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAATACCAGCATCAGTTGGAGTTTGCCCATGACGGAACTAGCTCCAC
CACCACGACCGCTTCCCGCACACCAAACTCATCTCCAGGAGGAAGGGGGC
AAACACTAGAGGGCGGGGGGGGCGGGACAAGCGGTCGCGGCACTACGGGG
AGAGCAGTCAGCTCGCTCAATGGCACTGGGGCTCGTGGTCGCAAGGTGGC
TGTTGCTGCGGACAGGCGACGGGCCGAGCGCACCCTTCGGAAAGGAACTG
ACCAGAACCTGCTGGAAGCTCATGGCGGCGACGCGAGGGAAGCGCAGAGA
ACTCGTTGGATCATGCGCATGCAGCAGGATATGGAGCAGGCACCGCCACC
GGTACGAAGACAACAGCCCGACGATGCGGCTACCGGCGGGGGAGGCGGTG
CACGAACACGCGGCGGAGGAAATCAGTCGCGGGGGAGAGGCCACGGCCCA
TGTCGTACAACACCATTGGACGTAGCGCGACCTTTGCCTTCACCGCCCCG
TGCCACCCGCGCATCGTCACCCTCGTCGATTTCGACGCCTCTTCGCGACG
TCGTCCCGGTCGGCGGTGGTACCAACCAGCGTGAGCGTGCGCCGGCGGTG
AGTGCTGCTTAAAGAGTGATGTTTTGGTTGTTTTGCATCTTTCAAGGGTG
TGCGCAAGTGCACCCGAAATATTTTTTTGGGCGTTGGCCTTCGTGTCGTC
AATGCATGCCACACACTTCGAGACTCGGCATTGAATGATGGACGACAGCG
CTCTTGCCGTTGCGACCACTTGTTTCGAACTAGAGTACCCTGCCATCGGT
TCACCTATACTAGTAAATTTCCCAAGCGACCTAAATTCTATCCCTTTCCG
CTGTGGTAGGGGTTATTGCTGCCATATGGTACAATACAGCGTCGTTTTTT
GCCGCGATGCACGACTTCGCTTGACGTTTCTTCCCTGTGGAACACGTTTG
AGTACCATGGTTTACACTAGGATAAAAGGTTTGCGGCGTATTCCAATATC
ATATTGGATGGGTGGCCTTGATATCCACCCGTCATTAGTGTTAAAGCTTT
CCCTTTCAATACGTTGCTCAAGCATCATGTGGCCTGTTTTTTTTTGCTAA
TCTCTTGCCTGCCCTTCGACGTTTTGACCACAGGGCGCGGGGGGAGCGAC
AGGCACTCACGGTAGGCGAGGGCAACAACAAAACAACCACCGAGAGGTCA
TTTGCCTGGACTGCGATTCTGATTAGTGAGAGGATAGACAGGCTGTTTGA
TGTTCGACAGTCGATCGCGACCATGAAGAAGGCAAGATGCTGGGAATGAA
ACAACACATGGACACATGGAACATGGAAAGGGTCACTGAAGTGTTCATTC
CATTATTTCAATTCTAGCAGCCTCTAAAGGAACCTCCTTTCCCCGAATGG
GTTGACATGACGTGTTGCCAAGTTGCTGCCGCATATGCAAACCAAAGTGC
CGAGCGGCGTTGTGCTTCGTGCAGACTGGGAGGGGTGCTTGGATCCAAAC
AGACCCCTTGGCGCTAGCGTGTGGTTCGAGCTGGTCTGACATTGGAAATT
TCTGGGGCTGATGTACATATGAATTCAAGATGGTGTGGGGGCACTGATGT
GCATGTCCTAATGTATAGAATACGACAGCAGCACGCGCGCTGAATTCGTG
TCGAGCATGCAGCGCAACAGCGTTGTCGTCATGTACATATTTGCACGCGT
AGGTTTCATGTTGTTTGCTCAGAGCGGAATCCGGGGAGGTGTTTCATGAA
GTTTGCTCAGAGCGGGATCCGGTGGGAAGTGTTTTGTAATACGCGACATG
GCGCGTCGAGCATATGTGGGACGGTTTGAAACTTCGAATTGGTCACAAGA
CACCAGAGTTACTGATACATATCGTATATTGTGTGGCTTGCCTGGGTTTT
GATTGATGTCATGGTTCGTCGAAGGCTGATCTATACTGCTCTGTTGGTTT
GTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13235:2802..4754-

>mRNA_Ecto-sp13_S_contig13235.2609.1 ID=mRNA_Ecto-sp13_S_contig13235.2609.1|Name=mRNA_Ecto-sp13_S_contig13235.2609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13235:2802..4754- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATGCAGCAGGATATGGAGCAGGCACCGCCACCGGTACGAAGACA
ACAGCCCGACGATGCGGCTACCGGCGGGGGAGGCGGTGCACGAACACGCG
GCGGAGGAAATCAGTCGCGGGGGAGAGGCCACGGCCCATGTCGTACAACA
CCATTGGACGTAGCGCGACCTTTGCCTTCACCGCCCCGTGCCACCCGCGC
ATCGTCACCCTCGTCGATTTCGACGCCTCTTCGCGACGTCGTCCCGGTCG
GCGGTGGTACCAACCAGCGTGAGCGTGCGCCGGCGGGCGCGGGGGGAGCG
ACAGGCACTCACGGTAGGCGAGGGCAACAACAAAACAACCACCGAGAGGT
CATTTGCCTGGACTGCGATTCTGATTAG
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