mRNA_Ecto-sp13_S_contig13221.2604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13221.2604.1
Unique NamemRNA_Ecto-sp13_S_contig13221.2604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A6H5KGC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC5_9PHAE)

HSP 1 Score: 954 bits (2467), Expect = 0.000e+0
Identity = 592/743 (79.68%), Postives = 604/743 (81.29%), Query Frame = 1 
Query:    1 RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASKYRYHRGVHLCASWSRARVVSLTRTLSGCGSISSGFPISGGSPGSCRKGVGPSPLEGPEGSGAEQXXXXXXQ--HPVSRRGSTGVGEDSAGAGAPAGGDGGVKDPXXXXXXXXXXXXXXXXXXXXXXXCLQGAGRRPSAGAALEDDGAPASSPPHWKSNCGTRTGESNGEEGCGAVHARRTPSPGGGEGGGAFWNGPCGSPGGLTSPGFRLSAREALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDEEDEDMGERFVLEEEGWQGARWLENGGGDQIAVGEAAAGREDAGEGRGDGRDAGVREGEGSAGETMLDNGQQSEVAAPAGLPVAGDRSDAPTHAAATGDQPETVTGVDGSVNVSGRAPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXT--------HAAVRQARLTDQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSKTPNPRSTGAWSALRAWADTAPEDPWDVPAPLELPAALARRESXXXXXXXXXAESICREGRGGGGSGQETLLTLPGRVKAEGG 2199
            RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNE                            VIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMF VPDIDMPPQVASKYRYHRGVHLCASWSRARVVSLTRTLSGCGSISSGFPISGGSPGSCRKGVGPSPLEGPEGSG EQXXXXXX   HPVSR+GSTGVGEDSAGAGAPAGG  GV+DP                       CLQGAG+RPSAGAALEDDGAPA SP HWK+NCGT TGESNG+E  GAV ARRTPSPGG  GGGAFWNGPCGSP GLTSP FRLSA EALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEED+EDEDMGERFVLEEEGWQG +W+ENGGGDQ AVGEAAAGREDAGEG GDGRDAGVREGEGSAGETML+NGQQSEVAAP GLPVAGD SDAPTHAAATGDQPETVTGVDGSVNVSG APA   XXXXXXXXXXXXXXXXX   XXXXXXX         HAAVRQARLTDQP   XXXXXXXXXXXXXXXXXXXXXX                                 K SKTP+PRS GAWSALRAWADTAPEDPWDV APLELPAALARRES    XXXX AESI REGR    +GQETLLTLPG+VKAEGG
Sbjct:  125 RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNE----------------------------VIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFLVPDIDMPPQVASKYRYHRGVHLCASWSRARVVSLTRTLSGCGSISSGFPISGGSPGSCRKGVGPSPLEGPEGSGGEQXXXXXXXXXHPVSRQGSTGVGEDSAGAGAPAGGGCGVEDPPPMSGGVPPRSGDPASMNGGASVCLQGAGKRPSAGAALEDDGAPAFSPHHWKNNCGTPTGESNGQEDWGAVQARRTPSPGGSGGGGAFWNGPCGSPEGLTSPSFRLSAGEALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGEQWVENGGGDQSAVGEAAAGREDAGEGGGDGRDAGVREGEGSAGETMLENGQQSEVAAPVGLPVAGDLSDAPTHAAATGDQPETVTGVDGSVNVSGGAPAXXXXXXXXXXXXXXXXXXXXMHAXXXXXXXXXXXXXXXXHAAVRQARLTDQPXXXXXXXXXXXXXXXXXXXXXXXXXTTKPGASSSRGRATSLSPPRSAGPHSLAAV---KSSKTPDPRSAGAWSALRAWADTAPEDPWDVLAPLELPAALARRESTTAAXXXX-AESIRREGRXXXXTGQETLLTLPGKVKAEGG 835
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: D7FNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB6_ECTSI)

HSP 1 Score: 905 bits (2339), Expect = 4.530e-313
Identity = 527/732 (71.99%), Postives = 538/732 (73.50%), Query Frame = 1 
Query:    1 RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASKYRYHRGVHLCASWSRARVVSLTRTLSGCGSISSGFPISGGSPGSCRKGVGPSPLEGPEGSGAEQXXXXXXQHPVSRRGSTGVGEDSAGAGAPAGGDGGVKDPXXXXXXXXXXXXXXXXXXXXXXXCLQGAGRRPSAGAALEDDGAPASSPPHWKSNCGTRTGESNGEEGCGAVHARRTPSPGGGEGGGAFWNGPCGSPGGLTSPGFRLSAREALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDEEDEDMGERFVLEEEGWQGARWLENGGGDQIAVGEAAAGREDAGEGRGDGRDAGVREGEGSAGETMLDNGQQSEVAAPAGLPVAGDRSDAPTHAAATGDQPETVTGVDGSVNVSGRAPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTHAAVRQARLTDQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSKTPNPRSTGAWSALRAWADTAPEDPWDVPAPLELPAALARRESXXXXXXXXXAESICREGRGGGGSGQETLLTLPGRVKAEG 2196
            RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVAS YRYHRGVHLCASWSRARVVSLTRTLSGCGSI+SGFPISGGSPGSCRKGVGPSPLE PEG     XXXXXX HPVSRRGSTGVG DSA AGAPA G       XXXXXXXXX              CLQGAGRRP AGAAL+DDGAPASSPPH K+ CGT TGESNG+EG GAV ARRTPSPG      AFWNG CGSPGGLTSPGFRLSA EALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEED+EDEDMGERF LEEEGWQG RW+ENGGGDQ AVG+AA GRED                 GSAGETML+NG+QSEVAAPAGLPVAGDRSDAP HAAATGDQPETVTGVDGSVN                                                                                                              PSKTPNPRSTGAWSALRAWADTAPEDPWDVPAPLELPAALA +ES         AESI REG     SGQETLLTLPGRVKA+G
Sbjct:   67 RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASNYRYHRGVHLCASWSRARVVSLTRTLSGCGSINSGFPISGGSPGSCRKGVGPSPLEDPEGX---XXXXXXXXHPVSRRGSTGVGADSASAGAPADGXX-XXXXXXXXXXXXXPRSGNPASADGASVCLQGAGRRPFAGAALDDDGAPASSPPHRKNTCGTPTGESNGQEGWGAVQARRTPSPGXXXXXXAFWNGSCGSPGGLTSPGFRLSAGEALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFALEEEGWQGERWVENGGGDQSAVGQAAGGREDXXXXXXXXXXXXXXXXXGSAGETMLENGRQSEVAAPAGLPVAGDRSDAPRHAAATGDQPETVTGVDGSVN--------------------------------------------------------------------------------------------------------------PSKTPNPRSTGAWSALRAWADTAPEDPWDVPAPLELPAALAGKESTAAAAAV--AESIRREGSXXX-SGQETLLTLPGRVKAQG 681
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A835Z9L9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.010e-52
Identity = 97/140 (69.29%), Postives = 114/140 (81.43%), Query Frame = 1 
Query:    1 RMLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASKY 420
            RM AMPDCNT Q+GD FYCFR RKS  +PL SSSLL+QTFEYCYA FRQE+N ECARG FQKSVV+V+RYPYVNLFERL+KVIGPLYF HG+AVLE+  +   +WP P   S   LPFLG+T+ F VP I+MPPQVA+++
Sbjct:   80 RMPAMPDCNTKQLGDSFYCFRIRKSLGLPLFSSSLLEQTFEYCYALFRQEKNAECARGYFQKSVVLVTRYPYVNLFERLIKVIGPLYFQHGAAVLESALAHAREWPLPLIDSHLTLPFLGDTIYFHVPHIEMPPQVAARF 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: UPI0004F099E3 (protein DENND6A n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F099E3)

HSP 1 Score: 105 bits (263), Expect = 4.720e-20
Identity = 54/139 (38.85%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQ-------------TFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVP 384
            L+ PD N+  +GD  +CFR R+SH   +     LDQ              + Y Y +FRQ R++   RG FQKS+V++S+ PYV+LF  ++K I P YF    A LEAV S  + WP P PG +  LP +G  +  ++P
Sbjct:   20 LSFPDSNSGCLGDTQFCFRFRRSHGRKVSLCCFLDQLDRDLPVYLKKDPAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYVHLFRTMLKQIAPEYFERSEAFLEAVCSDVDRWPPPIPGKILHLPIMGVIMKLRIP 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A261Y7Q1_9FUNG (UDENN domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y7Q1_9FUNG)

HSP 1 Score: 106 bits (264), Expect = 5.580e-20
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQT-FEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQV 408
            LA PD N   +GD  + FR R +      +S   +   F Y Y FFRQ+++    RG +QKS+V++S++P++ LF R+VK +GPL+  HG  VLEA  +    WP P PG    +PFLG  +  ++P   + PQ+
Sbjct:  199 LAFPDTNAFLVGDQVFTFRIRSNSSSGFAASGPTNHAGFLYGYVFFRQKKDASIRRGYYQKSIVILSQHPFIGLFSRVVKALGPLFCDHGRPVLEAACTDIASWPIPFPGKCISIPFLGHLLQVELPQ-PLKPQL 332
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A015K202_RHIIW (UDENN domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A015K202_RHIIW)

HSP 1 Score: 105 bits (263), Expect = 8.250e-20
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1 
Query:   10 AMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMP 399
            A PD N+  +GD  + FR R S    + S    D  F Y Y FFRQ+++    RG FQKS+V++S+YPYV LF ++  ++GP YF  G  +LEA       W  P PG+   LPFLG  +  ++   + P
Sbjct:  276 AFPDSNSFDVGDTVFNFRIRCSQSGLVSSGPTADAGFLYGYVFFRQKKDPRIRRGYFQKSLVILSQYPYVGLFSKMASILGPAYFDVGKPMLEAACHDIASWKPPAPGNHFDLPFLGNVIQVELSQPNKP 405
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A8C3NIH6_GEOPR (DENN domain containing 6A n=6 Tax=Neognathae TaxID=8825 RepID=A0A8C3NIH6_GEOPR)

HSP 1 Score: 104 bits (259), Expect = 1.740e-19
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQ-------------TFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASKYRYHR 432
            L+ PD N+  +GD  +CFR R+S    +     LDQ              + Y Y +FRQ R++   RG FQKS+V++S+ PYV+LF  ++K I P YF    A LEAV S  + WPAP PG +  LP +G  +  ++P     P  +     H+
Sbjct:  119 LSFPDSNSGCLGDTQFCFRFRRSPGRKVSFCCFLDQLDRDLPVYLKKDSAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYVHLFRTMLKQIAPEYFEKSEAFLEAVCSDIDRWPAPVPGEVLQLPLMGVIMKLRIPTYRDKPGTSIVQNMHQ 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A8C3RIH9_9PASS (DENN domain containing 6A n=4 Tax=Passeriformes TaxID=9126 RepID=A0A8C3RIH9_9PASS)

HSP 1 Score: 103 bits (258), Expect = 1.850e-19
Identity = 54/139 (38.85%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQ-------------TFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVP 384
            L+ PD N+  +GD  +CFR R+S    +     LDQ              + Y Y +FRQ R++   RG FQKS+V++S+ PYV+LF  ++K I P YF    A LEAV S  + WP P PG +  LP +G T+  ++P
Sbjct:   83 LSFPDSNSGCLGDTQFCFRFRRSPGRTVSLCCFLDQMDRDLPVYLKKDSAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYVHLFRTMLKQIAPEYFEKSEAFLEAVCSDIDRWPPPVPGKVLQLPVMGVTMKLRIP 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A091KQU3_9GRUI (Protein DENND6A (Fragment) n=2 Tax=Chlamydotis macqueenii TaxID=187382 RepID=A0A091KQU3_9GRUI)

HSP 1 Score: 101 bits (251), Expect = 2.550e-19
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQ-------------TFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVP 384
            L+ PD N+  +GD  +CFR R+S    +     LDQ              + Y Y +FRQ R++   RG FQKS+V++S+ PYV+LF  ++K I P YF    A LEAV S  + WP P PG +  LP +G  +  ++P
Sbjct:   20 LSFPDSNSGCLGDTQFCFRFRRSPGRKVSLCCFLDQLDRDLPVYLKKDPAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYVHLFRTMLKQIAPEYFEKSDAFLEAVCSDVDRWPPPIPGKILHLPIMGIIMKLRIP 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Match: A0A6P7YCA8_9AMPH (protein DENND6A isoform X1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7YCA8_9AMPH)

HSP 1 Score: 103 bits (257), Expect = 2.700e-19
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 1 
Query:    7 LAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQ-------------TFEYCYAFFRQERNEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSSFEDWPAPCPGSLCPLPFLGETVMFQVP 384
            L+ PD N   +GD  +CFR R+S    +    L+DQ              + Y Y +FRQ R++   RG FQKS+V++S+ PY+  F+ ++K I P YF      LEA  S  + WPAPCPG++  LP +G  +  ++P
Sbjct:   83 LSFPDSNAGCLGDTQFCFRFRQSSGRKVSLHCLMDQFDKDLPVYLKKDPAYYYGYVYFRQVRDKTLKRGYFQKSLVMISKLPYIKFFQTVLKKIAPEYFEKSDPCLEAACSDIDRWPAPCPGTMLNLPIMGVVIKVRIP 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13221.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGC5_9PHAE0.000e+079.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNB6_ECTSI4.530e-31371.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9L9_9STRA2.010e-5269.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0004F099E34.720e-2038.85protein DENND6A n=1 Tax=Merops nubicus TaxID=57421... [more]
A0A261Y7Q1_9FUNG5.580e-2038.52UDENN domain-containing protein n=1 Tax=Bifiguratu... [more]
A0A015K202_RHIIW8.250e-2039.23UDENN domain-containing protein n=7 Tax=Rhizophagu... [more]
A0A8C3NIH6_GEOPR1.740e-1936.13DENN domain containing 6A n=6 Tax=Neognathae TaxID... [more]
A0A8C3RIH9_9PASS1.850e-1938.85DENN domain containing 6A n=4 Tax=Passeriformes Ta... [more]
A0A091KQU3_9GRUI2.550e-1938.13Protein DENND6A (Fragment) n=2 Tax=Chlamydotis mac... [more]
A0A6P7YCA8_9AMPH2.700e-1936.69protein DENND6A isoform X1 n=5 Tax=Gymnophiona Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13221contigEcto-sp13_S_contig13221:2..4789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score919.1
Seed ortholog evalue1.3e-264
Seed eggNOG ortholog2880.D7FNB6
Model size2244
KEGG koko:K17654
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2432@1,KOG2432@2759
Cds size2241
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13221.2604.1prot_Ecto-sp13_S_contig13221.2604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13221 5..4789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.5075903-UTR-Ecto-sp13_S_contig13221:1..41681462707.5075903-UTR-Ecto-sp13_S_contig13221:1..4Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13221 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.5230823-CDS-Ecto-sp13_S_contig13221:4..631681462707.5230823-CDS-Ecto-sp13_S_contig13221:4..63Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13221 5..63 +
1681462707.539358-CDS-Ecto-sp13_S_contig13221:605..7021681462707.539358-CDS-Ecto-sp13_S_contig13221:605..702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13221 606..702 +
1681462707.5490627-CDS-Ecto-sp13_S_contig13221:1558..16421681462707.5490627-CDS-Ecto-sp13_S_contig13221:1558..1642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13221 1559..1642 +
1681462707.5590398-CDS-Ecto-sp13_S_contig13221:1974..28921681462707.5590398-CDS-Ecto-sp13_S_contig13221:1974..2892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13221 1975..2892 +
1681462707.5690596-CDS-Ecto-sp13_S_contig13221:3706..47891681462707.5690596-CDS-Ecto-sp13_S_contig13221:3706..4789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13221 3707..4789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13221.2604.1

>prot_Ecto-sp13_S_contig13221.2604.1 ID=prot_Ecto-sp13_S_contig13221.2604.1|Name=mRNA_Ecto-sp13_S_contig13221.2604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=747bp
MLAMPDCNTTQIGDCFYCFRTRKSHRMPLMSSSLLDQTFEYCYAFFRQER
NEECARGMFQKSVVVVSRYPYVNLFERLVKVIGPLYFTHGSAVLEAVFSS
FEDWPAPCPGSLCPLPFLGETVMFQVPDIDMPPQVASKYRYHRGVHLCAS
WSRARVVSLTRTLSGCGSISSGFPISGGSPGSCRKGVGPSPLEGPEGSGA
EQEQEEEEQHPVSRRGSTGVGEDSAGAGAPAGGDGGVKDPPPMSGGGPPR
SGDPASTNGGASSCLQGAGRRPSAGAALEDDGAPASSPPHWKSNCGTRTG
ESNGEEGCGAVHARRTPSPGGGEGGGAFWNGPCGSPGGLTSPGFRLSARE
ALGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPIL
TLDGRAGSNLAQSCYYVADQDSEEDEEDEDMGERFVLEEEGWQGARWLEN
GGGDQIAVGEAAAGREDAGEGRGDGRDAGVREGEGSAGETMLDNGQQSEV
AAPAGLPVAGDRSDAPTHAAATGDQPETVTGVDGSVNVSGRAPAAATTAA
AAAAAAMDAATAAAATAAAAAAAATHAAVRQARLTDQPAAAASAATATAA
AAPSRASSASVSAAPLTTNPGASSSRGRATSLSPPRSAAPHSLSAVKPSK
TPNPRSTGAWSALRAWADTAPEDPWDVPAPLELPAALARRESTTTAAAAA
VAESICREGRGGGGSGQETLLTLPGRVKAEGGGAEAKTLSRSVPAAA
back to top

mRNA from alignment at Ecto-sp13_S_contig13221:2..4789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13221.2604.1 ID=mRNA_Ecto-sp13_S_contig13221.2604.1|Name=mRNA_Ecto-sp13_S_contig13221.2604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13221:2..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGATGCTGGCAATGCCCGACTGCAACACCACGCAGATAGGGGATTGCTT
CTACTGCTTCAGGTAGGCAAAGGGGCAGACAGCGTGTCGCGTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCCCTCTCTCTTCCCCTCTCTCTCTCTCTTCCCCCCTTGTTCAAA
AACTGCTGCTACTATACGTTGTGTAGTAAGCCGTAAGGCCTACGACGAAG
CATTGTAGCCCGAACATGGGAGGCCGTATGGGTGACGGCGTAGGCGGCGG
TTGAGCACTGCGTTGACGCTCACGCGTCCCCGCGCCCGCGCATGTCTTAA
ATGTCAAGCTGTTTGGCTCTGTAGATCGACACTGAGTATAGTAGCGCCAG
TTTGACACCACATGCCAAGCAACAACCACCATCGCAAATCGCAGTACTAT
CCCGTCTCGGACACCATGTATGCATGCCTTGGGTTGTCTCATGCTGGGGT
ACCGTGGTAATGTCGACGGAACGGTCGACGGAACGGTCTACGGAATGGTC
CCCTGATCTTTCGTCGCTCTTCTCCGCTCCCTCCTGCCGCCGCCGCCGCC
GCAGGACGCGAAAGTCCCACAGGATGCCTTTGATGAGCTCCTCTCTGCTG
GACCAGACGTTCGAGTACTGCTACGCGTTCTTCAGGCAGGAGCGAAACGA
GGTATGTACAGGCCTACGGTCGTGGCGGTTAGGTTATTCACAGAGAGAGA
GCGTGAGCTGGTAGGTCGCTTTCGTGAGGGTTAAAGGTTAGAAGCAGGTG
GGTGAGGGTTCTACGGGCGAGGAGGCAGACCGCTGAGGCGATTTTGCGGA
CTGTTAGCGACTTCGTGCAAAGCGGTGGTCATCTGACGCCTCGAGTACAT
ATGTCGAACACGCGTACTTCTTTCAAGACCACGACATGAGCCGTGCTCGC
TTCTGGTACCTCACGTCTGTGAACAAGCGCGTTGTTGCGCATACCTTGGC
TTCTGTTGTGATCTTGCGCCAGACAGACAAGCAGTCACAACACCCCCAGG
TTGAGATGGTGTTCCAGTTACCTCAAGTAATCATGAATTCCCTTCGGTCT
TTGCTGCAGGGAAGACCGGCTGGCCCAGTATTTGCTGGGGAAGTTTCGCG
GTGGACAGATGCTCACATGGCTGATATCCATCGTGTACCATGAAACGGGT
TGATGTTGAATTGCGCGTCGCCCCTTGTGTCCTGTCAGAAAGACGATCGC
AAATTAATCATGGTCTGCTGCGTCAAGAGTATACGGTACCTTCGTTTGTC
TCAAGGGTCGATCTATTCTCTCTCCCTTGTACACGGGCGAATGGCGCGCG
ATTTACCCTTACCGCTCAATTCTGAACGTTCATGTAACTTTGGTGCTGTA
GGCTGTTGTTGCCTTTTGTCAGTTGACTTGTTGACCGCTATGTTCTCCCT
CCCTCCCTCTCTCCGTGGAAGAAAGCGCCCGTGGCATATTCGAGAAGTCG
GTTGACTTGTTGACCGCTATGTTCCTCCTCCCTCCCTCCCTCCCTCTCTT
CGTGCAGGAGTGTGCCCGTGGCATGTTCCAGAAGTCAGTCGTCGTCGTGA
GCCGCTATCCTTACGTCAACCTATTCGAACGCCTGGTGAAGGTGAGGTTT
CTTCTTCTTGTTTGGTCGGTCCAAATAAACTCCCCGTGTACATATGCATA
CCTCATCGGAAGCGTTTCGTTTACCAGTGTGTGTTTGTGTTGTGTTGTGG
TTTCGTCCTTGCATTGCTTGTTTTCCGAGTGTCAGGGGGGCATGCCCCAC
CCGGTTGTCTCGAAAGTTCGTTTCATGAATATGTAGACGGGGCCATGCCC
CACCCGGTTGTCTCGAAAGTTCGTTTCATGAATATGTAGACGGGGTCAGT
CATCTTCGGCGACAACCATAGTCCGTCTATTCGCGTGCATCTCATTCATG
CGCCCCATCAATGCGTCCTCCAGGTGATCGGGCCGCTTTACTTTACTCAC
GGATCGGCAGTCCTGGAGGCTGTGTTTTCGTCTTTCGAAGACTGGCCCGC
GCCCTGCCCGGGCTCCCTATGCCCCCTGCCGTTCCTAGGGGAGACCGTCA
TGTTCCAGGTCCCCGACATCGACATGCCTCCACAGGTGGCCTCCAAGTAC
AGGTACCACCGCGGGGTTCACCTCTGTGCCTCCTGGTCTAGAGCTCGAGT
GGTGAGCTTGACGCGCACCCTCAGCGGCTGCGGCAGCATCAGCTCCGGCT
TCCCGATTTCCGGCGGCAGCCCGGGCTCTTGCCGCAAGGGCGTTGGGCCG
TCACCTTTGGAAGGCCCCGAAGGCAGTGGCGCGGAGCAGGAGCAGGAGGA
GGAGGAGCAGCATCCCGTTAGCCGACGAGGGAGCACCGGAGTTGGCGAAG
ACTCTGCCGGCGCCGGCGCCCCCGCGGGTGGCGATGGCGGCGTCAAAGAT
CCCCCCCCCATGTCAGGCGGCGGCCCGCCTCGAAGCGGCGACCCCGCGAG
CACGAACGGCGGTGCGAGCAGTTGTTTGCAGGGCGCGGGAAGGCGACCAT
CCGCCGGTGCCGCGCTCGAGGACGACGGCGCCCCCGCCTCCTCCCCCCCC
CACTGGAAGAGCAACTGCGGAACCCGCACGGGCGAGAGTAATGGCGAGGA
GGGTTGCGGGGCGGTCCATGCTAGGCGGACGCCGTCTCCGGGGGGGGGCG
AGGGCGGGGGGGCGTTTTGGAACGGACCGTGTGGTAGCCCGGGGGGGCTC
ACGTCTCCCGGATTCCGGCTTTCGGCGAGGGAGGCGCTCGGGGAAGGGGG
CCTGCCGCCGGGAATGCGGGCGGGGGGGCACGGGAGATCGTCTTTTGGCG
CCGGCTCGATGGCTTCCGTGATTTGCGAAAGTCCGTCGGAGGTGAGGGGA
AAGTTTTGCCCAGGTTGGGGGGAGATACGTCGGCCGAACGGAGCAGTATT
CCTTGCTGAGAGTTGGGCAAGGGAGCGGCGCTGCCTGTTTGTGCAGTGTT
TTGAGCGTCTGGGGGGTGATTGTGGAAATCCTGGTCCGTTTTGCTGGTTC
AGCGGCGGACGAAACATTGCATGCAGCAGTCGGCTCCTTCGGTCTCTCAC
GTTGTGAAGCTCTTCTACGTTTTGATGGGGGGGTGTAACGATGCGCTTTT
CCTGCTGTGGTGTATCCGTCCGCTGGCTCTGGACGGTCGACGGTTAGGTC
CTTCTGATGTCTCGAACCCACACGAGGACAGCAGTGCTTGCTCGAGGTCG
ACTTGCGTTGTAATATGTGAAGACGCGGCTTTCCGTGCTCCAGCGATAGA
CACGATCGATAGCGGGAAAGAAGTGTGGCGCCCCTGGTTGGGGTTTGAGC
CGCAATAGATTCACACGGGAAGGAAGATGGCTCTTCTCTTATTGCGCGAG
ACCCAGATCGAACAGGTGGACACCTTATGTTGTGCATTTATGAACAGCAG
TGCGGTGTGCAGGAAGCACCAAAGGGCACAAGGACACTCACTCACTTGGA
AGCTTTGCTATTGGTCGAACACATCATGCGTGTCAGTCCTGGACTACTGT
AGGTAGCAGAACACGATCAGTAGCTGTGGAAGACTTCGAAACTGCGGACA
ATCATTGCCCCACGGAGAACAGCCTTCCAAACAGGTGCGCGACTGACGGC
TTACGACCCGCTATCCCGTCGCGCTCTTCGTACGCGTACCGTGTACCGTT
AACAGAACTGGTTGGCCACACCGCGAAGCGGAAGCACGCCGATCTTGACT
CTGGATGGCAGGGCCGGGTCGAACCTTGCGCAGAGTTGCTACTACGTTGC
CGACCAGGATAGCGAGGAGGACGAAGAGGACGAAGACATGGGCGAACGCT
TCGTGCTGGAGGAGGAAGGCTGGCAGGGAGCGCGGTGGCTGGAGAACGGT
GGGGGCGATCAAATCGCCGTCGGAGAGGCCGCGGCGGGGCGGGAGGACGC
GGGGGAGGGCAGGGGCGACGGGCGGGATGCCGGAGTGCGAGAAGGGGAGG
GTAGTGCCGGCGAAACGATGCTGGACAATGGACAGCAATCAGAGGTGGCG
GCCCCGGCGGGCTTGCCGGTAGCAGGGGACCGGTCAGATGCCCCGACGCA
CGCAGCAGCTACTGGCGACCAGCCAGAGACGGTCACAGGTGTTGATGGCA
GCGTCAACGTGAGTGGTCGTGCACCCGCAGCGGCAACTACTGCCGCCGCC
GCCGCCGCCGCTGCTATGGATGCTGCAACCGCTGCTGCGGCAACTGCCGC
CGCCGCTGCCGCCGCCGCCACTCATGCCGCCGTGAGACAGGCTCGCCTGA
CCGACCAACCTGCTGCTGCTGCTTCTGCTGCTACTGCTACTGCTGCTGCT
GCTCCGTCTCGAGCATCTTCCGCCTCAGTATCAGCAGCTCCGCTTACGAC
GAATCCCGGTGCCTCTTCCTCCAGGGGTCGCGCCACGAGCCTATCACCAC
CACGATCCGCCGCTCCCCACAGCCTCTCGGCCGTGAAGCCGAGCAAGACA
CCGAACCCCAGGTCCACGGGCGCCTGGTCCGCCCTCCGCGCCTGGGCGGA
TACCGCGCCGGAAGACCCGTGGGACGTCCCGGCACCTCTAGAGCTGCCCG
CGGCGCTCGCGAGGAGGGAGTCGACGACGACGGCGGCGGCTGCAGCCGTC
GCGGAGTCGATATGTCGTGAAGGTAGAGGTGGCGGCGGTAGCGGCCAGGA
GACTTTGTTGACGTTGCCCGGTAGGGTTAAAGCGGAGGGCGGCGGCGCGG
AAGCGAAGACGCTCTCGAGGTCGGTGCCGGCGGCGGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13221:2..4789+

>mRNA_Ecto-sp13_S_contig13221.2604.1 ID=mRNA_Ecto-sp13_S_contig13221.2604.1|Name=mRNA_Ecto-sp13_S_contig13221.2604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2241bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13221:2..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCAATGCCCGACTGCAACACCACGCAGATAGGGGATTGCTTCTA
CTGCTTCAGGACGCGAAAGTCCCACAGGATGCCTTTGATGAGCTCCTCTC
TGCTGGACCAGACGTTCGAGTACTGCTACGCGTTCTTCAGGCAGGAGCGA
AACGAGGAGTGTGCCCGTGGCATGTTCCAGAAGTCAGTCGTCGTCGTGAG
CCGCTATCCTTACGTCAACCTATTCGAACGCCTGGTGAAGGTGATCGGGC
CGCTTTACTTTACTCACGGATCGGCAGTCCTGGAGGCTGTGTTTTCGTCT
TTCGAAGACTGGCCCGCGCCCTGCCCGGGCTCCCTATGCCCCCTGCCGTT
CCTAGGGGAGACCGTCATGTTCCAGGTCCCCGACATCGACATGCCTCCAC
AGGTGGCCTCCAAGTACAGGTACCACCGCGGGGTTCACCTCTGTGCCTCC
TGGTCTAGAGCTCGAGTGGTGAGCTTGACGCGCACCCTCAGCGGCTGCGG
CAGCATCAGCTCCGGCTTCCCGATTTCCGGCGGCAGCCCGGGCTCTTGCC
GCAAGGGCGTTGGGCCGTCACCTTTGGAAGGCCCCGAAGGCAGTGGCGCG
GAGCAGGAGCAGGAGGAGGAGGAGCAGCATCCCGTTAGCCGACGAGGGAG
CACCGGAGTTGGCGAAGACTCTGCCGGCGCCGGCGCCCCCGCGGGTGGCG
ATGGCGGCGTCAAAGATCCCCCCCCCATGTCAGGCGGCGGCCCGCCTCGA
AGCGGCGACCCCGCGAGCACGAACGGCGGTGCGAGCAGTTGTTTGCAGGG
CGCGGGAAGGCGACCATCCGCCGGTGCCGCGCTCGAGGACGACGGCGCCC
CCGCCTCCTCCCCCCCCCACTGGAAGAGCAACTGCGGAACCCGCACGGGC
GAGAGTAATGGCGAGGAGGGTTGCGGGGCGGTCCATGCTAGGCGGACGCC
GTCTCCGGGGGGGGGCGAGGGCGGGGGGGCGTTTTGGAACGGACCGTGTG
GTAGCCCGGGGGGGCTCACGTCTCCCGGATTCCGGCTTTCGGCGAGGGAG
GCGCTCGGGGAAGGGGGCCTGCCGCCGGGAATGCGGGCGGGGGGGCACGG
GAGATCGTCTTTTGGCGCCGGCTCGATGGCTTCCGTGATTTGCGAAAGTC
CGTCGGAGAACTGGTTGGCCACACCGCGAAGCGGAAGCACGCCGATCTTG
ACTCTGGATGGCAGGGCCGGGTCGAACCTTGCGCAGAGTTGCTACTACGT
TGCCGACCAGGATAGCGAGGAGGACGAAGAGGACGAAGACATGGGCGAAC
GCTTCGTGCTGGAGGAGGAAGGCTGGCAGGGAGCGCGGTGGCTGGAGAAC
GGTGGGGGCGATCAAATCGCCGTCGGAGAGGCCGCGGCGGGGCGGGAGGA
CGCGGGGGAGGGCAGGGGCGACGGGCGGGATGCCGGAGTGCGAGAAGGGG
AGGGTAGTGCCGGCGAAACGATGCTGGACAATGGACAGCAATCAGAGGTG
GCGGCCCCGGCGGGCTTGCCGGTAGCAGGGGACCGGTCAGATGCCCCGAC
GCACGCAGCAGCTACTGGCGACCAGCCAGAGACGGTCACAGGTGTTGATG
GCAGCGTCAACGTGAGTGGTCGTGCACCCGCAGCGGCAACTACTGCCGCC
GCCGCCGCCGCCGCTGCTATGGATGCTGCAACCGCTGCTGCGGCAACTGC
CGCCGCCGCTGCCGCCGCCGCCACTCATGCCGCCGTGAGACAGGCTCGCC
TGACCGACCAACCTGCTGCTGCTGCTTCTGCTGCTACTGCTACTGCTGCT
GCTGCTCCGTCTCGAGCATCTTCCGCCTCAGTATCAGCAGCTCCGCTTAC
GACGAATCCCGGTGCCTCTTCCTCCAGGGGTCGCGCCACGAGCCTATCAC
CACCACGATCCGCCGCTCCCCACAGCCTCTCGGCCGTGAAGCCGAGCAAG
ACACCGAACCCCAGGTCCACGGGCGCCTGGTCCGCCCTCCGCGCCTGGGC
GGATACCGCGCCGGAAGACCCGTGGGACGTCCCGGCACCTCTAGAGCTGC
CCGCGGCGCTCGCGAGGAGGGAGTCGACGACGACGGCGGCGGCTGCAGCC
GTCGCGGAGTCGATATGTCGTGAAGGTAGAGGTGGCGGCGGTAGCGGCCA
GGAGACTTTGTTGACGTTGCCCGGTAGGGTTAAAGCGGAGGGCGGCGGCG
CGGAAGCGAAGACGCTCTCGAGGTCGGTGCCGGCGGCGGCA
back to top