mRNA_Ecto-sp13_S_contig1323.2607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1323.2607.1
Unique NamemRNA_Ecto-sp13_S_contig1323.2607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: D8LHV9_ECTSI (Putative: silimar to centromere/kinetochore protein zw10 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHV9_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 7.190e-63
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 3
Query:    3 IPSHCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            IP HCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLG+EFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQ+RQQRQL EFF+GVD
Sbjct:  534 IPLHCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGHEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQQRQQRQLHEFFVGVD 641          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A836CAB9_9STRA (Centromere/kinetochore Zw10-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.140e-25
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    3 IPSHCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            +P   A+ELFRTARD+L+LFRAVVP +H   +  VPR+AA+F NDC +LAHH  T+G+ +R  LPPP N  ATM+D +               +RQ+ QL EF  G D
Sbjct:  836 VPPLIARELFRTARDVLELFRAVVPARHGEQMQNVPRLAALFHNDCAFLAHHAATIGHRYRQRLPPPVNSVATMVDMI---------------QRQREQLLEFCAGAD 928          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A7S2RK91_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK91_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.530e-24
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    9 SHCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGV 323
            S  A  L+RTAR+++DLFRAV+P +H+  L  +PR AA+F NDCLYLAH  +TL +++R  LP P N+TAT++D V   R L       Q   QQ QL EF  GV
Sbjct:  556 SLAAATLYRTARELMDLFRAVIPQRHSETLQSLPRSAALFHNDCLYLAHEALTLAHQYRGRLPAPLNKTATLVDVVPALRSLGEQVLQRQISLQQGQLDEFLKGV 660          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A7S3Y8L3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8L3_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 3.950e-23
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   42 RDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEF-----FIGVD 326
            RDMLD+FRAVVP+ HA+AL   PR+AA+F NDCLY+AHH++ + + +R  LP P NQTA  +D V  FREL       +  RQ+  L        F+G+D
Sbjct:    1 RDMLDMFRAVVPLAHADALAASPRLAALFHNDCLYIAHHLMVMAFLYRPKLPEPLNQTAQTVDMVPAFRELGEKHLRAEIARQRAALGRALGAAPFLGLD 100          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: UPI0014257F86 (centromere/kinetochore protein zw10 homolog n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257F86)

HSP 1 Score: 98.6 bits (244), Expect = 9.200e-22
Identity = 45/104 (43.27%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   15 CAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQ-TATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGV 323
            CA +LF+T R M +L+ AV+P  H ++L   P+++A+  N+C+Y+AHH++TLG+++R  LPPP  Q +AT +D +  FR LA   F EQ R Q+ Q+ E+  G 
Sbjct:  469 CATQLFQTTRSMFELYCAVIPTYHKDSLAKFPQLSALHHNNCMYIAHHLLTLGHQYRDQLPPPLCQGSATFVDEIPQFRHLATDCFMEQMRTQRNQVIEYLNGA 572          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A1Y1X702_9FUNG (Centromerekinetochore Zw10 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1X702_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 1.710e-21
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    6 PSHCAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQE 308
            P   A EL+  ARD+ +LFRA+VP+ +A+A++ +P  + +F NDC Y+ HH++TLGY+ +H  P P +QT T ID V  FR L    F    +RQ+ Q+Q+
Sbjct:  489 PKAGAIELYLCARDIFNLFRALVPIHNADAIENIPLRSLIFYNDCAYITHHLLTLGYQHKHFFPSPLDQTGTFIDLVPYFRNLGEGCFKNHMKRQKLQIQQ 589          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A8B7YKW3_ACAPL (centromere/kinetochore protein zw10 homolog n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YKW3_ACAPL)

HSP 1 Score: 97.4 bits (241), Expect = 2.340e-21
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   15 CAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQ-TATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            CA +LF T R+M ++F  VVP  H ++L+ +P++ A+  N+C+Y+AHH++TLG+++R  LPPP     +T +D + +FR+LA+  F  Q R Q+ QL E  +G +
Sbjct:  476 CAIQLFYTVRNMFEIFCDVVPTYHRDSLEKLPQLCALHHNNCMYIAHHLLTLGHQYRQSLPPPLRDGLSTFVDLIPVFRKLASQCFLAQMRTQRDQLLESLVGAE 580          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: UPI0018D7A348 (centromere/kinetochore protein zw10 homolog isoform X2 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7A348)

HSP 1 Score: 96.7 bits (239), Expect = 4.350e-21
Identity = 44/105 (41.90%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   15 CAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPP-ANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            CA +LF T R+M ++F  VVP  H ++L  +P++ A+  N+C+Y+AHH++TLG+++R  LPPP  + T+T +D + +FR+LA+  F  Q R Q+ QL E   G +
Sbjct:  467 CAIQLFYTVRNMFEIFCDVVPTYHRDSLQKLPQVCALHHNNCMYIAHHLLTLGHQYRQSLPPPLCDGTSTFVDLIPVFRKLASECFLAQMRIQRDQLVESLSGAE 571          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: UPI0018D814D0 (centromere/kinetochore protein zw10 homolog isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D814D0)

HSP 1 Score: 96.7 bits (239), Expect = 4.350e-21
Identity = 44/105 (41.90%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   15 CAKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPP-ANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            CA +LF T R+M ++F  VVP  H ++L  +P++ A+  N+C+Y+AHH++TLG+++R  LPPP  + T+T +D + +FR+LA+  F  Q R Q+ QL E   G +
Sbjct:  476 CAIQLFYTVRNMFEIFCDVVPTYHRDSLQKLPQVCALHHNNCMYIAHHLLTLGHQYRQSLPPPLCDGTSTFVDLIPVFRKLASECFLAQMRIQRDQLVESLSGAE 580          
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Match: A0A0D2WI78_CAPO3 (Centromere/kinetochore protein zw10 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WI78_CAPO3)

HSP 1 Score: 96.7 bits (239), Expect = 4.380e-21
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   18 AKELFRTARDMLDLFRAVVPVQHANALDGVPRIAAVFQNDCLYLAHHMVTLGYEFRHGLPPPANQTATMIDTVHLFRELAAHSFSEQQRRQQRQLQEFFIGVD 326
            A  LF   RDM DL+RAVVPV H    + VP +  +F NDC+++AHH++TLG +F+  LPPP N TAT +D V  FR+L    F  Q   Q+  L E  +  +
Sbjct:  524 AVHLFVAVRDMFDLYRAVVPVHHGATFERVPMLGMLFHNDCMFIAHHLITLGIQFKSRLPPPMNATATFVDMVVPFRQLGERFFVHQMDLQRDLLIEAIVSAN 626          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1323.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHV9_ECTSI7.190e-6395.37Putative: silimar to centromere/kinetochore protei... [more]
A0A836CAB9_9STRA2.140e-2548.15Centromere/kinetochore Zw10-domain-containing prot... [more]
A0A7S2RK91_9STRA2.530e-2449.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y8L3_HETAK3.950e-2348.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0014257F869.200e-2243.27centromere/kinetochore protein zw10 homolog n=1 Ta... [more]
A0A1Y1X702_9FUNG1.710e-2143.56Centromerekinetochore Zw10 n=1 Tax=Basidiobolus me... [more]
A0A8B7YKW3_ACAPL2.340e-2140.95centromere/kinetochore protein zw10 homolog n=1 Ta... [more]
UPI0018D7A3484.350e-2141.90centromere/kinetochore protein zw10 homolog isofor... [more]
UPI0018D814D04.350e-2141.90centromere/kinetochore protein zw10 homolog isofor... [more]
A0A0D2WI78_CAPO34.380e-2144.66Centromere/kinetochore protein zw10 n=1 Tax=Capsas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1323contigEcto-sp13_S_contig1323:16364..17360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size327
Hectar predicted targeting categorymitochondrion
Exons3
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.6880631-UTR-Ecto-sp13_S_contig1323:16363..164241681462707.6880631-UTR-Ecto-sp13_S_contig1323:16363..16424Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1323 16364..16424 -
1681462707.6969419-UTR-Ecto-sp13_S_contig1323:16764..168041681462707.6969419-UTR-Ecto-sp13_S_contig1323:16764..16804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1323 16765..16804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.709291-CDS-Ecto-sp13_S_contig1323:16804..169611681462707.709291-CDS-Ecto-sp13_S_contig1323:16804..16961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1323 16805..16961 -
1681462707.7187166-CDS-Ecto-sp13_S_contig1323:17292..173601681462707.7187166-CDS-Ecto-sp13_S_contig1323:17292..17360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1323 17293..17360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1323.2607.1prot_Ecto-sp13_S_contig1323.2607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1323 16805..17360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1323.2607.1

>prot_Ecto-sp13_S_contig1323.2607.1 ID=prot_Ecto-sp13_S_contig1323.2607.1|Name=mRNA_Ecto-sp13_S_contig1323.2607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
RSRLIALRSCSVRRGTCSTFSGRWFPSNTPTPWTASLASRRSSRTTASTS
RTTWSLSATSSDTACLPQLTRRPQ*
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mRNA from alignment at Ecto-sp13_S_contig1323:16364..17360-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1323.2607.1 ID=mRNA_Ecto-sp13_S_contig1323.2607.1|Name=mRNA_Ecto-sp13_S_contig1323.2607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1323:16364..17360- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATCCCGTCTCATTGCGCTAAGGAGCTGTTCCGTACGGCGAGGGACATG CTCGACCTTTTCAGGGCGGTGAGGTCAATGTTGTTGACTACTTCGTGCCA TCCTTATCTTCTACCGAGTACATGTGTTTTAGGTTTCATGTGAACTAGCT CTGGTTCGAAGTGATGCTAGTGTGCCTTCCGCACACCTGATACAGTGTGC AGTTCGCACACCACACGCAGACAATGTCCAAAAACAATCACAGGGTCGGC TGCACAAAAGATACATATGTAAAAAAAATAGCACCTCGTCGTGCCAGCAG GTTCTTGTCTTTCGACATTGCGATGCCTTGAGACACTACCGCTACCTACA TTTCAGAATTCGTGTGTGCCACGTTAACGCGATATCGCATGATTTTCAGG TGGTTCCCGTCCAACACGCCAACGCCCTGGACGGCGTCCCTCGCATCGCG GCGGTCTTCCAGAACGACTGCCTCTACCTCGCGCACCACATGGTCACTCT CGGCTACGAGTTCCGACACGGCTTGCCTCCCCCAGCTAACCAGACGGCCA CAATGATCGACACCGTGCACCTTTTCCGAGAACTAGCTGCGCACAGGTGA TTCGTTCGCAGGCGTGAAAGTTGTCAGTTTTGCAGCCCGCGGGGGGTCGT GTGTGCGTGTGGTGTGTTGGGGAAACTGGGGCTGATGTTTGTTAGGGGTG AAGTGTGTGCAGATGTGCCACTATTTCGTCTCGGCAGCCGCGATGGTTCT AGCAGAGGCAGGAGTAGAAAGGACATGTGTGCGATGGATCAAAATGCGCC GGAAAAGAAGGTATTGTACGTACCACAGATTGATTCCCTCCCCGTACAAA CTGTGTTCTACCCCCCTTTCAACCGCCAATACCGTTCAACCTCGTGTTTC CGTTTCCCCTCATTCATGCACGTGACGTCATACCAGCTTCTCCGAGCAGC AGCGGCGGCAACAGCGGCAGCTGCAGGAGTTCTTCATCGGAGTGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1323:16364..17360-

>mRNA_Ecto-sp13_S_contig1323.2607.1 ID=mRNA_Ecto-sp13_S_contig1323.2607.1|Name=mRNA_Ecto-sp13_S_contig1323.2607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1323:16364..17360- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATCCCGTCTCATTGCGCTAAGGAGCTGTTCCGTACGGCGAGGGACATG
CTCGACCTTTTCAGGGCGGTGGTTCCCGTCCAACACGCCAACGCCCTGGA
CGGCGTCCCTCGCATCGCGGCGGTCTTCCAGAACGACTGCCTCTACCTCG
CGCACCACATGGTCACTCTCGGCTACGAGTTCCGACACGGCTTGCCTCCC
CCAGCTAACCAGACGGCCACAATGA
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