mRNA_Ecto-sp13_S_contig1320.2595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1320.2595.1
Unique NamemRNA_Ecto-sp13_S_contig1320.2595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: D8LFZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ2_ECTSI)

HSP 1 Score: 1096 bits (2835), Expect = 0.000e+0
Identity = 643/741 (86.77%), Postives = 648/741 (87.45%), Query Frame = 1 
Query:  508 MRGGGNTGSSSLSAVSPTSSHSEDAAFQQQLSLEAESRAXXXXXXXXXXXXXXXXXXXXXGSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPGMQQQQQQ--HDNGASPRHPNHPRLSPSYRGPSPHSHHDDYHSPGGVAGSRTGNRGDYGKAVNGAAAHWELGYGGGNHTARELTPHGGGGRGGAGIGAEYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTGSSQHFGGRHLRQEHGAGSAGAAGPRDFDFSERDTSKVHRGGGAGPIDLDDYRLREYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDLXXXXXXXXXXXXXXDGGRGFSRMGGSSPYPPGSAASQSDFMPLQRVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHR-GLHDGGLPSSSALHRTSPGSVHGSGXXXXXXXXXXXXXXXXXXRQGGMVGGSSNSHGCDASGLSGMFEGMNLNSPPGLAPPSTCSPGSLQQKQQQGQSXXASGGGAGCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKIQTEKEKL 2721
            MRGGGNTG+SSLS VSPTSSHSE+ AFQQQLSLEAESRA                     GSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPGMQQQ     HDNGASPRHPNHPRLSPSYRGPSPHSHHDDYHSPGGVAGSRTGNRGDYGKAV+GAAAHWELGYGGGNHT REL PHGGG         EYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTGSSQHFGGRH RQEHGAGSAGAAGPRDFDFSERDTSKVHRGGGAGPIDLDDYRLREYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDL     XXXXXXXXXDGGRGFSR+GGSSPYPPGSAASQSD  PLQRVRQXXXXXXXXXXX       XXXXXXXXXXXXX   GLHDGGLPS                XXXXXXXXXXXXXXXXXX          +SHGCDASGLSGMFEGMNLNSPPGLAPP TCSPGSLQQKQ     XX    GAGCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKIQTEKEKL
Sbjct:    1 MRGGGNTGTSSLSVVSPTSSHSEEVAFQQQLSLEAESRAAAAAPPLSARPSGVVASNNN-GSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPGMQQQXXXXXHDNGASPRHPNHPRLSPSYRGPSPHSHHDDYHSPGGVAGSRTGNRGDYGKAVSGAAAHWELGYGGGNHTPRELAPHGGGXXXXXXXXGEYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTGSSQHFGGRHPRQEHGAGSAGAAGPRDFDFSERDTSKVHRGGGAGPIDLDDYRLREYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDLDHMRQXXXXXXXXXDGGRGFSRVGGSSPYPPGSAASQSDLWPLQRVRQXXXXXXXXXXXILVHEARXXXXXXXXXXXXXXXXGLHDGGLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XSSHGCDASGLSGMFEGMNLNSPPGLAPPPTCSPGSLQQKQXXXXXXXXXXXGAGCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKIQTEKEKL 737
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BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A0A1E7FL20_9STRA (KH_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL20_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.640e-21
Identity = 74/226 (32.74%), Postives = 117/226 (51.77%), Query Frame = 1 
Query:  691 SPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAAD--------------------TSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRD----------MCTVAG----ERVVTLQGPMS-SVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPGMQQQ 1263
            +P+  +  +KLLVSN++AG++IG+ G  I E++ +  A IK++  G +YPGT +RV LV G+  +V++A   ++   Y   +                    T  D   R+L+P ++ G+IIG  G  +  + + +GV+S+++SP+D              AG    ERVVTL GP   S    L +++D M  +   SRY NM+T Y   HL +P    P  QQQ
Sbjct:   27 NPASFQSAIKLLVSNNVAGSIIGRAGQTISELQTQSSARIKLSQTGDYYPGTQDRVCLVQGQLSTVKLAVQLLLERFYMLQEQQHTQYLAWQPKNDEHAPTPTGFDFVVRLLVPSSSCGMIIGKAGANIKHMEESSGVSSVRLSPKDGPDQPQAQQHQTRPAGPGTQERVVTLTGPSKESCTKCLFIVIDGMFANHEISRYTNMTTSYSR-HL-VPGTYTPAPQQQ 250
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BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.980e-21
Identity = 62/181 (34.25%), Postives = 101/181 (55.80%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRA 1215
            +K LV N  AG+LIGK G  I +I+ +    + +  +G +YPGT ER VLV GE   V+ AC  I+ T++   +               ++++TQR+LIP  A GL+IG  G  +  L   +G A + +  +    V  ER+VT+QG ++S    + ++VD+++E+   SR+ N+S  YR+
Sbjct:   87 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRS 265
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BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.410e-19
Identity = 62/180 (34.44%), Postives = 101/180 (56.11%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYR 1212
            +K LV N  AG+LIGK G  I +I+ +    +++  +G +YPGT ER VLV GE   V+ AC  I+ T++   +               ++++TQR+LIP  A GL+IG  G  +  L   +G A + +  +    V  ER+VT+QG ++S    + ++VD+++E+   SR+ N+S  YR
Sbjct:   91 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYR 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.370e-19
Identity = 64/182 (35.16%), Postives = 105/182 (57.69%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIY-----------------TAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIY 1209
            LKLLVSN+MAG+LIGK G  I  ++ +  A +KV+ +G + PGT +RVVLV G+   V+ AC  ++ T++                 T  D +L++TQR+LIP +A GL+IG  G  +  L + +G A + +S +   + + ERVVT+ G + +    + +++D +  +  A+ Y N+S  Y
Sbjct:   50 LKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGRDRDCGVPAPLDIGTERD-ALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSG-ARVSLSQKQT-SPSSERVVTIGGSLGACRLCIDMLLDTLKREPAAAVYTNLSVNY 228
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BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A0A6P8IIV0_ACTTE (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IIV0_ACTTE)

HSP 1 Score: 101 bits (251), Expect = 5.770e-19
Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYT---AADTSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMED 1170
            LK+LV N  AG++IGKGG  I +++    A IK++PN  +YPGT ER+ L++GE  ++    D ++  I      A  + +IT         ++++P++ +G+IIG  G  +  + +Q G A IQ+S +D  +VAGERVV + G    V     +I  ++ ED
Sbjct:   53 LKILVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVDTIITMLDFVIDKIRQEPQGAKVNSNITFDRERAKQMKIVVPNSTAGMIIGKGGTAIKSISEQTG-ARIQISQKDADSVAGERVVCVSGEEDQVQAACAIITAKVQED 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A7SKT2_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKT2_NEMVE)

HSP 1 Score: 99.8 bits (247), Expect = 1.780e-18
Identity = 55/163 (33.74%), Postives = 93/163 (57.06%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAAD---TSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMED 1170
            LK+LV N  AG++IGKGG  I +++    A IK++PN ++YPGT ER+ L++GE  ++    D ++  I         S+ I+         ++++P++ +G+IIG  G  +  + +Q G A IQ+S +D  +VAGER+V + G    V     +I  ++ ED
Sbjct:   48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTG-ARIQISQKDAESVAGERIVCVGGSQEQVTAACVIITSKVQED 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: UPI0009E5D821 (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D821)

HSP 1 Score: 99.4 bits (246), Expect = 2.570e-18
Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAA-----------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMS 1200
            +K+L+ N  AG++IGKGG  I E++ +  A IK++PN  +YPGT ERV L++GE  ++    + ++  I               D       ++++P++ +GLIIG  GV +  +  Q G A IQVS ++  TV GERV+ + G +  V     +IV ++ ED   +   N+S
Sbjct:   52 VKILIPNHAAGSIIGKGGANIAEVQQQTGARIKLSPNNDYYPGTQERVGLIMGEVETINKMLNFVIEKIRQEPQAMRLNPAMTYDRERAKQMKIVVPNSTAGLIIGKSGVTIKYIGDQTG-ARIQVSQKNAETVPGERVIGITGSLEQVQAACAVIVAKVQEDPEHALNNNIS 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: UPI000A2A8354 (RNA-binding protein Nova-1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8354)

HSP 1 Score: 97.4 bits (241), Expect = 7.900e-18
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAA-----------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMED 1170
            LK+LV N  AG++IGKGG  I +++    A IK++PN  +YPGT ER+ L++GE  ++    + +V  I               DT      ++++P++ +G+IIG  G  +    +Q G A IQ+S +D  +VAGER+V + G    V    ++I  ++ ED
Sbjct:   22 LKVLVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVENIITMLNFVVDKIRQEPQQAKMNANIQFDTERAKQMKIVVPNSTAGMIIGKGGSAIKSYSEQTG-ARIQISQKDADSVAGERIVNVSGTEEQVQAACSIIAAKVQED 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Match: A0A8J5FG42_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FG42_ZINOF)

HSP 1 Score: 93.2 bits (230), Expect = 1.190e-17
Identity = 53/173 (30.64%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:  715 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQR----VLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVH 1221
            ++LLVSN+MAG++IGKGG+ I + + +  A I+++ N   +PGT +R++L+ G    V  A + I+  I +  +   D+  R    +++P+++ G IIG  G  +    +++  A I++SP+D  +   +R+VTL G     +H + LI+ +++ED    +  N    Y  V+
Sbjct:   36 VRLLVSNAMAGSIIGKGGSTINDFQTQSAARIQLSRNHEIFPGTSDRIILISGTFDEVLKATELILEKILSEVEDGNDVEGRTKVKLIVPNSSCGAIIGKGGSTIKSFIEESR-AGIKISPQDDNSGLNDRLVTLAGSFEEQMHAIFLILSKLIEDPHYPQKVNSPFTYSGVY 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1320.2595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ2_ECTSI0.000e+086.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7FL20_9STRA5.640e-2132.74KH_1-domain-containing protein n=1 Tax=Fragilariop... [more]
D8LGY3_ECTSI7.980e-2134.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLG6_9PHAE1.410e-1934.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIW2_9STRA3.370e-1935.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P8IIV0_ACTTE5.770e-1934.97RNA-binding protein Nova-1-like isoform X1 n=2 Tax... [more]
A7SKT2_NEMVE1.780e-1833.74Predicted protein n=4 Tax=Nematostella vectensis T... [more]
UPI0009E5D8212.570e-1833.53RNA-binding protein Nova-1-like isoform X1 n=2 Tax... [more]
UPI000A2A83547.900e-1833.74RNA-binding protein Nova-1 n=1 Tax=Exaiptasia diap... [more]
A0A8J5FG42_ZINOF1.190e-1730.64Uncharacterized protein n=2 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1320contigEcto-sp13_S_contig1320:9391..14779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1103.2
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LFZ2
Model size3217
KEGG koko:K14944
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2191@1,KOG2191@2759
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-21_005200.1
Cds size2724
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1320.2595.1prot_Ecto-sp13_S_contig1320.2595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1320 9955..14779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.836499-UTR-Ecto-sp13_S_contig1320:9390..97381681462706.836499-UTR-Ecto-sp13_S_contig1320:9390..9738Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1320 9391..9738 -
1681462706.84819-UTR-Ecto-sp13_S_contig1320:9809..99541681462706.84819-UTR-Ecto-sp13_S_contig1320:9809..9954Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1320 9810..9954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.8603323-CDS-Ecto-sp13_S_contig1320:9954..100841681462706.8603323-CDS-Ecto-sp13_S_contig1320:9954..10084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1320 9955..10084 -
1681462706.8700125-CDS-Ecto-sp13_S_contig1320:10469..120071681462706.8700125-CDS-Ecto-sp13_S_contig1320:10469..12007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1320 10470..12007 -
1681462706.8785477-CDS-Ecto-sp13_S_contig1320:12661..129221681462706.8785477-CDS-Ecto-sp13_S_contig1320:12661..12922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1320 12662..12922 -
1681462706.8873017-CDS-Ecto-sp13_S_contig1320:13984..147791681462706.8873017-CDS-Ecto-sp13_S_contig1320:13984..14779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1320 13985..14779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1320.2595.1

>prot_Ecto-sp13_S_contig1320.2595.1 ID=prot_Ecto-sp13_S_contig1320.2595.1|Name=mRNA_Ecto-sp13_S_contig1320.2595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=908bp
MSTLFASIAAWDLNPTSEDEKALGSASPTGTPTAAEGNAAAAGWPVSETS
VPLTWNSGDLEEMMRGLDSTSRSASAPLLEDAGSSNSPPLSREDLVEERD
ESVIGFPISRGSSPLYRKEPQPQQRQRQQQQQHHHHVGCSSTSDYKMDHQ
QQQHLDDTAPSSPCTPSLHMRGGGNTGSSSLSAVSPTSSHSEDAAFQQQL
SLEAESRAAAAAPPLSARPSGGVVANNNNGSPSGGRFGLKLLVSNSMAGT
LIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMAC
DRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVAS
IQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMS
TIYRAVHLHLPPYAVPGMQQQQQQHDNGASPRHPNHPRLSPSYRGPSPHS
HHDDYHSPGGVAGSRTGNRGDYGKAVNGAAAHWELGYGGGNHTARELTPH
GGGGRGGAGIGAEYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTG
SSQHFGGRHLRQEHGAGSAGAAGPRDFDFSERDTSKVHRGGGAGPIDLDD
YRLREYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDLDHMHQQQQQQQ
HSHDGGRGFSRMGGSSPYPPGSAASQSDFMPLQRVRQQQQESSPGGSGIL
VHEARAAAAAAQHKQQQQHRGLHDGGLPSSSALHRTSPGSVHGSGGGGGG
STVLVSPPHGGALRQGGMVGGSSNSHGCDASGLSGMFEGMNLNSPPGLAP
PSTCSPGSLQQKQQQGQSSGASGGGAGCIVHGELPVPDADVGIILGKGGA
TVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKI
QTEKEKL*
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mRNA from alignment at Ecto-sp13_S_contig1320:9391..14779-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1320.2595.1 ID=mRNA_Ecto-sp13_S_contig1320.2595.1|Name=mRNA_Ecto-sp13_S_contig1320.2595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1320:9391..14779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAACCCTGTTTGCGAGTATTGCGGCGTGGGATCTGAACCCCACGTC
GGAGGACGAGAAAGCCCTGGGGTCGGCGTCCCCGACGGGAACCCCCACCG
CCGCCGAGGGAAACGCCGCGGCGGCGGGCTGGCCCGTGTCCGAGACGAGC
GTGCCTTTGACGTGGAATTCGGGCGACCTCGAGGAGATGATGCGGGGCCT
TGACAGCACCAGCCGCTCGGCATCGGCGCCGCTCCTGGAGGACGCCGGCA
GCAGCAACAGCCCCCCGCTCTCCCGCGAAGACCTCGTGGAGGAGCGAGAC
GAGTCCGTGATCGGGTTCCCGATCTCTCGAGGGTCGAGCCCGCTGTACCG
CAAGGAGCCGCAGCCCCAGCAGCGGCAGCGGCAGCAGCAGCAGCAACACC
ATCATCATGTAGGTTGCTCTTCCACGTCCGACTACAAGATGGACCACCAG
CAGCAGCAGCACCTCGACGACACCGCGCCGAGCTCTCCCTGCACGCCTAG
CCTGCACATGCGCGGGGGCGGCAATACCGGCAGTAGCAGCCTCTCGGCGG
TGTCGCCCACGTCGAGCCACAGCGAGGATGCCGCGTTCCAGCAGCAGCTG
TCGCTGGAGGCCGAGTCCCGGGCGGCTGCGGCCGCCCCGCCCCTCTCCGC
GAGACCCAGCGGAGGGGTGGTTGCTAACAACAACAATGGGAGCCCGTCGG
GCGGGCGCTTCGGACTCAAGCTCCTCGTCTCCAACAGCATGGCCGGCACT
CTCATCGGCAAGGGAGGCACGCGCATCTGCGAGATCAAGGACGAGGTGAG
AGACGGGCGTGTTGGCACGCACTAGAGAAAAGACCGTCATCATGTTCTCA
CTCCACCAACTCGTTCATTTTTCTGTCTTTTCAAAATTTTGTTGGTGTCT
ACTATTGCTGTAGCATGCTACCAAAATATTGTTTTATTTTGTTGTTTGAG
TACTCATACCCCCACTGGCTAGAAGGCGGATTTTGCGTTGGTCATGAATG
TATTTTTGCTCGGTCTCGCGCTGTAGTGTCGCGATCAACCCCTGCCGCTC
CTCTGGGCCTCCGACTGCACTGCTGTAGTTGATTGACGCCCCTTCCTCCC
ATACCCGTCAAGGAAACTATTTGTTCAGTGTGGTATTCCAGCAACTTGTC
GGATTGATATCGCTTCGTGTCGACCCCTCCAAACGGGCACACACCTATTT
TTTCTCACCTCGGAAAAGAGCCACCCATGCAAGAAAGGGCGGGTGATGCG
TTTTTTCGTGAGTACTGCTGCGTTGTACAACACATACGGGTTGGGCTCAT
CATCAGATTCCCGCGCGCATTCAGGCCCTTCCACACAACCACGACGCGCA
AAAACACCAGCAATGCCTTCGGCGCCGTGTATCAACGCTGTCTCTCGAGG
GAGTGAAAGAAAAGCCGAGTGCAAGGATTTTTTCGCTCGCATGTCCGTCC
GTGTGTGGTACCTCGAACACGAGCAGCGGTGATTTGTTGTCGTCCTGATG
TACTCGTCCAGCTCTTACTTTTTCCAAGGCCTAGAAACGAACATCCCAAA
ATGGTGCACGACAGAGCTAGCAGCCTTTTTGCGGAATCTTTTGAACCTGC
TTCTGAAGTTTGAGACAACAGACCTCACGTGACGTGACCCAGTTGGACGG
TGAAAATTTGACCATCGTGCACCTGGCCCGACCTACCCCACTGCCTCACT
CGCCTAGACATCCATTGTTTGATTTTTATTTTCTCGTGACGATGGTCTGT
TCGTGAAGCACCACCCCCCAAAAAAATTGCTTCCTTTTTTTTAGCACCTC
CATGATTTATTTGTTCATTTGCGTTTGCCTTGTCGATTTTTTTTGTCCGT
GTTGCAGTGCCTCGCCGACATCAAAGTCACTCCCAATGGTCGGTTCTACC
CGGGGACTCATGAGCGCGTTGTTCTCGTGGTCGGGGAGCCCGGCAGCGTC
CAGATGGCCTGCGACCGCATCGTCACCACCATTTACACCGCCGCGGACAC
CAGCCTGGACATCACTCAGAGGGTGCTAATCCCCGACGCCGCCAGCGGCC
TCATCATCGGCCATGACGGCGTACGCCTCGGAGACTTGCGCCAGCAGGCC
GGCGTTGCCTCCATCCAGGTGCGCGTCGTTTCCGTTGTTCTAGTGCAAGA
AAAACTGGAAGAGTGAATGACAACACACCATTGTAGCAAGGCGTCGGTGT
TTTTTGGCGTCATCTGGAATCAACCCGGCTTGCTGCTGCCTCCCTATTTA
GATAAAATCCATGGTTTGTTGTGTTTATATTTTTGCAGCAGTCAAAGTGG
GATTTTGTCCCTCGGCCGGCCGTATTTTTTCTGGTTCGGTTTCCGACTAG
TCCCCCCTCCTCCGTTTAAAGTCACGGTCAACTATTTACTGCTGCCAATA
GGTAACGACGAAAAGAAAGACCCTTCATGATGATGCCCACCCACCTCCGA
TCCCCCGTCTTCGGCTCCAGATCGGCTTCGTTTATATATGGTACAGCGGT
ACACCTGCTCGCGCTTCGACGGAATATCCTTGTAGTTGACGGTTGTTTAG
ACCTCATCGGCAGTATCGGTGACCTTTTCGTGAGTGAGATCGCAAATAAG
CGAAAAGGGCGTCTGTCTCCACATCGCTGTATCGTGTTAACGTTCTTACT
GCCGTGGTAAATTTTGCCTGGGTATCTTCGCGATGGTGATGAAGGATACA
GATGTATCCTGTCAGATTGTAACTCGGTCATTTCCCACTCCGGCCACTTG
CCCACCCCCTTGTTCTGCACAGGTGTCCCCCAGGGACATGTGCACCGTGG
CGGGCGAGCGCGTCGTTACCCTCCAAGGCCCTATGTCCTCCGTCATCCAT
GGGCTGACCCTCATCGTCGACCGCATGATGGAGGACACGACCGCCTCCCG
CTACCAGAACATGAGCACCATTTACCGCGCCGTCCACCTGCACCTGCCCC
CCTATGCCGTTCCGGGGATGCAGCAGCAGCAGCAGCAGCATGACAACGGG
GCCTCCCCCCGCCACCCCAACCATCCCCGCCTGTCCCCGTCCTACCGTGG
GCCTTCCCCCCACAGCCATCACGACGACTACCATAGCCCCGGCGGTGTCG
CGGGGTCCAGAACAGGAAACCGCGGCGACTACGGCAAGGCCGTCAACGGT
GCGGCGGCCCACTGGGAGCTGGGATACGGGGGAGGGAACCACACTGCGCG
GGAGCTGACCCCTCATGGGGGGGGCGGACGTGGCGGCGCAGGAATTGGGG
CGGAGTACGTCCACCGTAACATGTCCATGCCGACTGTGCACCCGCTGTCG
GCGCCGCTGGGAAGCCCGCTGAGCCACCAGCACCGCAGCCACACCGCCCC
TGCCGCCGTAACCGGCTCTTCGCAGCACTTCGGCGGCAGGCACCTCCGCC
AGGAGCACGGCGCTGGTAGCGCGGGCGCCGCCGGCCCGCGGGACTTCGAC
TTCAGCGAGAGGGACACAAGCAAGGTGCACCGCGGGGGAGGAGCGGGACC
GATCGACCTAGACGACTACCGCCTTCGCGAGTACGACTCCCCTTCCCCGG
CCGACCTAGGCAGCCGGCCCGGTAGCCGGGAGGGCTACGTGCACCACTCG
CCGCACCTCCCTGGGCCTTCGCCGCGGGACCTGGACCACATGCACCAGCA
GCAGCAGCAGCAGCAACACAGCCATGACGGGGGCCGCGGGTTCAGCCGCA
TGGGGGGTAGCAGCCCTTACCCGCCAGGGTCCGCTGCGTCTCAGTCTGAC
TTTATGCCGCTCCAGCGGGTACGCCAGCAGCAGCAGGAGTCGTCACCAGG
CGGTAGCGGCATCCTGGTGCACGAGGCACGCGCGGCGGCGGCGGCAGCTC
AGCACAAGCAGCAGCAGCAGCACCGGGGCCTCCACGACGGAGGCCTGCCA
TCCTCCTCGGCGCTTCACCGCACGTCCCCGGGCTCGGTACACGGCAGCGG
CGGCGGCGGCGGCGGCAGCACCGTGTTGGTAAGCCCGCCCCACGGTGGAG
CTCTCCGTCAGGGGGGGATGGTCGGCGGCAGCAGTAACTCGCACGGGTGC
GACGCCTCCGGCCTCTCCGGCATGTTCGAGGGCATGAACCTTAACTCTCC
CCCGGGGCTCGCTCCCCCGTCAACGTGCTCGCCGGGATCTCTGCAGCAGA
AGCAGCAGCAGGGGCAGAGCAGCGGGGCCAGCGGCGGTGGGGCCGGGTGC
ATCGTCCATGGCGAGCTTCCGGTGCCGGATGCGGACGTCGGGATTATCCT
GGGCAAAGGCGGTGCCACCGTGCGCGAGCTACAGCAGCTGAGCGGGGCAA
AGATCATGATGTGAGTTTTGTTGGGGGCCTTCTTTTTTTTTCTCGCAACT
CGTGCGGATGCTGTTAGGGCATGGTGTTTCTTCGGGTAGGGTAGAGACCG
CGGGCTGTAGCCGGTTTACGAACAAAAACAAGCATCTGGAAGCCGGATAA
TAAACATGGTTTTGAGGGTGGACTTGTGTCGGTAGGGGGAGTTTAGTAGG
TGTTCGCGTTCATCGTAAACTTTTTGAAAGGAGAAAAACACATGACCGCT
AGCTATATTTCGCTTTGCCAGATTTGCTGCAGTCGCCCCACCACGGCAAC
TGCTGGTACGAATCCGGTCTCTATACCGACCATACACAACCCACACCGAC
CCAATTTACTTCTTATCTGCCGTTCCCCTCACCTCGGTCATGCAGCGCCC
GCCGAAATGAGTTCATGCCGGGCACCAAGCACCGCCTTGTCACGCTTGCG
GGAGCACCTTTGGCGGTGAACATGGCTCGCTTCCTGATCATGCGCAAGAT
CCAGACAGAGAAGGAGAAGCTGTGAGCTATCTACCCTTAGTCAAGGAACA
GCAGTGCTACCACGAAGACCATTCCATCCCCCCCCATCCCCGCAACGCCG
CCGGAGTGTGTGCGTGCGCGGACATGTGTGTGTCTTGTGAGAAGAAGTGT
TTCTTCATTTTTTTTTTTAGATGGACAAAGAGTCGAAATGAAACGTGGGG
GCTGAGGCCTCCCAAGGCGTGGGGCTTTTACAACCCCCCGGTGTTGCGTG
CGTGTGCGTTGTTGCCGCGCGCTTTTTTGTTCCACCACCACCGAGATGGC
GTGTATCTGTGTTGATTTGATCGGGGGGCGGTGGCCTGAGGCGATTCACA
GCCGGGGAATGAGTGTTTTGCGTTCAGTTCTGTGAACGGGGAGGGTTGAA
GAGACAAGTGGACCAGTCGATTGGACCAGTCGATTGCCTTGCCCTCTCCG
GAGATACACGTCGAGTTGGTGGTGATGATGGTGCGATGTCTTGGCTGTGG
GCTGGATTGCGTTGAATCCAAAATCGATGGGCGTCGGCCGCACTGCCCTT
GACATCCATCACATGAGCGTCCACCTCTTGTTATTCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1320:9391..14779-

>mRNA_Ecto-sp13_S_contig1320.2595.1 ID=mRNA_Ecto-sp13_S_contig1320.2595.1|Name=mRNA_Ecto-sp13_S_contig1320.2595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1320:9391..14779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAACCCTGTTTGCGAGTATTGCGGCGTGGGATCTGAACCCCACGTC
GGAGGACGAGAAAGCCCTGGGGTCGGCGTCCCCGACGGGAACCCCCACCG
CCGCCGAGGGAAACGCCGCGGCGGCGGGCTGGCCCGTGTCCGAGACGAGC
GTGCCTTTGACGTGGAATTCGGGCGACCTCGAGGAGATGATGCGGGGCCT
TGACAGCACCAGCCGCTCGGCATCGGCGCCGCTCCTGGAGGACGCCGGCA
GCAGCAACAGCCCCCCGCTCTCCCGCGAAGACCTCGTGGAGGAGCGAGAC
GAGTCCGTGATCGGGTTCCCGATCTCTCGAGGGTCGAGCCCGCTGTACCG
CAAGGAGCCGCAGCCCCAGCAGCGGCAGCGGCAGCAGCAGCAGCAACACC
ATCATCATGTAGGTTGCTCTTCCACGTCCGACTACAAGATGGACCACCAG
CAGCAGCAGCACCTCGACGACACCGCGCCGAGCTCTCCCTGCACGCCTAG
CCTGCACATGCGCGGGGGCGGCAATACCGGCAGTAGCAGCCTCTCGGCGG
TGTCGCCCACGTCGAGCCACAGCGAGGATGCCGCGTTCCAGCAGCAGCTG
TCGCTGGAGGCCGAGTCCCGGGCGGCTGCGGCCGCCCCGCCCCTCTCCGC
GAGACCCAGCGGAGGGGTGGTTGCTAACAACAACAATGGGAGCCCGTCGG
GCGGGCGCTTCGGACTCAAGCTCCTCGTCTCCAACAGCATGGCCGGCACT
CTCATCGGCAAGGGAGGCACGCGCATCTGCGAGATCAAGGACGAGTGCCT
CGCCGACATCAAAGTCACTCCCAATGGTCGGTTCTACCCGGGGACTCATG
AGCGCGTTGTTCTCGTGGTCGGGGAGCCCGGCAGCGTCCAGATGGCCTGC
GACCGCATCGTCACCACCATTTACACCGCCGCGGACACCAGCCTGGACAT
CACTCAGAGGGTGCTAATCCCCGACGCCGCCAGCGGCCTCATCATCGGCC
ATGACGGCGTACGCCTCGGAGACTTGCGCCAGCAGGCCGGCGTTGCCTCC
ATCCAGGTGTCCCCCAGGGACATGTGCACCGTGGCGGGCGAGCGCGTCGT
TACCCTCCAAGGCCCTATGTCCTCCGTCATCCATGGGCTGACCCTCATCG
TCGACCGCATGATGGAGGACACGACCGCCTCCCGCTACCAGAACATGAGC
ACCATTTACCGCGCCGTCCACCTGCACCTGCCCCCCTATGCCGTTCCGGG
GATGCAGCAGCAGCAGCAGCAGCATGACAACGGGGCCTCCCCCCGCCACC
CCAACCATCCCCGCCTGTCCCCGTCCTACCGTGGGCCTTCCCCCCACAGC
CATCACGACGACTACCATAGCCCCGGCGGTGTCGCGGGGTCCAGAACAGG
AAACCGCGGCGACTACGGCAAGGCCGTCAACGGTGCGGCGGCCCACTGGG
AGCTGGGATACGGGGGAGGGAACCACACTGCGCGGGAGCTGACCCCTCAT
GGGGGGGGCGGACGTGGCGGCGCAGGAATTGGGGCGGAGTACGTCCACCG
TAACATGTCCATGCCGACTGTGCACCCGCTGTCGGCGCCGCTGGGAAGCC
CGCTGAGCCACCAGCACCGCAGCCACACCGCCCCTGCCGCCGTAACCGGC
TCTTCGCAGCACTTCGGCGGCAGGCACCTCCGCCAGGAGCACGGCGCTGG
TAGCGCGGGCGCCGCCGGCCCGCGGGACTTCGACTTCAGCGAGAGGGACA
CAAGCAAGGTGCACCGCGGGGGAGGAGCGGGACCGATCGACCTAGACGAC
TACCGCCTTCGCGAGTACGACTCCCCTTCCCCGGCCGACCTAGGCAGCCG
GCCCGGTAGCCGGGAGGGCTACGTGCACCACTCGCCGCACCTCCCTGGGC
CTTCGCCGCGGGACCTGGACCACATGCACCAGCAGCAGCAGCAGCAGCAA
CACAGCCATGACGGGGGCCGCGGGTTCAGCCGCATGGGGGGTAGCAGCCC
TTACCCGCCAGGGTCCGCTGCGTCTCAGTCTGACTTTATGCCGCTCCAGC
GGGTACGCCAGCAGCAGCAGGAGTCGTCACCAGGCGGTAGCGGCATCCTG
GTGCACGAGGCACGCGCGGCGGCGGCGGCAGCTCAGCACAAGCAGCAGCA
GCAGCACCGGGGCCTCCACGACGGAGGCCTGCCATCCTCCTCGGCGCTTC
ACCGCACGTCCCCGGGCTCGGTACACGGCAGCGGCGGCGGCGGCGGCGGC
AGCACCGTGTTGGTAAGCCCGCCCCACGGTGGAGCTCTCCGTCAGGGGGG
GATGGTCGGCGGCAGCAGTAACTCGCACGGGTGCGACGCCTCCGGCCTCT
CCGGCATGTTCGAGGGCATGAACCTTAACTCTCCCCCGGGGCTCGCTCCC
CCGTCAACGTGCTCGCCGGGATCTCTGCAGCAGAAGCAGCAGCAGGGGCA
GAGCAGCGGGGCCAGCGGCGGTGGGGCCGGGTGCATCGTCCATGGCGAGC
TTCCGGTGCCGGATGCGGACGTCGGGATTATCCTGGGCAAAGGCGGTGCC
ACCGTGCGCGAGCTACAGCAGCTGAGCGGGGCAAAGATCATGATCGCCCG
CCGAAATGAGTTCATGCCGGGCACCAAGCACCGCCTTGTCACGCTTGCGG
GAGCACCTTTGGCGGTGAACATGGCTCGCTTCCTGATCATGCGCAAGATC
CAGACAGAGAAGGAGAAGCTGTGA
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