mRNA_Ecto-sp13_S_contig13195.2591.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13195.2591.1
Unique NamemRNA_Ecto-sp13_S_contig13195.2591.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: D8LD11_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD11_ECTSI)

HSP 1 Score: 766 bits (1978), Expect = 8.640e-270
Identity = 412/509 (80.94%), Postives = 426/509 (83.69%), Query Frame = 1
Query:    1 DDHLSGGDSSSAGGGDHHLQTLLSAFNADSNFVSNESDVQTYLSSPPQIASVSSASLASGGVCDCCGAALKVVGLDTAACARVRSALVELASETAYPTSPPPPALPLQAKRRQSSRLEYAYTGEGQGEMDRGGLGEAMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDD-ETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPKDGSRGLSVSN-GSRDSSADEDKGEKTSERERHKTPVQGSPSPLPIVCPSPAFTRDMQVLNKHAWHIPIGDGQDAEPSTKWLCINLAALVEEEEDGQAAELRPSEVIPRRKYRS 1521
            DDH+SG   SSAG GDHHLQTLLSAFNADSNFVS+ESDVQTY SSPP++ASVSSASLASGGVCDCCGAALKVVGLD  A ARVRSALV+LASETAYPT              QSSRL+YAY GEGQGEMDR GLGEAMGDLE+FAAWLEER REGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLER+GERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETID WR+R MLYSCANGTDDDLFWMYFTVSSDA AIEGE +VTNGDGG GLRENRQGYKPSNSNGVDGI+V  QEAT RG FAGGDD ET LGGTGE  GQ            S GDG AGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILP DGSRG S S+                    RH+ P QGS  PLPIVCPSPAFTRDMQVLNKHAWHIPIG+GQD EP TKWLCINLAALVEEEEDGQ AE RPSEVIPRRKYRS
Sbjct:  218 DDHVSG---SSAGSGDHHLQTLLSAFNADSNFVSSESDVQTYFSSPPRVASVSSASLASGGVCDCCGAALKVVGLDPEARARVRSALVKLASETAYPTPXXXXXXXXXXXXXQSSRLDYAYAGEGQGEMDRRGLGEAMGDLERFAAWLEERRREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERDGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDRWRRRQMLYSCANGTDDDLFWMYFTVSSDATAIEGEEEVTNGDGGAGLRENRQGYKPSNSNGVDGIYVGRQEATPRGGFAGGDDDETRLGGTGEGVGQXXXXXXXXXXXXSSGDGLAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPNDGSRGSSASSTXXXXXXXXXXXXXXXXXXXRHRPPEQGSSPPLPIVCPSPAFTRDMQVLNKHAWHIPIGEGQDGEPGTKWLCINLAALVEEEEDGQTAEQRPSEVIPRRKYRS 723          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: L1IRC9_GUITC (PRORP domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRC9_GUITC)

HSP 1 Score: 99.8 bits (247), Expect = 1.260e-19
Identity = 72/257 (28.02%), Postives = 109/257 (42.41%), Query Frame = 1
Query:  406 EAMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSA---LSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHF 1167
            +A   +  F  W+ E  ++   F+ VVDG NVAY  QN E G F   Q+D++  +L   GE+VLV+LP +Y++P +PN AR +   N S+A   ++ +++E ID W     L    +G++DD +WM  TV       EGE                                     T+R                                            VV+ND+MR+HR+ALL+P PF RW+ +++  F F
Sbjct:    9 QARESILNFLDWMRETSQQ---FSVVVDGPNVAYSKQNFETGCFSYHQIDIVVNKLREEGEKVLVLLPYKYVQPIIPNHARHQGHLNFSTAQHVVTGDEMEIIDRWNAEGCLKISPHGSNDDWYWMLSTVID-----EGE-------------------------------------TVR--------------------------------------------VVTNDQMRDHRLALLDPRPFLRWKTTRIIRFDF 176          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A7S4QEE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEE3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.090e-13
Identity = 83/340 (24.41%), Postives = 123/340 (36.18%), Query Frame = 1
Query:  421 LEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEG---EVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPKDGSRGLSVSNGSRDSSADEDKGEKTSERERHKTPVQGSPSPLPIVCPSPAFTRDMQVLNKHAWHIPIGDGQDAEPSTKWLCI 1431
            L  F  W+  R  EG  FT +VDG NVAY+GQ    G  +  Q+ LM   LE   E  LVI+P++Y       +++ R        L+ EDLE I+G+ ++  L+       DD +WM  +VS    +  G   +V   N DG         G +P                                                               ++SND+MR+H++ LLEP  F+RW  S +  +              SV N   + S            +     +QG+P+P P        + +       AWH P+ D  + E     LCI
Sbjct:   49 LSNFVDWVNTR--EGEPFTAIVDGANVAYFGQ----GHVDYLQLKLMVETLENMNENPLVIMPQKY------TNSKFRVSSKFLQKLTPEDLEIIEGFEEKGQLFKVPALCLDDYYWMLASVSDQTVSRNGTNIDVPTDNDDG------RWPGIRPM--------------------------------------------------------------LISNDQMRDHKLELLEPRLFRRWCSSHIVNY--------------SVKNNKTEISF--------FAADFFSREIQGNPTPAPFSLSGQEESGNWAT----AWHFPVSDWDNHER----LCI 278          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A7S0CK07_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK07_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.010e-13
Identity = 87/352 (24.72%), Postives = 131/352 (37.22%), Query Frame = 1
Query:  418 DLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPC--VPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAG-RLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPK---DGSRGLSVSNGSRDSSADEDKGEKTSERERHKTPVQGSPSPLPIVCPSPAFTRDMQVLNKHAWHIPIGDGQDAEPSTKWLCINLAALVEE 1455
            +L  FA WL  R  +G  FT +VDG NVAY GQN E G+F   Q+  +   L   GE  LVI+P +Y        N A+ RR       L+D + + +  +R    LY       DD +WM  +VS                            KP+   GVD + V                            +G E  ++   + +  + F G R  +++ND+MR+H++ LL+   F+RW    +  ++F A +     D   GLS                     +     +QG+PS                  +  AWH P+ D  D E      C+ +  L  E
Sbjct:  244 ELSTFADWLNVR--KGEPFTAIVDGANVAYSGQNFEQGRFNYHQIKFLTDALISMGENPLVIVPYKYTMKTFHTNNGAQKRR-----QILNDVEQDILFDFRDDGRLYRVPARCLDDYYWMLASVSDQ-------------------------LKPTGGKGVDMLHVSPNI------------------------EGNETDKSSNNINT--ERFPGTRPMLITNDQMRDHKLELLDTRLFRRWTSCHIVNYNFTAFVGNECVDNEIGLSTP-------------------DFFSREIQGNPSG-----------------DGTAWHFPVSDWGDNER----FCVRIPHLSSE 497          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A7S2EEA5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EEA5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.660e-12
Identity = 83/342 (24.27%), Postives = 123/342 (35.96%), Query Frame = 1
Query:  421 LEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEG---EVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPKDGSRGLSVSNGSRDSSADEDKGEKTSERERHKTPVQGSPSPLPIVCPSPAFTRDMQVLNKHAWHIPIGDGQDAEPSTKWLCINL 1437
            L  F  W+  R  EG  FT +VDG NVAY+GQ    G  +  Q+ LM   LE   E  LVI+P++Y       +++ R        L+ EDLE I+G+  +  L+       DD +WM  +VS    +  G   +V   N DG         G +P                                                               ++SND+MR+H++ LLEP  F+RW  S +  +              SV N   + S            +     +QG+P+P P         ++       AWH P+ D  + E     LCI +
Sbjct:  477 LSNFVDWVNTR--EGEPFTAIVDGANVAYFGQ----GHVDYLQLKLMVETLENMNENPLVIMPQKY------TNSKFRVSSKFLQKLTPEDLEIIEGFEAKGQLFKVPALCLDDYYWMLASVSDQTVSRNGTNIDVPTDNDDG------RWPGIRPM--------------------------------------------------------------LISNDQMRDHKLELLEPRLFRRWCSSHIVNY--------------SVKNNKTEISF--------FAADFFSREIQGNPTPAPFSLSG----QEESGNGATAWHFPVSDWDNHER----LCIRI 708          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A1Z5KPE3_FISSO (Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPE3_FISSO)

HSP 1 Score: 72.4 bits (176), Expect = 1.550e-9
Identity = 69/265 (26.04%), Postives = 105/265 (39.62%), Query Frame = 1
Query:  409 AMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTV----SSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPKDG 1191
            A   L QF+ WL++R      +T +VDG NVAY+G     G    SQV  + ++L+R GER LV++P++YL      S     G      LSD+D   ID  + +  +Y   +   DD +WM  +V    S+D A ++                                    ++ T +         TGL                             R  +++ND+MR+HR+ALLEP  F+RW    +  +       KDG
Sbjct:  400 AQEQLRQFSDWLKQRETS---YTAIVDGPNVAYFGH----GNVHYSQVWEVVQELQRLGERPLVVMPQKYLSRSFWLS-----GLGKVQELSDQDQAIID--KLKDCMYVVQSTCLDDYYWMIASVADQGSTDFATLQ------------------------------------KDQTFQ--------LTGL-----------------------------RPLLITNDQMRDHRLALLEPRLFRRWTSCHIVNYMLRTCEEKDG 577          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A1Z5J5P3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5P3_FISSO)

HSP 1 Score: 71.6 bits (174), Expect = 2.710e-9
Identity = 66/262 (25.19%), Postives = 103/262 (39.31%), Query Frame = 1
Query:  409 AMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAILPKDGS 1194
            A   L QF+ WL++R      +T +VDG NVAY+G     G    SQV  + ++L+R GER LV++P++YL      S     G      L+D+D   ID  + +  +Y   +   DD +WM  +V+   +                                D + V+  +             TGL                             R  +++ND+MR+HR+ALLEP  F+RW    +  +       KDG+
Sbjct:  403 AQEQLRQFSDWLKQRETP---YTAIVDGPNVAYFGH----GNVHYSQVWEVVQELQRLGERPLVVMPQKYLSRSFWLS-----GLGKVQELNDQDQAIID--KLKDCMYVVPSTCLDDYYWMLASVAEQGS-------------------------------TDFVIVQQDQMFPL---------TGL-----------------------------RPLLITNDQMRDHRLALLEPRLFRRWTSCHIVNYMLRTCEEKDGN 581          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: A0A813CPS8_9DINO (Metalloendopeptidase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPS8_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 9.520e-9
Identity = 42/138 (30.43%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  421 LEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKN----------PSSALSDEDLETIDGWRQRHMLYSCANGT----DDDLFWMYFTVSS 792
             ++F  WLEE+      F  V+DG NV +  QN+EGG F+ SQ+D + ++L   G RVL++L  ++LR     +   R+ +            SS  S E+ E   G  Q   ++   +G      DD +W++  +SS
Sbjct:  782 FKRFKKWLEEQ----PPFDIVIDGANVGFNNQNREGGLFQYSQIDAVIKKLRETGSRVLLVLHPKWLRADADRTVTKRKKRKLDQINLESGLGSSDESAEEHEDESGMLQLDAVHKSDSGERVWEGDDWYWLFAALSS 915          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: B7G3U7_PHATC (Ribonuclease P n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3U7_PHATC)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-8
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 1
Query:  391 RGGLGEAMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSS 792
            RG    A  +L +F+ WL E   EG  FT +VDG NVAY G     G    SQV L+  +LE  GE+VLV++P +Y+            G +    LS+ ++  ++G      +Y       DD +WM  +V++
Sbjct:  454 RGDSERARRNLFEFSEWLREH--EGEPFTAIVDGANVAYAGH----GNVHYSQVQLVVDKLEDMGEKVLVVMPSKYV-----GEKFYVAGIDSVQQLSEREVGIMNGLLDEGKMYQVPAACLDDYYWMLASVAN 576          
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Match: K0SEE8_THAOC (RNase NYN domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEE8_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 1.660e-7
Identity = 59/241 (24.48%), Postives = 93/241 (38.59%), Query Frame = 1
Query:  457 REGVHFTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALSDEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNGDGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTGEDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKRWRKSQVRGFHFPAIL 1179
            R G  FT ++DG NV YY Q+ + G+F   Q++ M   L   GE  LV++P +Y R       R          L  E++  ++   +   +Y       DD +WM  +VS  +++                    +G +   S   D  FV G +   RG F G                                    R  +V+ND+MR+H++ LLEP  F+RW    +  + F A +
Sbjct:  564 RTGRPFTAIIDGANVGYYMQSFDKGRFNYHQINYMVETLIDRGENPLVVVPGKYGRE------RFHSSHGQVQRLDREEVAIMNRLAEEGRMYRVPPRCLDDFYWMLASVSDQSSSSS------------------RGPEDGPS---DLSFVPGDDP--RGRFPG-----------------------------------TRPMLVTNDQMRDHKLELLEPRLFRRWYGCHIVNYSFTAFV 740          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13195.2591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD11_ECTSI8.640e-27080.94PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
L1IRC9_GUITC1.260e-1928.02PRORP domain-containing protein n=1 Tax=Guillardia... [more]
A0A7S4QEE3_9STRA7.090e-1324.41Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0CK07_9STRA8.010e-1324.72Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2EEA5_9STRA6.660e-1224.27Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5KPE3_FISSO1.550e-926.04Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1... [more]
A0A1Z5J5P3_FISSO2.710e-925.19Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A813CPS8_9DINO9.520e-930.43Metalloendopeptidase n=1 Tax=Symbiodinium sp. KB8 ... [more]
B7G3U7_PHATC2.630e-832.84Ribonuclease P n=2 Tax=Phaeodactylum tricornutum T... [more]
K0SEE8_THAOC1.660e-724.48RNase NYN domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13195contigEcto-sp13_S_contig13195:254..4649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score601.3
Seed ortholog evalue3.2e-169
Seed eggNOG ortholog2880.D8LD11
Model size1963
KEGG koko:K22390
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1140
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13195.2591.1prot_Ecto-sp13_S_contig13195.2591.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13195 693..4265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.4787312-UTR-Ecto-sp13_S_contig13195:253..6921681462706.4787312-UTR-Ecto-sp13_S_contig13195:253..692Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13195 254..692 -
1681462706.561317-UTR-Ecto-sp13_S_contig13195:4265..46491681462706.561317-UTR-Ecto-sp13_S_contig13195:4265..4649Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13195 4266..4649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.4962924-CDS-Ecto-sp13_S_contig13195:692..8631681462706.4962924-CDS-Ecto-sp13_S_contig13195:692..863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 693..863 -
1681462706.5075078-CDS-Ecto-sp13_S_contig13195:1328..15481681462706.5075078-CDS-Ecto-sp13_S_contig13195:1328..1548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 1329..1548 -
1681462706.515904-CDS-Ecto-sp13_S_contig13195:2050..24461681462706.515904-CDS-Ecto-sp13_S_contig13195:2050..2446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 2051..2446 -
1681462706.5244725-CDS-Ecto-sp13_S_contig13195:2655..27291681462706.5244725-CDS-Ecto-sp13_S_contig13195:2655..2729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 2656..2729 -
1681462706.5331085-CDS-Ecto-sp13_S_contig13195:3169..32831681462706.5331085-CDS-Ecto-sp13_S_contig13195:3169..3283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 3170..3283 -
1681462706.5421624-CDS-Ecto-sp13_S_contig13195:3659..37461681462706.5421624-CDS-Ecto-sp13_S_contig13195:3659..3746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 3660..3746 -
1681462706.5520418-CDS-Ecto-sp13_S_contig13195:4187..42651681462706.5520418-CDS-Ecto-sp13_S_contig13195:4187..4265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13195 4188..4265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13195.2591.1

>prot_Ecto-sp13_S_contig13195.2591.1 ID=prot_Ecto-sp13_S_contig13195.2591.1|Name=mRNA_Ecto-sp13_S_contig13195.2591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MDRGGLGEAMGDLEQFAAWLEERGREGVHFTTVVDGCNVAYYGQNKEGGK
FEISQVDLMARQLERNGERVLVILPERYLRPCVPNSARSRRGKNPSSALS
DEDLETIDGWRQRHMLYSCANGTDDDLFWMYFTVSSDAAAIEGEVKVTNG
DGGDGLRENRQGYKPSNSNGVDGIFVRGQEATLRGAFAGGDDETGLGGTG
EDGGQGGERARTRTGVGSLGDGFAGRLTVVSNDEMRNHRMALLEPVPFKR
WRKSQVRGFHFPAILPKDGSRGLSVSNGSRDSSADEDKGEKTSERERHKT
PVQGSPSPLPIVCPSPAFTRDMQVLNKHAWHIPIGDGQDAEPSTKWLCIN
LAALVEEEEDGQAAELRPSEVIPRRKYRS*
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mRNA from alignment at Ecto-sp13_S_contig13195:254..4649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13195.2591.1 ID=mRNA_Ecto-sp13_S_contig13195.2591.1|Name=mRNA_Ecto-sp13_S_contig13195.2591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13195:254..4649- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATCACTTGTCTGGCGGCGACAGCAGCAGCGCGGGTGGCGGTGACCA CCACCTCCAGACCCTTCTCTCCGCGTTCAACGCCGACTCCAACTTCGTCT CCAATGAGAGCGACGTCCAGACGTACTTGTCATCACCCCCCCAGATCGCC AGCGTCTCCTCGGCCTCTCTCGCCTCGGGGGGCGTGTGCGACTGCTGCGG GGCCGCTCTGAAGGTGGTAGGGCTAGACACCGCGGCGTGCGCGCGCGTTC GCTCGGCCTTGGTGGAGCTTGCGTCGGAGACGGCGTATCCCACATCGCCA CCGCCACCAGCGCTACCGCTGCAAGCCAAGAGGAGGCAGAGCTCTAGGCT TGAATACGCGTATACAGGAGAGGGGCAGGGGGAAATGGACCGAGGGGGGC TGGGGGAGGCAATGGGCGACCTGGAGCAGTTCGCCGCCTGGCTGGAGGAG AGAGGAAGAGAAGTGAGTTGGTCCCGCGCGGCACTTGAGAGCGGGGGTAC CGCGCGACTGTCTGTCGAGAGCGTGTCGACATGTGTCGATTCGTCAGGTA TTGTTTTTGCTCCCCGCCCAAGTGTATGTTTCGGTGGCAGCCGGAAAGTA TAGTGTCTGCGGCCACGCTGTATTTCTGTTTCCCTACCATTGCTTCGTTA TTTTTTTTGGCGTGTATTGAACACAGAGTATCTACTGTACAGGTTCTCGC TGCGCCGATCGTTGTGCCGATCGCCTCAGACATTTTTGCTACTTCACCGT TCAAAGGCCCTGCGTGATCGCAGCCCTGTGAGCGAGCGCATTGCTACATG CGCGGATGAGTCAAAAGCCCAAGAGCCCACCCCACAAAAAGTGGAGAGCA TCTCCTCTATATGGTTTGGTTTACCGACCCCGCTATCTCGTACACCGCGG CAGGGCGTACACTTTACGACCGTCGTGGACGGCTGCAACGTCGCCTACTA CGGCCAGAATAAGGAGGGGGGGAAGTTCGAGATCTCGCAGGTGAGCCCGC GGGGAAATCAGTCGTTTGCACGCGCAGTCGTGGGGTACGACAACGCGCAA ATCAAGAACTATCCTCGCACAGCTAGGAGTGACGTTGGCGCGCTTTTGGC CTTTAACTCTAGTCGGAAGGCTGCTAAGGTAGCTCCATGGCAGAGGAAAT GACGGTCGAATTTGGTCCTTTCATCCTCTCACCACCGCGAATTCTCTCTT TTCACGCGAGATTTGTGGCAGAACCTACCACCTACATGAAATACGCTGCT GTCGATATGGACACCAAGCCTTCTTGTTGTTCGTAGAAAGAGTACGGCGG ACCGTATCGGCAACAAAGAACATATCGTCTCGTGCTGAATGCCGTTGTGC CCGCGGCGGTCCGCAGGTAGACCTGATGGCAAGGCAGCTCGAGCGGAACG GGGAGCGGGTGCTGGTGATCTTGCCGGAGAGGTACCTTCGGCCGTGCGTG CCCAACTCCGCCCGGTCAAGACGGGGCAAGGTATCTCGTCCGTTTCTTTC GAAGTTTGTTCTTGTGACTTGACCGTGAGCGGCCGAAACACGTGCTTCTA GTTTGGTTTTCATTCAGGTGTTGTCCCTCGCTGGGACGTATTGAGTCTAT GCTGGGTTTGACGTCTTCTCCGTGCGGCTTTGGTGTCTTCTTGTGCATTT CGAAATAAAACGCTTTCGCAGTTGAGGCAACAAGCTCCGAGCAGTGCCCA GGGTGTATTTGGTGTACAAACAGTTGGCCGCCTGAAGTTTTCTCTTCTGT GGAGAATCACTGCCGCCTTTATGTTGTCGATCGACTGTTGTTGCTCTGTT ATGGTGTGTTAGCCCTTGTTCTCAACACATTCCTGCCCGTCGTGGTACAC GCTCCTGGAAAGCATGCGGCTCACGCTGTGCCTTTTGGCCCGGTCTGTTG AACCGTACATCCTGCCACAGAACCCTTCGTCAGCTTTGAGCGACGAAGAT TTGGAGACGATCGACGGGTGGCGGCAGCGACACATGCTCTACAGGTTCGC CTCTGGTCTCTTTTGTCGCGGGTAACAGCGGTCAGGCTGACGACTCCCAG CGGTCATTGCGGTATTGGTGATGTGTTACGATAGTCCGGCTGCGAACGTG CAGTTCTTAGATGCCTCTACCTTCTGTTCGTCAGGCGGCGGTTGAAGACT TGAATTACTTGCTGATTGCCGCTCTCACCCCCCCCTTTTTCTCGCTTGTT CAGCTGTGCAAACGGCACGGACGACGACCTCTTTTGGATGTATTTCACCG TCAGCTCTGACGCCGCTGCCATCGAAGGCGAGGTGAAGGTCACCAACGGC GATGGAGGCGACGGCTTACGCGAAAATCGGCAGGGGTACAAGCCATCCAA TAGTAACGGTGTAGATGGGATATTTGTAAGAGGGCAAGAGGCGACGCTAC GGGGGGCCTTCGCTGGTGGTGATGACGAGACGGGGTTAGGCGGCACCGGG GAGGACGGTGGCCAGGGGGGGGAACGCGCAAGGACAAGGACGGGGGTTGG TAGTTTGGGAGACGGTTTTGCGGGGCGATTGACCGTGGTGAGCAATGACG AGATGAGGAACCACAGGATGGCCCTGCTCGAGCCGGTTCCGTTCAAGCGG TGAGTTTTTGTAGTTGGTCATGAGAATCCATTTTAATTTCCAGCCTGATC TACCCCGAACCCCGACGGGTTTGTGTTGTGTGTGTCGGCCTCTCAATAAC TGGTCTCACCACCAAGGATTGGTGTGGCTTCGTCACAATCACGCCCGTCA CCAAAGTCCTTCTTGGAGTGAATGTTCGAAATGTCCCACATGATCCCGAC GATTTTTCATGTTTTCAACGGCTTGCTGGTTCCTAGCTTGCTCCGCATGA CGAGTGCGCAAGATGTCGTCTGTTTGTGCCTTTCGCTGTGCGCCTCGCCT GCGTGTCCCCTTGTGATCGCGATTTTGCACAGATGCGGTTATGAACAGAA CACCTCCAACCAGAGGTGGTTTCCTTTAGAGTTGGACGTGTGCAGCCCCG CCTGGCGTCAACGCGCGGCAGAAAACCACCGCACCTCCTTGCACATTCTC ACAAAACCAGCTCCCCACCTCTCGCAACCCCGCAATCCCGACTTTGATAA GGTGGAGGAAATCGCAGGTGCGCGGTTTCCATTTCCCGGCGATTTTACCA AAAGATGGCTCCCGCGGCTTAAGCGTGTCAAACGGGAGCCGCGACAGCAG TGCGGATGAGGATAAGGGGGAGAAGACTTCGGAACGAGAGAGACATAAAA CTCCCGTGCAAGGGTCTCCATCACCACTTCCAATCGTCTGCCCGTCTCCG GCTTTCACGAGGGACATGCAGGTGCGGAGAACTCAAGCGTTTCAGCTAAC AGGCTGGCTGAGTGTTTTATCTTAGGCTGGCTGGCTTGAGGGAGAATCAG GTCGTGGTGAGGGAGGGTCTTTCGACATGGGATATCGGAAACAGCAAGGC AGCCGTATTGGGGTCTGGTTGTCGAAATGAATGCTCGGGGCTGGAACCGT CAAGGCGACGTGATAGCCTTCGGGTGAAGACGCGACAAAATGCGTGGGAG CCTTCGTTCGCTTGGCGGCAACGGGCGGCTGGTGGCCCGCCAAAACTCGG CAATTCGACCTCGAACGTTCGAATTGCCTTCTTTCTTGAAGTCGGGAAGG GGGCAGCCAACACCATCTGTCCCTTGGCGATGATGGGAACACCAAGTTCA TGCACGCTCCTCAACAGCCATGAACACAGTGTTCGCACCCTTTTGAGCTG CCTCCGCCGCGACTGCACGTTTTTCTGGATCGGCAGGTGCTCAACAAGCA CGCGTGGCACATCCCCATCGGCGATGGACAAGACGCAGAGCCGAGCACCA AGTGGCTGTGCATAAACCTTGCCGCTCTCGTAGAGGAGGAAGAGGATGGC CAGGCGGCAGAGCTACGACCGAGCGAGGTTATTCCAAGACGAAAATACCG CAGCTGACGCGGGATGATGTACATAACTAAGGTCTTAACTATTTTGTTCG TCGTGTCAAAAGTAAATACGTGCACGGAGATGCGAACGAGGACTCCTCGT CAGAGGAGGCTCGTACCCAATAATGCACGCACCGGGGTCATTTGCAGCAA ACACGTGCGCTTCGTATCTGTGGTTGGGGCATGAGTTGGCCACTCAGACT TAAGCTTTTTCTCGTCGTATGGGAATAATCCGTATTTACCCGTTGGTTTC ACAACCCTGAAGGGTGGAAGAGAGAGCGGGGGAGTCCTCCGCGAACAGCT TTACAACGTACCAAAACTTGACTTAGGCGGAAGACCTACCAGGTAGTGTT GTTGGCCGGGTTTGCATGCGTGTTCTAGCCTTGCACAAGGACGATGCCCA GGAGCAGCACCCTGCCTCATCTGTGGAACCCACTTGGGAAGCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13195:254..4649-

>mRNA_Ecto-sp13_S_contig13195.2591.1 ID=mRNA_Ecto-sp13_S_contig13195.2591.1|Name=mRNA_Ecto-sp13_S_contig13195.2591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13195:254..4649- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGAGGGGGGCTGGGGGAGGCAATGGGCGACCTGGAGCAGTTCGC
CGCCTGGCTGGAGGAGAGAGGAAGAGAAGGCGTACACTTTACGACCGTCG
TGGACGGCTGCAACGTCGCCTACTACGGCCAGAATAAGGAGGGGGGGAAG
TTCGAGATCTCGCAGGTAGACCTGATGGCAAGGCAGCTCGAGCGGAACGG
GGAGCGGGTGCTGGTGATCTTGCCGGAGAGGTACCTTCGGCCGTGCGTGC
CCAACTCCGCCCGGTCAAGACGGGGCAAGAACCCTTCGTCAGCTTTGAGC
GACGAAGATTTGGAGACGATCGACGGGTGGCGGCAGCGACACATGCTCTA
CAGCTGTGCAAACGGCACGGACGACGACCTCTTTTGGATGTATTTCACCG
TCAGCTCTGACGCCGCTGCCATCGAAGGCGAGGTGAAGGTCACCAACGGC
GATGGAGGCGACGGCTTACGCGAAAATCGGCAGGGGTACAAGCCATCCAA
TAGTAACGGTGTAGATGGGATATTTGTAAGAGGGCAAGAGGCGACGCTAC
GGGGGGCCTTCGCTGGTGGTGATGACGAGACGGGGTTAGGCGGCACCGGG
GAGGACGGTGGCCAGGGGGGGGAACGCGCAAGGACAAGGACGGGGGTTGG
TAGTTTGGGAGACGGTTTTGCGGGGCGATTGACCGTGGTGAGCAATGACG
AGATGAGGAACCACAGGATGGCCCTGCTCGAGCCGGTTCCGTTCAAGCGG
TGGAGGAAATCGCAGGTGCGCGGTTTCCATTTCCCGGCGATTTTACCAAA
AGATGGCTCCCGCGGCTTAAGCGTGTCAAACGGGAGCCGCGACAGCAGTG
CGGATGAGGATAAGGGGGAGAAGACTTCGGAACGAGAGAGACATAAAACT
CCCGTGCAAGGGTCTCCATCACCACTTCCAATCGTCTGCCCGTCTCCGGC
TTTCACGAGGGACATGCAGGTGCTCAACAAGCACGCGTGGCACATCCCCA
TCGGCGATGGACAAGACGCAGAGCCGAGCACCAAGTGGCTGTGCATAAAC
CTTGCCGCTCTCGTAGAGGAGGAAGAGGATGGCCAGGCGGCAGAGCTACG
ACCGAGCGAGGTTATTCCAAGACGAAAATACCGCAGCTGA
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