mRNA_Ecto-sp13_S_contig13190.2587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE) HSP 1 Score: 183 bits (465), Expect = 4.070e-56 Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 297
ERRL+QRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP
Sbjct: 178 ERRLMQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 276
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.400e-38 Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ERRL+++IPEISEVVQS+P GP+L +E +EKVLDGVRPFLSVAGG+I++ +L GV +QP I LKMTG S+SL+S++MEIMQR+QR FM+S LR+++A
Sbjct: 83 ERRLIEKIPEISEVVQSMPEGPQLNMEEIEKVLDGVRPFLSVAGGAISVAALEGVGGMQPHIALKMTGKSSSLQSVKMEIMQRLQRHFMLSGLRIDWA 180
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2E835_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E835_TRICV) HSP 1 Score: 129 bits (324), Expect = 5.280e-35 Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ER L +RIPEI EVVQS+P GP L VE V+ VLDGVRPFL VAGG+I+ +S+ G S+QPVITLKM GSSASL S+++EI QR+QR FMMS LRVE+A
Sbjct: 167 ERGLRERIPEIQEVVQSLPEGPPLEVEQVDVVLDGVRPFLQVAGGTIDCESIRGEGSVQPVITLKMEGSSASLNSVKLEIAQRMQRHFMMSGLRVEWA 264
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.410e-34 Identity = 61/98 (62.24%), Postives = 82/98 (83.67%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ER+L ++IPEI EVVQS+P GPEL E + VLDGVRPFL VAGGSI+++S++G + +QP ITLKM G+SASLKS+++EI QR+QR FM++ LRV++A
Sbjct: 85 ERKLREKIPEIQEVVQSMPEGPELCEEEINVVLDGVRPFLQVAGGSIDVESISGENGLQPTITLKMEGASASLKSVKLEIAQRLQRHFMVAGLRVDWA 182
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.820e-34 Identity = 62/97 (63.92%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 291
ERRL + IPEISEVVQ++P+ P LT E+V+ +L+G+RPFL VAGG I I+SLTGV SIQP + LKMTG+S+S++S+++EIMQRIQR FM+S LR++F
Sbjct: 147 ERRLKEAIPEISEVVQAMPDSPPLTEESVDGILEGIRPFLQVAGGKIEIESLTGVDSIQPQLVLKMTGASSSIQSVKLEIMQRIQRFFMISGLRIDF 243
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1G1H4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.840e-34 Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ERRL +RIPEI EVVQ++P GP L + + VLDGVRPFL+VAGGSI+I S++G S+QPVITL+MTG+SASL S+++EI QRIQR FMMS LR+ +A
Sbjct: 138 ERRLKERIPEIQEVVQAMPEGPPLNEDQINVVLDGVRPFLNVAGGSIDIASISGEMSVQPVITLEMTGASASLNSVKLEIEQRIQRHFMMSGLRITWA 235
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA) HSP 1 Score: 125 bits (315), Expect = 7.270e-34 Identity = 61/95 (64.21%), Postives = 80/95 (84.21%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRV 285
ERRL +RIPEISEVVQ++P+ PEL+ VE VLDGVRPFL VAGGSI +Q ++GV +QP+I LKM GSSA+L+S+++EIMQR+QR FM++ LR+
Sbjct: 147 ERRLKERIPEISEVVQAVPDAPELSEAGVESVLDGVRPFLQVAGGSITLQEISGVGGLQPMIVLKMEGSSATLQSVKVEIMQRLQRNFMVAGLRI 241
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC) HSP 1 Score: 122 bits (307), Expect = 7.570e-33 Identity = 59/98 (60.20%), Postives = 81/98 (82.65%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ER+L++RIPEI EVVQ++P+ P+LT + + VLD VRPFLSVAGG+I+I S++G +QP ITLKM GS+ASL S+++EI QR+QR FM+S +RVE+A
Sbjct: 130 ERKLMERIPEIQEVVQALPDSPDLTEDQINVVLDSVRPFLSVAGGTIDIDSISGEGGLQPTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEWA 227
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S2K8U6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8U6_9STRA) HSP 1 Score: 122 bits (307), Expect = 9.030e-33 Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ER L +RIPEI EV+QSIP GPEL E +E VL+GVRPFL VAGGSI+I S+TG +QP I LKM G+SA+L S+++EI+QR+QR FM+S LRV++A
Sbjct: 137 ERGLKERIPEIQEVIQSIPEGPELCEEQIEVVLNGVRPFLQVAGGSIDIVSITGEGGMQPTILLKMGGASATLNSVKLEIVQRLQRHFMLSGLRVDWA 234
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE) HSP 1 Score: 121 bits (303), Expect = 4.490e-32 Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 294
ERRL +RIPEI EV+Q++P GP+L + V VLDGVRPFL VAGG+I+I + G+ S+QP ITLKM G+SASL S+++EI QR+QR FM++ LRVE+A
Sbjct: 146 ERRLRERIPEIQEVIQAMPQGPDLCDDEVNVVLDGVRPFLQVAGGTIDIVVIEGIGSLQPTITLKMEGASASLNSVKLEIAQRLQRHFMVAGLRVEWA 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13190.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13190.2587.1 >prot_Ecto-sp13_S_contig13190.2587.1 ID=prot_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp ERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQback to top mRNA from alignment at Ecto-sp13_S_contig13190:2857..4798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13190.2587.1 ID=mRNA_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13190:2857..4798- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13190:2857..4798- >mRNA_Ecto-sp13_S_contig13190.2587.1 ID=mRNA_Ecto-sp13_S_contig13190.2587.1|Name=mRNA_Ecto-sp13_S_contig13190.2587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13190:2857..4798- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |