mRNA_Ecto-sp13_S_contig13231.2608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13231.2608.1
Unique NamemRNA_Ecto-sp13_S_contig13231.2608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13231.2608.1 vs. uniprot
Match: D8LLA2_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA2_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 1.900e-129
Identity = 285/518 (55.02%), Postives = 325/518 (62.74%), Query Frame = 2 
Query:  506 GGISDDSGPRSTEASSGLSGKGIEVFRSSPTTVSHDHEVLGNEKRIIEGAAQQNIAKERGDVSGNRSGPLQDASFLSGNIQSEIGNGETQATKKNTAEKDMYELEECGSHKGSTRPKNPFAAWSNAERCVASTARSEPVKNR*RRKAQLRRRDMN*RGAA-HASAMQGRGTPC*HGATPSVAYASTARSAT---------TKHRRRRKTQLRR*GMN*RGVAHASSVTRQGTPCYPGATPSVGSGGSAVDTTRCRGPPDQAHSSFANTSRRTEXXXXXXXXXXXXXDVTKSTPPEVIAREGGDLMQDNGGIGANTPRPLAQSNSDKPELQSEKGTEQQRQPEDGSRLRARRVGNLRTLALVLREAEDAICAGERGGQDDRGSGGRVVDRHRAQASLSPVASDQFRRRKAEEVMAGDQDALASTCCLRPFWEAIQLG-----FLVRAAAGGRASTGRRAILGGYCRGGGRGTHPDGRGDRTGGLRRGVRADHRRQEKARRRPAVH--CGKELVLKGPLQ 2008
            GGIS+DSGPRST+ASSGLSGKGIEVF SSPTTVSHDHEVLGNEKRI+EGAAQQNIA ERGDV GNRSGPLQD SFLSGNI SEIG+GETQATKKNTAEK+ Y+LEECGSHK S R +NP AAWSNAER V+        + +  +K+   +      G   H  + + R         P +A+++  RS +         T+  ++   +  R  +   G    S   R     +  A  SV   G   D    +G PDQA SSFANTSRRTE             DVT+ST PEVIA EG DL+Q++ G+GANTPRPLA  NSDK ELQSEKGTEQQRQPEDGSRLRARRVG L  LALVLREAEDAICAGERGGQDDRGSGG VVD+HRAQASLSPVA DQ  R+ AEEV AGD DALA    L    EAI  G     F  +         G  A L         G    G     GG   GV  +    E+ +R  A+    G+ELVLKGPLQ
Sbjct:  497 GGISEDSGPRSTDASSGLSGKGIEVFHSSPTTVSHDHEVLGNEKRIVEGAAQQNIATERGDVLGNRSGPLQDVSFLSGNIHSEIGDGETQATKKNTAEKERYDLEECGSHKRSARSRNPLAAWSNAERRVSIHREIGAGEKQVTKKSTAEKEGHELAGCGPHKRSARPR--------NPLLAWSNAERSVSIHREIGDSETQATKKDTAEKARNELAGCGSHKCSVRPRNPLLAWSNAERSVSVLGGRHDA--LQGSPDQATSSFANTSRRTEERDTTDSDQGGGGDVTQSTLPEVIAGEGCDLVQEDSGVGANTPRPLAIGNSDKSELQSEKGTEQQRQPEDGSRLRARRVGKLNALALVLREAEDAICAGERGGQDDRGSGGSVVDKHRAQASLSPVADDQSGRQTAEEVKAGDGDALA----LDMLSEAILGGDFNRDFSYKQRREAELQQGGVAFLADITEAEDAGLIQMGEVVGRGGY--GVVCEVTIVERRKRAAALRYTAGRELVLKGPLQ 998
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BLAST of mRNA_Ecto-sp13_S_contig13231.2608.1 vs. uniprot
Match: A0A6H5L188_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L188_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.130e-79
Identity = 196/369 (53.12%), Postives = 220/369 (59.62%), Query Frame = 2 
Query:  506 GGISDDSGPRSTEASSGLSGKGIEVFRSSPTTVSHDHEVLGNEKRIIEGAAQQNIAKERGDVSGNRSGPLQDASFLSGNIQSEIGNGETQATKKNTAEKDMYELEECGSHKGSTRPKNPFAAWSNAERCVASTARSEPVKNR*RRKAQLRRRDMN*RGAAHASAMQGRGTPC*HGATPSVAYASTARSATTKHRRRRKTQLRR*GMN*RGVAHASSVTRQGTPCYPGATPSVGSGGSAVDTTRCRGPPDQAHSSFANTSRRTEXXXXXXXXXXXXXDVTKSTPPEVIAREGGDLMQDNGGIGANTPRPLAQSNSDKPELQSEKGTEQQRQP--EDGSRLRARRVGNLRTLALVLREAEDAICAGERGGQ 1606
            GGIS+DS PRST AS+GLSG  IEVFR SP TV +DHE  GNEK+I+EGAAQ++  KERGD+ GNR G LQD SFLSGNI  EIG+GETQATKKNTAEK+ YELEECGSHK STRP+NP AAWSNA+R V           R         R++   G + A A +                                          +  A                    G G       R    PDQA SS  NTSRRTE    XXXXXXXXX  T+STPPE IA EGGD++Q+  G+ ANTPR LA  NSDK +LQSEKGTE+QRQ   EDGSRLRA RVG L  LALVLREAEDAICAGERGGQ
Sbjct:  549 GGISEDSRPRSTCASTGLSGNSIEVFRFSPITVLYDHEAFGNEKQIVEGAAQEDTTKERGDILGNRRGSLQDVSFLSGNIHIEIGDGETQATKKNTAEKERYELEECGSHKRSTRPRNPSAAWSNAKRSVXXXXXXXXXSIR---------REI---GNSEAQATK------------------------------------------KDTAEXXXXXXXXXXXXXXXXXXSGCGARHDALQRS---PDQAPSSVVNTSRRTEERDTXXXXXXXXXXETQSTPPEAIAGEGGDIVQEIVGVDANTPRLLAIGNSDKSDLQSEKGTERQRQRQLEDGSRLRAWRVGKLSALALVLREAEDAICAGERGGQ 860
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13231.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA2_ECTSI1.900e-12955.02N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L188_9PHAE1.130e-7953.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13231contigEcto-sp13_S_contig13231:374..2576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2008
Hectar predicted targeting categoryother localisation
Exons2
Cds size621
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.8802652-UTR-Ecto-sp13_S_contig13231:373..5801681462707.8802652-UTR-Ecto-sp13_S_contig13231:373..580Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13231 374..580 +
1681462707.8897834-UTR-Ecto-sp13_S_contig13231:775..19551681462707.8897834-UTR-Ecto-sp13_S_contig13231:775..1955Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13231 776..1955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.8998265-CDS-Ecto-sp13_S_contig13231:1955..25761681462707.8998265-CDS-Ecto-sp13_S_contig13231:1955..2576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13231 1956..2576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13231.2608.1prot_Ecto-sp13_S_contig13231.2608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13231 1956..2576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13231.2608.1

>prot_Ecto-sp13_S_contig13231.2608.1 ID=prot_Ecto-sp13_S_contig13231.2608.1|Name=mRNA_Ecto-sp13_S_contig13231.2608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
MQDNGGIGANTPRPLAQSNSDKPELQSEKGTEQQRQPEDGSRLRARRVGN
LRTLALVLREAEDAICAGERGGQDDRGSGGRVVDRHRAQASLSPVASDQF
RRRKAEEVMAGDQDALASTCCLRPFWEAIQLGFLVRAAAGGRASTGRRAI
LGGYCRGGGRGTHPDGRGDRTGGLRRGVRADHRRQEKARRRPAVHCGKEL
VLKGPLQ
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mRNA from alignment at Ecto-sp13_S_contig13231:374..2576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13231.2608.1 ID=mRNA_Ecto-sp13_S_contig13231.2608.1|Name=mRNA_Ecto-sp13_S_contig13231.2608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13231:374..2576+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATGTGGCGCGATGCCCTCGTACAGCTCAGGACGGTGACGACCACCCGGG
CGGTGCTATGGACGAGACTTTGCCGCTCGGAGATGAATCCAGCTGGTACG
TACCATTCAGCACCACGATTATCTCCACGCCTTGCAAGGCATGTGTGCAT
AGTACAACACGCACAAAGGCCGCTGTTGTACCCGGGTCAAACCACCCGTC
GCGCTGCGTACTAGCGGAGGGATAAATGTACAAGAAAGCGTTGTTTTCCC
CTTGCCTTCTTGTGACAAGTGTTTAGCAGTAGGCTTGTTTCTGTTGACCC
GTGCAACCATTCGCAGCGCTGCACCGACTGGAGAAGAACACAGGGGGTTA
TCCGCGTGTTCACCGTTCCGCATTGTGTACAAACCCCGACATATGACAAG
AGCCAATGACACCGAAACCGTGCACATACGTGGGAAACGGCAGCACCAGC
ACCAGTACCGTCGTTGTGTGTTTCGAGGGCGAAAAAGAGTAAATTGCGGC
TACGAAGATTTTCGAGGAAGAAGAGTGCGGGAAGGCAGGTGAGGAGCAAG
ACACGGTGGTGGGGTACACAAACGTTTCGGAGGAAGAGAGGGAGGAGGAA
GAGAAGGAGGAGGAAGAGAAGGAGGAGGAGAAGGAGGTGGTGGCATCGGG
TGATAGTGTAGGTGCTATTCCGAACAGCGTCTTTCCTTGTGAGTCAGTGG
GGCGGCATCTCTGATGATTCCGGACCGAGATCAACCGAAGCGTCTTCTGG
GCTGAGCGGGAAGGGCATTGAAGTGTTCCGCTCTTCTCCGACTACGGTCT
CGCACGATCATGAGGTCCTCGGGAACGAAAAGCGAATCATCGAGGGTGCG
GCCCAGCAGAACATCGCGAAGGAGAGGGGGGACGTCTCGGGCAACCGGAG
TGGCCCGCTACAGGACGCCTCGTTTCTGTCCGGCAATATCCAAAGCGAGA
TCGGCAACGGCGAAACACAGGCTACGAAAAAGAACACAGCTGAGAAGGAC
ATGTATGAACTAGAGGAGTGTGGCTCACACAAGGGCAGTACAAGGCCAAA
GAACCCCTTCGCAGCCTGGAGCAACGCCGAGCGATGCGTTGCATCCACCG
CGAGATCGGAGCCGGTGAAGAACAGGTGACGAAGAAAAGCACAGCTGAGA
AGGAGGGATATGAACTAGCGGGGTGCGGCCCACGCAAGCGCAATGCAAGG
CCGAGGAACCCCCTGCTAGCATGGAGCAACGCCGAGCGTAGCGTATGCAT
CCACCGCGAGATCGGCGACAACGAAGCACAGGCGACGGAGAAAGACACAG
CTGAGAAGGTGAGGTATGAATTAGAGGGGTGTGGCTCACGCAAGCTCAGT
GACACGCCAAGGAACCCCTTGCTACCCTGGAGCAACGCCGAGCGTAGGGT
CAGGGGGCTCGGCGGTCGACACGACGCGCTGCAGGGGGCCTCCCGACCAG
GCACACTCCAGCTTTGCCAATACTTCTCGTCGCACGGAGGAGCAGGACAC
AACCGACAGCGATCAGGGTGGTGGTGGTGATGTGACCAAATCAACGCCCC
CAGAGGTAATCGCGAGAGAAGGCGGCGATCTTATGCAGGACAACGGTGGT
ATCGGTGCCAACACGCCGCGACCCCTAGCGCAAAGTAACTCTGACAAGCC
TGAGCTTCAAAGCGAGAAGGGGACGGAGCAGCAGCGGCAGCCAGAGGATG
GAAGTCGTTTGCGGGCTCGGCGAGTGGGCAACCTTAGAACCCTGGCCCTT
GTCCTCCGGGAAGCCGAGGACGCCATCTGCGCAGGAGAGCGCGGTGGCCA
GGATGACCGCGGCAGCGGCGGCCGCGTTGTAGACAGGCACAGAGCACAAG
CGTCGCTCTCCCCGGTGGCCAGCGACCAATTCAGGAGGCGAAAGGCGGAA
GAGGTTATGGCGGGCGACCAAGACGCCCTCGCCTCGACATGCTGTCTGAG
GCCATTCTGGGAGGCGATTCAACTGGGATTTCTCGTACGAGCAGCGGCGG
GAGGCCGAGCTTCAACAGGGAGGCGTGCCATTCTTGGCGGATATTGCCGA
GGCGGAGGACGCGGGACTCATCCAGATGGGCGAGGTGATCGGACAGGGGG
GCTACGGCGTGGTGTGCGAGCTGACCATCGTCGACAGGAGAAAGCGCGCC
GCCGCCCTGCGGTACACTGCGGGAAGGAGCTTGTACTGAAGGGACCTCTG
CAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13231:374..2576+

>mRNA_Ecto-sp13_S_contig13231.2608.1 ID=mRNA_Ecto-sp13_S_contig13231.2608.1|Name=mRNA_Ecto-sp13_S_contig13231.2608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13231:374..2576+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGACAACGGTGGTATCGGTGCCAACACGCCGCGACCCCTAGCGCA
AAGTAACTCTGACAAGCCTGAGCTTCAAAGCGAGAAGGGGACGGAGCAGC
AGCGGCAGCCAGAGGATGGAAGTCGTTTGCGGGCTCGGCGAGTGGGCAAC
CTTAGAACCCTGGCCCTTGTCCTCCGGGAAGCCGAGGACGCCATCTGCGC
AGGAGAGCGCGGTGGCCAGGATGACCGCGGCAGCGGCGGCCGCGTTGTAG
ACAGGCACAGAGCACAAGCGTCGCTCTCCCCGGTGGCCAGCGACCAATTC
AGGAGGCGAAAGGCGGAAGAGGTTATGGCGGGCGACCAAGACGCCCTCGC
CTCGACATGCTGTCTGAGGCCATTCTGGGAGGCGATTCAACTGGGATTTC
TCGTACGAGCAGCGGCGGGAGGCCGAGCTTCAACAGGGAGGCGTGCCATT
CTTGGCGGATATTGCCGAGGCGGAGGACGCGGGACTCATCCAGATGGGCG
AGGTGATCGGACAGGGGGGCTACGGCGTGGTGTGCGAGCTGACCATCGTC
GACAGGAGAAAGCGCGCCGCCGCCCTGCGGTACACTGCGGGAAGGAGCTT
GTACTGAAGGGACCTCTGCAG
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