mRNA_Ecto-sp13_S_contig13204.2596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13204.2596.1
Unique NamemRNA_Ecto-sp13_S_contig13204.2596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13204.2596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13204contigEcto-sp13_S_contig13204:86..3077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size337
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.9341588-UTR-Ecto-sp13_S_contig13204:85..1861681462706.9341588-UTR-Ecto-sp13_S_contig13204:85..186Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13204 86..186 +
1681462706.9723063-UTR-Ecto-sp13_S_contig13204:3030..30771681462706.9723063-UTR-Ecto-sp13_S_contig13204:3030..3077Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13204 3031..3077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.9493904-CDS-Ecto-sp13_S_contig13204:186..3481681462706.9493904-CDS-Ecto-sp13_S_contig13204:186..348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13204 187..348 +
1681462706.9616518-CDS-Ecto-sp13_S_contig13204:3003..30301681462706.9616518-CDS-Ecto-sp13_S_contig13204:3003..3030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13204 3004..3030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13204.2596.1prot_Ecto-sp13_S_contig13204.2596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13204 187..3030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13204.2596.1

>prot_Ecto-sp13_S_contig13204.2596.1 ID=prot_Ecto-sp13_S_contig13204.2596.1|Name=mRNA_Ecto-sp13_S_contig13204.2596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MLVFQGCPGIQESSSVDQAIIYLQQQNREERGGDFRAQLWLNVGRGRAGG
RSEKAFRAAGFS*
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mRNA from alignment at Ecto-sp13_S_contig13204:86..3077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13204.2596.1 ID=mRNA_Ecto-sp13_S_contig13204.2596.1|Name=mRNA_Ecto-sp13_S_contig13204.2596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13204:86..3077+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGCTCCAAGCAGCACTCCGTGCGTGCCGAAGTGTTACTTTCCGCGCA
CGATCGAGGGGGGGGGAGGGATAACTCGCGGGTGGTCTACGCTACGCCCT
GATGCTGGTGTTTCAGGGCTGTCCAGGGATACAAGAGAGCAGCAGCGTCG
ACCAGGCTATAATATACCTCCAGCAGCAAAATAGGGAGGAGCGCGGCGGC
GATTTTAGGGCTCAACTCTGGTTGAACGTTGGGAGAGGCCGGGCTGGTGG
ACGGAGCGAGAAGGTGAGAAGTGTGGCCTTCCCTACCCAGGCTTCCGGGA
TTTTTTTGGTGTGGCGTAATCGCGGTGTGACAGGGGTCGAGGTTAGGGAT
CAGGAGAGCCAGGCAGGCACGCTACCGCCATCTCGGGGGCAGCAGAGAGG
AGATTACAGACAACGACAGACTCTGAACCCTCCTAAAAAGACTGCTGCTG
GAACTAAGAGGCACCGCGTGGCGAGATCGATGACATCCAACAAATGCTGT
TGCCCTACGACAGAATACGCTGGCTCGCTCCCGTCTGCTCTTTCGAGTTT
TTTTTACTTCTGCCACCACTCAAGAGTCCTCCTCTGCTCGCACACGGCGG
TCCTCGCGTTGGAACGTCGCCGGAGCAGGGGGAAGGAGTGATGAGATATG
CAGATAAATCGCCGGTGTTTTTTTTTGGCTGGTGCCCGACGACGACGTCG
CGGCCTCTCTTTGTTTTTGTTGGCTGGTAGGCCGAGAGATTATTACACGA
CCAAGAGACAGGCAGAGAGCCGCCCCACGATTTCACAAGACGCTCGAAGA
GCAGGTCGTGGGACAGCAGTCTTCATCGTAGGCCGGTCGAGCTTGTCGGT
CTTGTTGGGAAGGGCGATGGCCTGTGCTCGTGTCTCTCCCATTGAACGTA
TTGCACCACAGCAGCCCCTCAAAACGGCAGCGGGCGACAGCAGCAGCAGA
CACACACACCACGCTCCTGTTTTATCTTCGTCTGTTTTCCAACCATTGTT
GCGGGGAATAACAGGGGCTCCCAAACAACAGTTAACACCCGCTTTTCTTG
TGATGTTCGCCCCTTGCCCGAGAGTCTCCCCGATTTACATACTAGCTTAT
GACCCCTCCTCCCTTCCAGCTGGGGCGACGTTGTACTGCTTTGAGCTTTG
GGTGGTGTGTACCATGAAGTACCACATGAAATGTGTTGCACAACGAGCGC
GGGTGGGTACATGTATTTGTGTTTGCTACATGATGTTGCGTGGTTTTGTT
TGGTCTTTGTTGCTGTTCCCGAGGCCTTTTGGGCGTAGACGAGCTCTCCC
TACCTGCCGCTGCGTGTTTCCCGTGTTGCCACTGGCACCGCGCCGCGCCG
CCGCAGCCACGCCTGTGTTCTCTATTCAACGCCAACATCGTGAAGAGTGG
ATAGTTATAGCGCGCTCATGTTTTTCCAGTGTACGAGAATAGAGCGCAAC
AGCAGACAGCCGTGTGAGAGAGAAACGGTAGGAAGGCCCTCGGAAGATGA
ATCGCCGATAGGCGTGGTGTGGTGCGTTGGTGGGAGTTTAGGAAGAGGAG
GCGCGGGGGGGGTAAACGCGCCTCGGCTCTCGGTTTTCACTAAGTTTTAT
CCGAAATGCGTGTTCGTAGCACAGCAGTCCATGGGTATGACGTTATGTGT
CTTCTGTTTCCCTACACTCCTTGCATGTGCAGAACCTTCTTGGTAGTCTC
CTGATTTCCTTCGAGAACTGGTGGCCATATGAGAAGAGCTGCGCACCTCC
TGACAGCAGTGGAGATTCCTAGTACTTCAGTAGCACACGTGCAACAGTAA
CGAACGCTCTTCAGTACCAACCGCTCACACTCGTTGTAGTTTTGCGGTCT
CTCTCCACAGCTATTGAACGGCCCGGTCTATGCATCCGGTTGTGTACTTT
TAAATGTGGATCTATATCTTCGCGTGTGTAGTGTGGTATCGTACATACTG
CCTGTTTTGGGTGTGAGTTGTTGCCCGTGACCACGCGCAAGGTATTGATC
TTGAAAGGGTGCTGAGCCGAGACTGGCACGGTACCATACATCCGTACACC
TTTAAGTGTCCCCCCTGGCGGTATTGTAGACATCGCGAGGGCTGTGTAGC
TCTTCCGGTTATCCCCGCTAGCTACTAGCAGAGTGTCCTCGCGTATTTTG
TTCGTCGCCCTGCACACACAGAAAACGTGTGCCGCACACATACCCACGTG
GAAGACGCTTTCTAGACTCTGTCCGATGTCCGAGGTACACGTTTGTAAGT
GGAAGCACCAGGTGGTGGCAACGCCGTTTCGTCATGTGAAACTTTCGCCC
GTTCCCGTAATTTTGGGGTTTCGCCCGCAGTATACGTAACAAGGCTAGAT
CGCCGTCGCGGGGGAGGTTAGTATCACGATGTGGCGTATGCTGTGATGCT
ATCGTGGGTGTTGGCGAGCGCACCCACTTACAAGTCGTATTTTGGCCAAC
GGCCTTTCCTGCACGACAGCGATTTCTTGGTGGACATATTTTTATATGAC
CGAGATGCAGCATGTGCCTCACTTTTCACGTCGAAGGCGATCGGGTTACA
CTTTGGTTGGGGACCTTCACGTAGGACCGGACGTTGAACCTAGGCTCCTC
AATTGGGATGTGCCACCCGCAGTGGCCGAGCCAGCCCAACCTAACCCAAA
CCCCAACCGGAACCCTCATCGAAGGCAAGTTTCACCCCGCCTTCGGACGC
TCCTTCAAACCCTAACCGCGGAGGTAAAAGAGTTGGCAACCAGGAAATAC
CACGACATATTCTGCTTGCAGGAAAGCTTGAGCACTAGTCACTCAAAGGA
TTTGTCAATCGCTCTTAAACCGCTTTTTGTTGTTGTCGATCGTAAGAGCC
TCACGTAACCCCGATGTCTAATCGCCTTCTTCAACCCCGTGTTGGATTTT
CACACCGCTGTTGGCCAGGCGTTTCGCGCTGCAGGATTCAGCTGACGAGC
TTGCCGTGAGCGACAGAGTAGGGGCGGACGAGGACAGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13204:86..3077+

>mRNA_Ecto-sp13_S_contig13204.2596.1 ID=mRNA_Ecto-sp13_S_contig13204.2596.1|Name=mRNA_Ecto-sp13_S_contig13204.2596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13204:86..3077+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTGTTTCAGGGCTGTCCAGGGATACAAGAGAGCAGCAGCGTCGA
CCAGGCTATAATATACCTCCAGCAGCAAAATAGGGAGGAGCGCGGCGGCG
ATTTTAGGGCTCAACTCTGGTTGAACGTTGGGAGAGGCCGGGCTGGTGGA
CGGAGCGAGAAGGCGTTTCGCGCTGCAGGATTCAGCTGA
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