mRNA_Ecto-sp13_S_contig13211.2600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13211.2600.1
Unique NamemRNA_Ecto-sp13_S_contig13211.2600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 1.200e-74
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:    7 LVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALYRRVRDKEIAILKREHSLATEDASRHSLRVAASSEPL 378
            LVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFY GPEDEKYLYEDTLDWD+NRLQACLSGGVAVGVLVPIAGLLHLG+FRLREALYRRVRDKEIA LKREHSLATE ASRHSLRVAASS PL
Sbjct:  148 LVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHSLATEGASRHSLRVAASSVPL 271
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.920e-55
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    7 LVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALYRRVRDKEIAIL 303
            LVDQLLIADT+KLGHMIFTQIYGLVYLAFSV+WFYKGPEDEKYLYEDTLDW +NRLQACLSGGVAVGVLVPIAGLLHL +FRLREALY RVRDK+I  +
Sbjct:   66 LVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGRVRDKDIGYI 164
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.060e-20
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    7 LVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALY 270
            L+DQ L+AD +KL +++F Q +G++YL F+V W+Y  P+D++ +Y   LDW+ N L AC+    A+ V  P+ GL+HLGLFRLRE++Y
Sbjct:   46 LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.050e-18
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 IQLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALY 270
            I L+DQ L+AD +KL +++F Q +G++Y+ F+V W+Y  P+D++ +Y   LDW+ N L AC+    A+ V  P+ GL+H G+FRLRE +Y
Sbjct:  169 IMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVY 257
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-11
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 VDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALY 270
            +DQLL+A  ++   M+ + ++ +VY+AF++V+F   PEDE+ +Y   +DW ++   +     V   VLVP+ GL+H  +FRLRE +Y
Sbjct:  169 IDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQ-MDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIY 254
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BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.780e-11
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 IQLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALY 270
            I  +DQLL+A  ++   M+ +  + +VY+AF++++F   PEDE+ +Y   +DW ++   +     V   VLVP+ GL+H  +FRLRE +Y
Sbjct:   77 IMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQ-MDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIY 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13211.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JVA0_9PHAE1.200e-7495.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX10_ECTSI2.920e-5588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G734_ECTSI3.060e-2047.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSI9_9PHAE4.050e-1844.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMZ5_9PHAE3.080e-1137.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G735_ECTSI3.780e-1136.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13211contigEcto-sp13_S_contig13211:47..1829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size381
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003880.1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.2473001-CDS-Ecto-sp13_S_contig13211:46..1121681462707.2473001-CDS-Ecto-sp13_S_contig13211:46..112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13211 47..112 +
1681462707.265839-CDS-Ecto-sp13_S_contig13211:902..10871681462707.265839-CDS-Ecto-sp13_S_contig13211:902..1087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13211 903..1087 +
1681462707.274844-CDS-Ecto-sp13_S_contig13211:1699..18291681462707.274844-CDS-Ecto-sp13_S_contig13211:1699..1829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13211 1700..1829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13211.2600.1prot_Ecto-sp13_S_contig13211.2600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13211 47..1829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13211.2600.1

>prot_Ecto-sp13_S_contig13211.2600.1 ID=prot_Ecto-sp13_S_contig13211.2600.1|Name=mRNA_Ecto-sp13_S_contig13211.2600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
IQLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDT
LDWDQNRLQACLSGGVAVGVLVPIAGLLHLGLFRLREALYRRVRDKEIAI
LKREHSLATEDASRHSLRVAASSEPL*
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mRNA from alignment at Ecto-sp13_S_contig13211:47..1829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13211.2600.1 ID=mRNA_Ecto-sp13_S_contig13211.2600.1|Name=mRNA_Ecto-sp13_S_contig13211.2600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13211:47..1829+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGCTCGTGGACCAGCTGCTCATAGCAGACACCTACAAGCTGGGGCA
CATGATCTTCACCCAGGTGAGAAAATAGTACTACCTTCAACAAACTCGAC
CGAAACAAAATGGGAGAAGCGGTTGTAACTGTCATGATTGGCTAGTCCCA
CCTCGCTAATCAGAGAACACCATGGCTCTCCTAAAATGCCCCCCCAACAA
CAAACCAAAAGGAGTGTACCGAGCGCGAGATTTCGCTTTTTCGCTAGGCG
GGGGAGGAACGAGATAACCCCGTCAAACATCTACAGCTTCTCCGTGGGGA
ATGTTGTCTAGTTAAACTGTGCCTCGCCGCTGGATGATACAAACGTACAC
ACCGATGCGAAGGTCAAGACCGTTTTGCAAGTCGAAAGATGTTTCGTTCT
CTCATCTGTGTCTCGCAAAGGTTCTTGCTCCTACGAGCCTGATGTGAAGA
CCTCGGGTTGTGGAAAGTCATCAGTGGAAAGCTGTATTTTTTGTCAATGT
TCCGGGGGGGGTGCTACTTGAGTTTTCGAAGCCCCCCACGGAAGGGTTTC
TCTCCCCGGTAGAACTCCCGCAAGATTTTCGAAAACATTTCCCCCGGGTG
TGCGTGCCAGTGCTTGATTGGCCTGTGGAGGGGTTCCCTCTTGTGACAAC
CCAGCTCCCGCCCGCGTAATCAATATTTGCCTGCGGTGGCCCCTCGTCCA
AGCGATCCTATCCACACGCGGCCCGTACACTCCCCTAGGTCTCTTGTTGG
TCTACTTCGCTTTCCTTTGCTACATGCGGCAGAATTTCGGGTACGCTCTT
AACCAATCGGAATCACTCCGCCGCCGCGCCTCCGCGCGTGGGCCTCTCTT
GCCCAGATCTACGGGCTGGTATACCTAGCCTTTTCTGTCGTTTGGTTCTA
CAAAGGCCCGGAAGATGAGAAGTACCTCTACGAGGACACACTCGATTGGG
ACCAGAACAGGCTGCAGGCCTGCCTGTCGGGAGGGGTCGCCGTAGGGGTC
CTCGTGCCGATCGCCGGACTGCTGCACCTGGGGTTGTTCAGGTGTGAGAC
CATCTGCTGTCACTGCGTGTAGGAGAAGGGGGGGGTGTCCGGTGGTTCTT
TTTCTTCGGTCTGCGTTCAGACATGCGTGTTGCAGGAGCTGCTGTCTCTC
CGTCCACACATACATGCCGCAGGTGGACATCTCGCGTTTGGTGTGCTTAC
CTGCCGTTGCGAAGGATTTTGATATTTCCGTGCGCCGCGTCCCCTTGTGC
GTATACAAACCAAGCATCATTGATGCATGTTACGCGGGATACTTCCGACA
GTTTCGAGAACGCCGCCTTCCACTACGTACATGAAACCAGCGTCAGAAGA
AGCAGGTGGTGCATGCAGGAAGCGTACTCGATCGCCCCTCTCTCTCTCTT
TATATGTCCCTCTCTTTGTGCCGGGGGCGAGAGAATCGTAAACCAGGCCG
ATACCTGCTGTCGAAGCGAACCCACCTATCAAAGAAGCATGCCACCTTTC
CTTCGTGCATGACGTGCGTGTGCCTCTCGCCGCTCGTATCGATTCATCGC
TCATCAAACTTGCCTCTAACTTCACCATCCGCGTCCGTTCGGACATACAC
GTTCATTGATGCACCGCCGATGGAAAAACCCGTGTCTCGAACAAAACGCG
CAGGCTGCGAGAAGCACTCTACCGGAGGGTTAGAGACAAGGAGATCGCTA
TCCTGAAACGAGAGCATTCGTTGGCCACGGAGGACGCTTCTCGCCATTCG
CTACGGGTAGCTGCAAGCAGCGAACCGCTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13211:47..1829+

>mRNA_Ecto-sp13_S_contig13211.2600.1 ID=mRNA_Ecto-sp13_S_contig13211.2600.1|Name=mRNA_Ecto-sp13_S_contig13211.2600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13211:47..1829+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGCTCGTGGACCAGCTGCTCATAGCAGACACCTACAAGCTGGGGCA
CATGATCTTCACCCAGATCTACGGGCTGGTATACCTAGCCTTTTCTGTCG
TTTGGTTCTACAAAGGCCCGGAAGATGAGAAGTACCTCTACGAGGACACA
CTCGATTGGGACCAGAACAGGCTGCAGGCCTGCCTGTCGGGAGGGGTCGC
CGTAGGGGTCCTCGTGCCGATCGCCGGACTGCTGCACCTGGGGTTGTTCA
GGCTGCGAGAAGCACTCTACCGGAGGGTTAGAGACAAGGAGATCGCTATC
CTGAAACGAGAGCATTCGTTGGCCACGGAGGACGCTTCTCGCCATTCGCT
ACGGGTAGCTGCAAGCAGCGAACCGCTCTGA
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