mRNA_Ecto-sp13_S_contig13190.2587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13190.2587.1
Unique NamemRNA_Ecto-sp13_S_contig13190.2587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.070e-56
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 297
            ERRL+QRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP
Sbjct:  178 ERRLMQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 276          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.400e-38
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ERRL+++IPEISEVVQS+P GP+L +E +EKVLDGVRPFLSVAGG+I++ +L GV  +QP I LKMTG S+SL+S++MEIMQR+QR FM+S LR+++A
Sbjct:   83 ERRLIEKIPEISEVVQSMPEGPQLNMEEIEKVLDGVRPFLSVAGGAISVAALEGVGGMQPHIALKMTGKSSSLQSVKMEIMQRLQRHFMLSGLRIDWA 180          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2E835_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E835_TRICV)

HSP 1 Score: 129 bits (324), Expect = 5.280e-35
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ER L +RIPEI EVVQS+P GP L VE V+ VLDGVRPFL VAGG+I+ +S+ G  S+QPVITLKM GSSASL S+++EI QR+QR FMMS LRVE+A
Sbjct:  167 ERGLRERIPEIQEVVQSLPEGPPLEVEQVDVVLDGVRPFLQVAGGTIDCESIRGEGSVQPVITLKMEGSSASLNSVKLEIAQRMQRHFMMSGLRVEWA 264          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.410e-34
Identity = 61/98 (62.24%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ER+L ++IPEI EVVQS+P GPEL  E +  VLDGVRPFL VAGGSI+++S++G + +QP ITLKM G+SASLKS+++EI QR+QR FM++ LRV++A
Sbjct:   85 ERKLREKIPEIQEVVQSMPEGPELCEEEINVVLDGVRPFLQVAGGSIDVESISGENGLQPTITLKMEGASASLKSVKLEIAQRLQRHFMVAGLRVDWA 182          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.820e-34
Identity = 62/97 (63.92%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 291
            ERRL + IPEISEVVQ++P+ P LT E+V+ +L+G+RPFL VAGG I I+SLTGV SIQP + LKMTG+S+S++S+++EIMQRIQR FM+S LR++F
Sbjct:  147 ERRLKEAIPEISEVVQAMPDSPPLTEESVDGILEGIRPFLQVAGGKIEIESLTGVDSIQPQLVLKMTGASSSIQSVKLEIMQRIQRFFMISGLRIDF 243          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1G1H4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.840e-34
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ERRL +RIPEI EVVQ++P GP L  + +  VLDGVRPFL+VAGGSI+I S++G  S+QPVITL+MTG+SASL S+++EI QRIQR FMMS LR+ +A
Sbjct:  138 ERRLKERIPEIQEVVQAMPEGPPLNEDQINVVLDGVRPFLNVAGGSIDIASISGEMSVQPVITLEMTGASASLNSVKLEIEQRIQRHFMMSGLRITWA 235          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.270e-34
Identity = 61/95 (64.21%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRV 285
            ERRL +RIPEISEVVQ++P+ PEL+   VE VLDGVRPFL VAGGSI +Q ++GV  +QP+I LKM GSSA+L+S+++EIMQR+QR FM++ LR+
Sbjct:  147 ERRLKERIPEISEVVQAVPDAPELSEAGVESVLDGVRPFLQVAGGSITLQEISGVGGLQPMIVLKMEGSSATLQSVKVEIMQRLQRNFMVAGLRI 241          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC)

HSP 1 Score: 122 bits (307), Expect = 7.570e-33
Identity = 59/98 (60.20%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ER+L++RIPEI EVVQ++P+ P+LT + +  VLD VRPFLSVAGG+I+I S++G   +QP ITLKM GS+ASL S+++EI QR+QR FM+S +RVE+A
Sbjct:  130 ERKLMERIPEIQEVVQALPDSPDLTEDQINVVLDSVRPFLSVAGGTIDIDSISGEGGLQPTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEWA 227          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2K8U6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8U6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.030e-33
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ER L +RIPEI EV+QSIP GPEL  E +E VL+GVRPFL VAGGSI+I S+TG   +QP I LKM G+SA+L S+++EI+QR+QR FM+S LRV++A
Sbjct:  137 ERGLKERIPEIQEVIQSIPEGPELCEEQIEVVLNGVRPFLQVAGGSIDIVSITGEGGMQPTILLKMGGASATLNSVKLEIVQRLQRHFMLSGLRVDWA 234          
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 121 bits (303), Expect = 4.490e-32
Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
            ERRL +RIPEI EV+Q++P GP+L  + V  VLDGVRPFL VAGG+I+I  + G+ S+QP ITLKM G+SASL S+++EI QR+QR FM++ LRVE+A
Sbjct:  146 ERRLRERIPEIQEVIQAMPQGPDLCDDEVNVVLDGVRPFLQVAGGTIDIVVIEGIGSLQPTITLKMEGASASLNSVKLEIAQRLQRHFMVAGLRVEWA 243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE4.070e-5698.99NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA1.400e-3866.33NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2E835_TRICV5.280e-3568.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1H4I0_9STRA1.410e-3462.24Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2C848_9STRA1.820e-3463.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1G1H4_9STRA2.840e-3465.31Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9U202_9STRA7.270e-3464.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K0SKZ0_THAOC7.570e-3360.20NifU domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S2K8U6_9STRA9.030e-3363.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1D6Z8_CYCTE4.490e-3261.22Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13190contigEcto-sp13_S_contig13190:2857..4798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score186.0
Seed ortholog evalue8.4e-45
Seed eggNOG ortholog2880.D7FRC2
Preferred nameNFU3
Model size300
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Exons3
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
Ec32 ortholog descriptionNifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V)
Ec32 orthologEc-26_002610.1
EC6.1.1.6
Cds size300
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.2738361-CDS-Ecto-sp13_S_contig13190:2856..29791681462706.2738361-CDS-Ecto-sp13_S_contig13190:2856..2979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13190 2857..2979 -
1681462706.2847219-CDS-Ecto-sp13_S_contig13190:3682..37841681462706.2847219-CDS-Ecto-sp13_S_contig13190:3682..3784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13190 3683..3784 -
1681462706.2929657-CDS-Ecto-sp13_S_contig13190:4723..47981681462706.2929657-CDS-Ecto-sp13_S_contig13190:4723..4798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13190 4724..4798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13190.2587.1prot_Ecto-sp13_S_contig13190.2587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13190 2857..4798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13190.2587.1

>prot_Ecto-sp13_S_contig13190.2587.1 ID=prot_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQ
SLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP*
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mRNA from alignment at Ecto-sp13_S_contig13190:2857..4798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13190.2587.1 ID=mRNA_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13190:2857..4798- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGCGATTAGTGCAACGGATCCCGGAGATCAGCGAGGTCGTACAGTC TATCCCCAATGGCCCGGAGCTGACGGTGAGGTTACAGAGATGCGAGCGAG GGATGTGTGCTGGTGGTTGTCGGGTGGTATATGAAGGTGGAGGGCGCGAG CATCTTTTTTTCTTTTTTGCATGTCGTACATGTCCGCTCAGAGCATAACT GAGTAATTGTGCGCCCATCGGCGTGTTCATGCAGTGTGGAAGAAATCAGC TCAGTACTTCCCGGCCTGTTCGGTACCGGGTGGATGCGACGTCCTAGAGG GAGATAGCATTGACCTATGTTGCCCTTGGAGATATTTGGATGTGCTGCTC CAAAGCCGGGGTTTACTCTTCCTGCCACTTTTCCGCCCACAACCTCGGAA AAACATGTAGGAGATTATGGGTTTGAAATTCGTTTCAGGCCCGTTCCTCA TCGGGGATGATGTGAGTGCTCGGAAATCTTCAGGTCTAGGTTTATGGGCT CCAATGTGGTCCGTGCCCTTGTGGTACCTCCGACGTAAGGCAGGTTTTCC AAACTTTGGTTTCGACGCATAGAGAAAAGAAGAAATGCTTAGTCCGGTTC GTTTGTTTCCTTTGTTTTTCATTTTCATGGAGATGACTTGTTATTTTGTG CTTACTGTAGGGTGCGGGGAGGTTGGTTTCCACACCCCACCCACCCTGCT GTGCTTGTCGTCGAGATAGACGGCGGCGTGTGGGAGGGCTCAGTGTGGCT CTAGTTGCCACGTTGTAATGACACCCGTCTCCTCCACCGCGTACGTTTGG TTGGCACCACAAACTTATTTCAGAACGCCTCATTTTCGTGGCTTGTTGCT GTGCTTTCTTTCTGCGAAGCCAAGCACGCCAACAAACGAGATGTTGTGCT TCGATGGCTGGAGTAGCGCTGGGTACACTTTCCGCGTCTTCAGCGCTAAC TCTCGTCGCCCCCTCTCTTTTGCCTCTCCGTCACGAAAAAATATGTGTAT GCAATCGCATACAGGTTGAGAACGTGGAGAAGGTGCTGGACGGGGTACGG CCATTCCTGAGCGTGGCGGGGGGGAGCATCAACATTCAATCGCTCACCGG GGTGTCTTCGATTCAGGTAACTCATTTCCCGGTGAACATCAGGAGACACG CACCATTCATTGATAGGAGTGCATCGACATGAGCTTCGCCCGCCGATTAA CATCAAGTTACAGTTGTAGCAACATGAAGCACATTGTTATGGTCTTCGTT GCCGGCATGCAGCGTATTTTCACCTAACTATTGACATGGCACGGGACAGA AACCATTTTTTTTCCAATTTTCCGAAAGGAGGCCCGTCACTCAAGCATTG GGTGTTGACCGACACGCATTTGACTACAACATGCGATAGCTGGCGACTAC AAACGAGGGGGCAGCCCGCTCCAACGGACCGTGACACAAACGCTAGCTTG GGTTTGGTAGTGTGTGTATTATAGACTGAAGTCCACGCCCTCCAGCCCGA TCCATTCGGCCGGTGGGCACAGGTATGGGCCATGGCACTGCCTCAGAGAG AGCCTGTGATCAAATGTATAGCAGGTCGGGTCCGAAACATGACATGGACA AATGCCTCACTGAGGCCCAAAGCCGTACCCTTCTGTGCTCGGTGACAAAC AACGCAGCTCGTGTTATTCTTCTTTTCAGCATTCTCTTTTTTACACCTCA GTCTCCCTCACCTTCCCGATCGCGCCGAACACCTCACTGTGCGTGTTAGT TTTTTCTGGGTAGTCTGTGATGACCTCCCCCCCACCTTGTTTGTTGGCAC CGCTTGTCTTGTCTTGCAGCCGGTGATAACGCTGAAGATGACAGGGTCGA GCGCAAGCCTGAAGTCGATCAGGATGGAGATTATGCAGCGCATCCAGCGC GAGTTCATGATGTCTTCCTTGAGAGTAGAGTTCGCTCCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13190:2857..4798-

>mRNA_Ecto-sp13_S_contig13190.2587.1 ID=mRNA_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13190:2857..4798- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGCGATTAGTGCAACGGATCCCGGAGATCAGCGAGGTCGTACAGTC
TATCCCCAATGGCCCGGAGCTGACGGTTGAGAACGTGGAGAAGGTGCTGG
ACGGGGTACGGCCATTCCTGAGCGTGGCGGGGGGGAGCATCAACATTCAA
TCGCTCACCGGGGTGTCTTCGATTCAGCCGGTGATAACGCTGAAGATGAC
AGGGTCGAGCGCAAGCCTGAAGTCGATCAGGATGGAGATTATGCAGCGCA
TCCAGCGCGAGTTCATGATGTCTTCCTTGAGAGTAGAGTTCGCTCCATAA
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