mRNA_Ecto-sp13_S_contig13208.2598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13208.2598.1
Unique NamemRNA_Ecto-sp13_S_contig13208.2598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: D8LLM1_ECTSI (Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM1_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.350e-126
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 1
Query:    1 MPNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGRGADKALNRQLSQVST 558
            MPNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPP+ENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGG+GADKALNRQLSQ +T
Sbjct:    1 MPNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPAENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAAT 186          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A6H5JMA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA6_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.610e-122
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 1
Query:    1 MPNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGRGADKALNRQLSQVST 558
            MPNLRATKLYT+DQIRNSPSRKDGVSEALENDYRR TGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGG+GADKALNRQLSQ +T
Sbjct:   14 MPNLRATKLYTMDQIRNSPSRKDGVSEALENDYRRTTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAAT 199          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A6V1NFC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NFC1_HETAK)

HSP 1 Score: 147 bits (371), Expect = 1.760e-40
Identity = 86/184 (46.74%), Postives = 111/184 (60.33%), Query Frame = 1
Query:   10 LRATKLYTVDQI--RNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGRGADKALNRQLSQVS 555
            +  +  Y  D I  RNSPSRKDG+SE  E  YRRKT  FI  AG  L+LP   VATA VFFH+FF   SF++H+RF V +ACL LA KVEES K++E V +    V + G     +  +  K  +EKIL  ER +LHT+GF + +EHPY  ++ + KKL    KG  GG   D A  RQ +Q +
Sbjct:    1 MEGSSWYFSDDILRRNSPSRKDGISEEREKGYRRKTCFFIDEAGNSLKLPKLTVATAHVFFHRFFARQSFKQHDRFDVAAACLHLAGKVEESPKKLEVVAATCHAVRHRGAKTLEKESEESKIAKEKILTCERILLHTMGFDMCIEHPYKYLIEVCKKL--KNKGIIGGN-QDDAGGRQFAQTA 181          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A7S0PZF2_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZF2_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 9.320e-35
Identity = 67/159 (42.14%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   31 TVDQIRNSPSRKDGVSEA---------LENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKL 480
            T +QI NSPSRK  +S+A          E +YRR T  F++ +G++L LP   +ATA+VF+H+FF   S++ ++RF + + CLFLA+KVEE+ K+++ V+++++K+ N  +  P    + FK L+E+IL++ER +L TLGF LTVEHPY  +++ +K +
Sbjct:   24 TKEQIENSPSRKYLLSKANGDLEKAKHKETEYRRLTCAFLQESGQKLRLPQLTIATAIVFYHRFFAHKSYEGYDRFTIATTCLFLASKVEETPKKLKDVVTETYKIQNAPKAAPEPESQDFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSI 182          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A7S2H2I1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2I1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.080e-33
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   34 VDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSE-NEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMG 492
             D +R SPSR D +SE  E  YRR+T + ++ AG+ L+ P  A ATA VFFH+F+ LHSF+K +RF +   CLFLA KVEE  +++E ++    ++WN    P  + + + +++LRE +L  ER +LHT+ F L V+HPY  +  ++K L   G
Sbjct:    8 ADFLRQSPSRADDISEEGEKRYRRETVINMEKAGESLKFPRAAKATAQVFFHRFYALHSFKKFQRFDIAVTCLFLAGKVEEHPRKLETIIQCCHQIWNRLLQPTLKLDSEDYEKLRETMLRTERQLLHTMAFDLCVKHPYKDLFEIVKNLCQKG 161          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A1E7FTI4_9STRA (Cyclin-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTI4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.010e-32
Identity = 63/147 (42.86%), Postives = 96/147 (65.31%), Query Frame = 1
Query:   55 PSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGK 495
            PS   G+S   E   RRKT  FI+ AG+ L+LP  A++TA+VFFH+F+  H+FQ+H+RF V  A L LAAK EE+ K++  V+ + +K+            + F +L+E+IL+ ER +LHT+GF+L+++HPY   + ++KKL  M K
Sbjct:    1 PSITKGMSSIEEAMKRRKTCRFIEEAGRVLKLPRVAISTAMVFFHRFYAKHAFQEHDRFEVAVAALVLAAKTEEAPKKLNTVIQECYKLKARAMQAGHTKGEDFLKLKERILLLERIILHTIGFELSIDHPYKFFVDMIKKLIIMSK 147          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A7S0J0B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0B8_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 3.280e-32
Identity = 67/159 (42.14%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   31 TVDQIRNSPSRK-------DGVSEA--LENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKL 480
            T +QI +SPSRK       + V +A   E  YRR T  F++ +G++L LP   +ATA+VF+H+FF   S++   RF + + CLFLA+KVEE+ K+++ V+ +++K+ N  + PP  + + FK L+E+IL++ER +L TLGF LTVEHPY  +++ +K +
Sbjct:   26 TKEQIDSSPSRKYLLKKCGNDVEKAHNSETQYRRLTCAFLQESGQKLRLPQLTIATAIVFYHRFFAHKSYESFCRFTIATTCLFLASKVEETPKKLKDVVIETFKIQNTPKPPPEPDSQEFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSI 184          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A1Z5JU78_FISSO (Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU78_FISSO)

HSP 1 Score: 125 bits (313), Expect = 1.160e-31
Identity = 68/160 (42.50%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   28 YTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKV-WNGGR------DPPSENEKS--FKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKL 480
            + + Q+   PS +DG+S   E+  RRKT  FI+ +G+ L+LP  A+ATA+VFFH+F+  HSF +H+RF V  ACL LAAK EES K++  V+ +  K+ W G +       PP  + K   F +L+E++L+ ER +LHT+GF+L+++HPY  ++  +K+L
Sbjct:    6 FDISQL---PSLQDGMSIQEESMKRRKTCRFIEESGRILKLPRVAIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEESPKKLVVVLEECQKLKWRGMQAGSASVKPPDLDPKGEEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQL 162          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A7S2B1V0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1V0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.120e-30
Identity = 67/154 (43.51%), Postives = 96/154 (62.34%), Query Frame = 1
Query:   37 DQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWNGGRDPPSENEKS--FKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMG 492
            D +R SPSR D +SE  E   RR+T ++++ AG+ L+ P   +ATA VFFH+F+ L SF+K  RF +   CLFLA KVEE  +++E V+    ++WN   D P+ N  S  ++ LR  IL  ER +LHT+ F L V+HPY  ++  +KKL   G
Sbjct:    9 DFLRQSPSRADNISEEDEKRCRRRTAIYMEKAGEHLKFPRLTIATAQVFFHRFYALQSFKKFRRFDIAVTCLFLAGKVEEYPRKLESVIQMCHQIWNK-LDKPTLNPDSQDYEFLRLTILRTERQILHTIAFDLCVKHPYKDLIDTVKKLHQAG 161          
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Match: A0A7S4QWB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QWB2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.000e-29
Identity = 67/185 (36.22%), Postives = 104/185 (56.22%), Query Frame = 1
Query:    4 PNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELELPVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQVMSKSWKVWN--------------------GGRDPP------SENEKSFKRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKL 480
            P  R    +   Q+   PS + G++ A E D RR+T  FI+ AG+ L+LP  AVATA+V FH+F+  HSF +H+RF   +A L LAAK EES K++  V+ +  ++ N                     GR+ P          K F +L+++IL+ ER +LHT+GF+L+++HPY  ++  +KK+
Sbjct:    9 PPRRVPHAFDESQL---PSLRHGLTTAQERDKRRRTCRFIEEAGRVLKLPRVAVATAMVLFHRFYAKHSFTEHDRFEAAAAALLLAAKTEESPKKLTHVIQECHRLKNRGLQKQKEVMAGAAATAAAAAGRNSPVPIGYLDTKGKEFAKLKDRILLLERVILHTIGFELSIDHPYKFLVEQVKKM 190          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13208.2598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLM1_ECTSI1.350e-12697.85Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMA6_9PHAE2.610e-12297.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1NFC1_HETAK1.760e-4046.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0PZF2_9EUKA9.320e-3542.14Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]
A0A7S2H2I1_9STRA3.080e-3342.21Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1E7FTI4_9STRA2.010e-3242.86Cyclin-like protein (Fragment) n=1 Tax=Fragilariop... [more]
A0A7S0J0B8_9EUKA3.280e-3242.14Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A1Z5JU78_FISSO1.160e-3142.50Cyclin T n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
A0A7S2B1V0_9STRA4.120e-3043.51Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S4QWB2_9STRA2.000e-2936.22Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13208contigEcto-sp13_S_contig13208:347..2950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score124.8
Seed ortholog evalue4.3e-26
Seed eggNOG ortholog2850.Phatr5718
Model size558
KEGG koko:K15188
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.domain present in cyclins, TFIIB and Retinoblastoma
EggNOG OGs2XCGY@2836,COG5333@1,KOG0834@2759
Ec32 ortholog descriptionCyclin T
Ec32 orthologEc-04_005240.1
Cds size558
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.0734487-CDS-Ecto-sp13_S_contig13208:346..5201681462707.0734487-CDS-Ecto-sp13_S_contig13208:346..520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13208 347..520 -
1681462707.085964-CDS-Ecto-sp13_S_contig13208:1136..12471681462707.085964-CDS-Ecto-sp13_S_contig13208:1136..1247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13208 1137..1247 -
1681462707.1035843-CDS-Ecto-sp13_S_contig13208:1745..18691681462707.1035843-CDS-Ecto-sp13_S_contig13208:1745..1869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13208 1746..1869 -
1681462707.1182373-CDS-Ecto-sp13_S_contig13208:2801..29501681462707.1182373-CDS-Ecto-sp13_S_contig13208:2801..2950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13208 2802..2950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13208.2598.1prot_Ecto-sp13_S_contig13208.2598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13208 347..2950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13208.2598.1

>prot_Ecto-sp13_S_contig13208.2598.1 ID=prot_Ecto-sp13_S_contig13208.2598.1|Name=mRNA_Ecto-sp13_S_contig13208.2598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MPNLRATKLYTVDQIRNSPSRKDGVSEALENDYRRKTGLFIKAAGKELEL
PVDAVATALVFFHKFFMLHSFQKHERFFVGSACLFLAAKVEESSKRVEQV
MSKSWKVWNGGRDPPSENEKSFKRLREKILIAERCVLHTLGFQLTVEHPY
SVVMSLLKKLFTMGKGADGGRGADKALNRQLSQVST
back to top

mRNA from alignment at Ecto-sp13_S_contig13208:347..2950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13208.2598.1 ID=mRNA_Ecto-sp13_S_contig13208.2598.1|Name=mRNA_Ecto-sp13_S_contig13208.2598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2604bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13208:347..2950- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAACCTACGTGCTACGAAGCTGTATACGGTGGATCAGATACGGAA TTCTCCCTCCAGAAAAGACGGCGTTTCCGAGGCCTTGGAGAATGACTATC GGCGAAAGACGGGGCTCTTTATCAAGGCCGCAGGGAAGGAGCTTGAGCTG TGAGGATAGACTGGATAAGAGGCCTGTGCGTTTGCCTGCGGGTGTTGGTC AGAGTGTGGCCGCGGTTTTCCACCCATTGCATCAAGGGTAGGGGCGCGGG ATGTGCTTGCAAGCACAGCAGTTTACGTTTCGATTACGCGGAGATCCTAT GAAGAGACCGTTGGCGACGATCTACGAATTCGACCTGGCAGCCGTACAGT CATGTAATTGCTGCAGCAGTGTAGTACCTGTCTGTATTTCCGCTTGTTAT ACACAACAGTGGAGCGATGCGTGCATGTTATGCGAGAATCAGGAAAAAAC AAAGAATTCGATAATAACTACTGTTGGACTTGCGTCCACACAAATAGACG AAATCCCAAACTAGGGTGGAAGGTGGTGATGAGACAAAACCAACAAGACG CTGTCGAACCGGATCTCCACAGCACACAGCGGTTGGTTATCCATCTGCGT GTTCTCTCTTGCAATGATTGTCTGCTGGCCGGCAGATGATAATATGCCCG CATTTTCCGGTAGCCCCTCGGCGTTAACTGACAGTTACACGGACTTACAT TATTAAAAGCCGACTGTGAGCAGCGCTCCGGGTGTGCTGCTTGTGAGACG CATTTGTAGCAAGTTTCTTTTAGTAAGTGAGTTTGGATAGCGCTGTTTCG AAGCAGCCCTTGAGAGGTTGATTCTACGGTGGTGGTGGCGATGGGGTGGA GAGTATCTTTCTGTCGCCAGAGAAGGGAGAGAGTACCTTCGTTCACCCCC TGCCGCCGCTGCACCGCTTTGGACAGGCGGTTCTCGCCCATCTTCCCGGT GCTGAAGCCTCACAAAAACCAACAGCCCCGCCCTGCCTAGTTGCAACTAA CCGCTTTGATTGCCAACCCCTTGGCTTGTCTCTGTCTACGTGCGACGAAC GTTTCCGTGTTTGGGGGGGGGGGGGGGGCAGGCCGGTCGACGCGGTAGCG ACGGCGCTGGTCTTCTTCCACAAGTTCTTCATGCTGCACTCTTTCCAGAA ACACGAGCGCTTCTTCGTGGGATCGGCGTGCCTCTTCCTGGCCGCCAAGG TGGAGGTGCGTTCGTTCCGCAAGGGTTGGAGTTGCTGTTGGTGGTGGTGG TGGTGGCGGTATTGGTATTGTTGCCGCCATGCACATGGCGAATCAACTCC CACGTCGCAACAGATATGTACACCTCAACAACGTTTGTTCCGGTCCTCAT GACGGGGAGACGGTTTTGCCGTGGCCACAGCAGTCCATCAGCTCAAGCAT TGTGCAAACGGGACGACACTTTGGGAATTTTTCCCCCCACGACAGCCACT CACGCTGCTCAGCATGTGGCGCGTCTCCTGCTGTTCGGGCACGTACGGCC GAGCACGCGCACACAGCCAATTTTCTTGGTCGTGAACCACACGGTTGTTG ACGTGACGTGGAGCTTGATTCTCACATCTGCCCGTTGCACCACTTCGTCT TGTGTTCCCGAACCGCGAGAATTTGTTTCTCTCCCCACCGCTGTGGGCGT TTCTGATTGGCGGCTTTGGTTTCTGTGCGTGGTGCGCTTTGTCTGGTTTG TAGGAGAGCTCAAAACGAGTGGAGCAGGTGATGAGCAAGAGCTGGAAGGT CTGGAATGGCGGCAGAGATCCCCCCTCCGAAAACGAGAAGTCCTTCAAGA GACTGAGGGAGAAGGTGCGCCACTTTCTCTCTCTCTCTCTCTCTCTGCCG TTCGTTTTTTTTGTACTTTTCGTTGTTTTGTCTCGTTATCTGCGACTTGT GTTTAATTCCTCTGGTCCGTATTGCCCTGTCCTGTTGACTGCGTATCTCA CCGCCCGCGTTTTCGTCTCAAGATTTAGCTTCTAGTTCGAGAGCTCTTGA TGGCGTTTTGTAGATGGGTGCTACAGGACCACATGCACAAGTGCCCATGC CGTCCTGCGGCTGCGGAATTGATGCCGGTCGCATTTTTTGAGCTACCGCT GCGCAATCTTTGGCCGATCTTGCAGTGACCAGCGTGTTGATGACAACGGT ACGGACGCACCCGAGGGGGCACGCACTTTAGGTCTTAGCGTGATGGGGTA TCGCGTTCGTTTCTTTAGAGTGTTCGTTACTATTTCCTAAGTCGTCGACC TGTCCAACGCAGGGAAATACACACGAAAGTGAAGCTTGATGGAAGAGCCC CCGCAAGCAGCCAAGAGCTTATGTTTGCCCGAATGCCAAACGGAGCGCGT TGGTCTTGTCCGGCCATGGTGTGCCTATTCACTCCCGCTTTTTCGCCCGC CCATCCGCCCCCGCCCCCCTACGCGCTCAGATTCTCATCGCGGAACGCTG CGTTCTCCACACGCTCGGCTTTCAACTCACCGTGGAGCACCCGTATTCGG TGGTCATGTCTTTGCTGAAGAAGCTCTTTACGATGGGCAAGGGCGCCGAC GGGGGAAGAGGGGCCGACAAGGCTCTCAACCGACAGCTCAGCCAGGTCAG TACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13208:347..2950-

>mRNA_Ecto-sp13_S_contig13208.2598.1 ID=mRNA_Ecto-sp13_S_contig13208.2598.1|Name=mRNA_Ecto-sp13_S_contig13208.2598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13208:347..2950- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAACCTACGTGCTACGAAGCTGTATACGGTGGATCAGATACGGAA
TTCTCCCTCCAGAAAAGACGGCGTTTCCGAGGCCTTGGAGAATGACTATC
GGCGAAAGACGGGGCTCTTTATCAAGGCCGCAGGGAAGGAGCTTGAGCTG
CCGGTCGACGCGGTAGCGACGGCGCTGGTCTTCTTCCACAAGTTCTTCAT
GCTGCACTCTTTCCAGAAACACGAGCGCTTCTTCGTGGGATCGGCGTGCC
TCTTCCTGGCCGCCAAGGTGGAGGAGAGCTCAAAACGAGTGGAGCAGGTG
ATGAGCAAGAGCTGGAAGGTCTGGAATGGCGGCAGAGATCCCCCCTCCGA
AAACGAGAAGTCCTTCAAGAGACTGAGGGAGAAGATTCTCATCGCGGAAC
GCTGCGTTCTCCACACGCTCGGCTTTCAACTCACCGTGGAGCACCCGTAT
TCGGTGGTCATGTCTTTGCTGAAGAAGCTCTTTACGATGGGCAAGGGCGC
CGACGGGGGAAGAGGGGCCGACAAGGCTCTCAACCGACAGCTCAGCCAGG
TCAGTACG
back to top