mRNA_Ecto-sp13_S_contig13209.2599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: D8LRC0_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC0_ECTSI) HSP 1 Score: 337 bits (865), Expect = 8.310e-113 Identity = 202/218 (92.66%), Postives = 204/218 (93.58%), Query Frame = 1
Query: 1 MSGNINISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKDAAXXXXXXXXXXXXXXXEEVSLNGDDSVKEKKEXXXXXXXXXXXENTSDDGETKATV 651
MSGNINISGTEPIDDPEYR +MPRVIGKVEGRGNGIKTVIFNV DLSLALKRDPGEVCKFFGTELGAQ TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK K XXXXXXXXXXXXXXXEEVSLNGDDS KEKK+XXXXXXXXXXXENTSDDGETK TV
Sbjct: 1 MSGNINISGTEPIDDPEYRYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQ----TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKSKXXXXXXXXXXXXXXXXXXXXEEVSLNGDDSAKEKKDXXXXXXXXXXXENTSDDGETKTTV 214
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A7S3DU57_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU57_9STRA) HSP 1 Score: 213 bits (543), Expect = 5.280e-67 Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKD 480
INI+G P+DDPEYR +MP V GK+EG GNGIKTV+ N+TD+ +L R PGEV KFFGTELGAQ+ RY+ E +RAIVNGAHT+A LQ L++KYVE FVLCPNC LPE++YKIK+ I+HKC ACGAKEMVDMSH+LC YI+ KKAKK K K+
Sbjct: 9 INIAGLTPVDDPEYRYKMPAVYGKIEGSGNGIKTVVPNITDVGTSLHRAPGEVNKFFGTELGAQS----RYSAETDRAIVNGAHTDAVLQDLINKYVEKFVLCPNCGLPETEYKIKSEVIYHKCAACGAKEMVDMSHRLCNYILAEDKKAKKDKGKN 161
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A7S1D9Q5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9Q5_CYCTE) HSP 1 Score: 219 bits (559), Expect = 1.140e-66 Identity = 107/158 (67.72%), Postives = 129/158 (81.65%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-GKDKD 480
INI+GT P+DDPEYR +MP V GK+EGRGNGIKTVI N++D+ L+L R+ GEV KFFGTELGAQ T YN + +RA+VNGAHT+ TLQ L+H+Y+E FVLCPNC LPE++YKIKN I+HKC ACG+K+MVDMSHKLCTYI+ KKAKK K KD
Sbjct: 9 INIAGTNPVDDPEYRYKMPAVYGKIEGRGNGIKTVIPNISDVGLSLHREAGEVTKFFGTELGAQ----TTYNPDTDRAVVNGAHTDDTLQDLMHRYIEKFVLCPNCSLPETEYKIKNDCIYHKCAACGSKDMVDMSHKLCTYILAQDKKAKKEAKSKD 162
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: B7G289_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G289_PHATC) HSP 1 Score: 219 bits (557), Expect = 2.520e-66 Identity = 107/156 (68.59%), Postives = 125/156 (80.13%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDK 477
INISG P+DDPEYR +MP V GK+EG GNGIKTVI N+T+++L+L R PGEV KFFGTELGAQ TRY+ E +RA+VNGAH +A LQ L+H+Y+E FVLCPNC LPE+ YKIKN AI+HKC ACGAKEMVDMSHKLC YI+ KKAKK K
Sbjct: 9 INISGASPVDDPEYRYKMPAVFGKIEGSGNGIKTVIPNITEVALSLHRQPGEVNKFFGTELGAQ----TRYSAETDRAVVNGAHMDAVLQDLMHRYIERFVLCPNCNLPETDYKIKNDAIWHKCAACGAKEMVDMSHKLCNYILAEDKKAKKDSKK 160
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: B8BW00_THAPS (W2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW00_THAPS) HSP 1 Score: 218 bits (556), Expect = 2.810e-66 Identity = 104/151 (68.87%), Postives = 125/151 (82.78%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAK 462
+NISGT P+DDPEYR +MP V GK+EG+GNGIKTVI N++D+ L+L RD GEV KFFG ELGAQ T YN E +RA+VNGAHT+ LQQ+VHKY+ELFVLCPNCRLPE++YKIK+G I+HKC ACG K+ VDM+HKLCTYI+ KKAK
Sbjct: 8 VNISGTTPVDDPEYRYKMPTVYGKIEGKGNGIKTVIPNISDVGLSLHRDAGEVNKFFGCELGAQ----TTYNTETDRAVVNGAHTDQVLQQMVHKYIELFVLCPNCRLPETEYKIKSGMIYHKCAACGNKDAVDMTHKLCTYILAQDKKAK 154
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A7S2KDW7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KDW7_9STRA) HSP 1 Score: 217 bits (553), Expect = 5.750e-66 Identity = 106/151 (70.20%), Postives = 124/151 (82.12%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAK 462
INISGT P+DDPEYR +MP+V+GK+EGRGNG KTVI N+++L+L+L RDPGEV KFFGTELGAQ T Y++E RA+VNG HT+A LQQ VHKYVE FV+CPNC LPE+ YKIK+G I HKC ACGAKEMVDMSHKL YI+ KKAK
Sbjct: 7 INISGTSPVDDPEYRYKMPKVVGKLEGRGNGSKTVIVNISELALSLHRDPGEVNKFFGTELGAQ----TTYSDETNRAVVNGHHTDAVLQQAVHKYVEAFVICPNCGLPETDYKIKSGVITHKCAACGAKEMVDMSHKLTNYILAQDKKAK 153
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A1Z5JLW0_FISSO (Translation initiation factor 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLW0_FISSO) HSP 1 Score: 216 bits (549), Expect = 2.760e-65 Identity = 103/156 (66.03%), Postives = 127/156 (81.41%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDK 477
INI+GT P+DDP YR +MP V GK+EG GNGIKTV+ NV D++ +L R+PGEV KFFGTE+GAQ+ RY+ + +RAIVNGAHT+ATLQ+L+H+Y+E FVLCP CRLPE+KYKIK+ I+H C ACGAK+MVDMSHKLC YI+ KKAKK K K
Sbjct: 9 INIAGTTPVDDPAYRYKMPAVFGKIEGSGNGIKTVLVNVLDVANSLHREPGEVSKFFGTEMGAQS----RYSADTDRAIVNGAHTDATLQELMHRYIEKFVLCPTCRLPETKYKIKSDTIYHSCAACGAKDMVDMSHKLCNYILAENKKAKKDKGK 160
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A7S3LEE8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEE8_9STRA) HSP 1 Score: 214 bits (546), Expect = 1.040e-64 Identity = 105/157 (66.88%), Postives = 127/157 (80.89%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-GKDK 477
IN++GT PIDDPEYR +MP V GK+EG GNGIKTVI N+TD+ +L R P EV KFFGTELGAQ TRY+ E +RAI+NGAHT+ATLQ+L+ +Y++ FVLCPNC LPE++YKIK+ +FHKC ACGAKEMVDMSHKLC +I+ KKAKK GK K
Sbjct: 9 INLAGTTPIDDPEYRYKMPAVFGKIEGSGNGIKTVIPNITDVGTSLHRSPAEVNKFFGTELGAQ----TRYSAETDRAIINGAHTDATLQELIKRYIDKFVLCPNCNLPETEYKIKSDTVFHKCMACGAKEMVDMSHKLCNFILAENKKAKKDGKGK 161
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A7S3V5E2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5E2_9STRA) HSP 1 Score: 212 bits (540), Expect = 7.590e-64 Identity = 102/155 (65.81%), Postives = 125/155 (80.65%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKD 474
INISGT P++DP YR +MP V+GK+EG+GNGIKTVI NV DL+L+L RDPGEV KFFG E+GAQ T YNE D+RA+VNGAH++ LQ VHKYVE FVLCPNC LPE++YKIK G I+H+C ACG+K+MVDM+HKLCTYI+ K+ K K+
Sbjct: 5 INISGTNPVEDPSYRYKMPSVMGKIEGKGNGIKTVIVNVYDLALSLHRDPGEVNKFFGCEMGAQ----TTYNETDDRAVVNGAHSDGELQGCVHKYVEKFVLCPNCGLPETEYKIKQGCIWHRCKACGSKDMVDMNHKLCTYILKKWKEDSKKKN 155
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Match: A0A6V2MCK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MCK3_9STRA) HSP 1 Score: 212 bits (540), Expect = 8.630e-64 Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 1
Query: 13 INISGTEPIDDPEYR-RMPRVIGKVEGRGNGIKTVIFNVTDLSLALKRDPGEVCKFFGTELGAQARRPTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-GKDKD 480
INISG P+DDPEYR +MP V GK+EGRGNGIKTVI N+++++L+L R PGEV KFFG ELGAQ T YN + +RA+VNGAHT++ LQ +VH+Y+E FVLCPNCRLPE+ YKIK+ I+HKC ACGAKEM++M HKLCTYI+ KKAKK K KD
Sbjct: 8 INISGATPVDDPEYRYKMPTVYGKIEGRGNGIKTVIPNISEVALSLHRPPGEVNKFFGCELGAQ----TTYNADTDRAVVNGAHTDSVLQNMVHRYIEGFVLCPNCRLPETDYKIKSDTIYHKCAACGAKEMLNMQHKLCTYILAQDKKAKKDAKSKD 161 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13209.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13209.2599.1 >prot_Ecto-sp13_S_contig13209.2599.1 ID=prot_Ecto-sp13_S_contig13209.2599.1|Name=mRNA_Ecto-sp13_S_contig13209.2599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp MSGNINISGTEPIDDPEYRRMPRVIGKVEGRGNGIKTVIFNVTDLSLALKback to top mRNA from alignment at Ecto-sp13_S_contig13209:1661..4395+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13209.2599.1 ID=mRNA_Ecto-sp13_S_contig13209.2599.1|Name=mRNA_Ecto-sp13_S_contig13209.2599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13209:1661..4395+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13209:1661..4395+ >mRNA_Ecto-sp13_S_contig13209.2599.1 ID=mRNA_Ecto-sp13_S_contig13209.2599.1|Name=mRNA_Ecto-sp13_S_contig13209.2599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13209:1661..4395+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |