mRNA_Ecto-sp13_S_contig13182.2582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13182.2582.1
Unique NamemRNA_Ecto-sp13_S_contig13182.2582.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE)

HSP 1 Score: 540 bits (1390), Expect = 9.670e-188
Identity = 285/333 (85.59%), Postives = 294/333 (88.29%), Query Frame = 1 
Query:   55 QVVRSEGAASAAPALERSDSATITEEAADNLVRRLEASDDEDDSDEEGCDTHGGAWRSLQYASYMAGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNATRAEMISRLGEPLVAAAPASGPSPPAVATQGAGGDGDGVVDQDASGIDEAAFVCLMVKVHYLIICPPVHPDVAHKNARNDWAKDNASGSPTMSYDLFVASIFEL---------------------------VDIWTETLEASEYDALAMMIAKGVTTEVDTPTETRPDVEDGRGSVAGSVASVTDEKKTSLER 972
            +VVRSEGA S APALERS+SATITEEA DNLVRRLEASDDE DSDEEGCDTHGGAWRSLQYASYM GMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFL+AVGMIWNATRAEMISRLGEP +AAAPASGPSPPA ATQGAGGDGDGVVDQDA GIDEAAFVCLMVKVHYLIICPPV+PD A+KNARNDWAKDNASGSPTMSYDLFVASIFEL                           VDIWTETLEASEYDALAMMIAKGVTTEVDTPT+TRPDVEDGRGSVAG +ASVTDE+K SL R
Sbjct:   27 KVVRSEGADSTAPALERSESATITEEATDNLVRRLEASDDEGDSDEEGCDTHGGAWRSLQYASYMTGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLAAVGMIWNATRAEMISRLGEPSIAAAPASGPSPPAAATQGAGGDGDGVVDQDAGGIDEAAFVCLMVKVHYLIICPPVNPDAAYKNARNDWAKDNASGSPTMSYDLFVASIFELANDLLKSLERSCSPMWTDCPHQEEGGVVDIWTETLEASEYDALAMMIAKGVTTEVDTPTQTRPDVEDGRGSVAGLMASVTDERKNSLAR 359
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BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 1.090e-152
Identity = 247/324 (76.23%), Postives = 253/324 (78.09%), Query Frame = 1 
Query:    1 IIMEDKIPMEEDRVETGAQVVRSEGAASAAPALERSDSATITEEAADNLVRRLEASDDEDDSDEEGCDTHGGAWRSLQYASYMAGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNATRAEMISRLGEPLVAAAPASGPSPPAVATQGAGGDGDGVVDQDASGIDEAAFVCLMVKVHYLIICPPVHPDVAHKNARNDWAKDNASGSPTMSYDLFVASIFELVDIWTETLEASEYDALAMMIAKGVTTEVDTPTETRPDVEDGRGSVAGSVASVTDEKKTSLER 972
            ++ME+KIPMEEDRVETGAQVVRSEGAAS APALERSDSATI EEA DNLVRRLEASDDE DSDEEGCDTHGGAWRSLQYASYMAGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNATRAEM SR+G                      GG+G GVVDQDA GIDEAAFVCLMVKVHYLIICPPV                                     DIWTETLEASEYDALAMMIAKGVTTEVD PTET PDVEDGRGSVAGSVASVT E+K S ER
Sbjct:    1 MVMEEKIPMEEDRVETGAQVVRSEGAASTAPALERSDSATIAEEAVDNLVRRLEASDDEGDSDEEGCDTHGGAWRSLQYASYMAGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNATRAEMASRMG---------------------GGGEGGGVVDQDADGIDEAAFVCLMVKVHYLIICPPV-------------------------------------DIWTETLEASEYDALAMMIAKGVTTEVDAPTETGPDVEDGRGSVAGSVASVTGERKKSPER 266
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BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Match: A0A7S2XUW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUW8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-8
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  658 LIICPPVHPDVAHKNARNDWAKDNASGSPTMSYDLFVASIFELVDIWTETLEASEYDALAMMIAKGVTTEVDTPTE 885
            L++ PPV  D A  NA +DW +D    +  MS + F  S+FELVDIWTET+E  EY  L  +I  GVT     PTE
Sbjct:    1 LMVPPPVDIDKALVNADDDWQRDVGPEAEEMSEEQFKDSMFELVDIWTETIELEEYCRLLDIITVGVTKICPPPTE 76
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BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Match: A0A7S2WVF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVF8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.850e-6
Identity = 40/165 (24.24%), Postives = 70/165 (42.42%), Query Frame = 1 
Query:  367 TLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNATRAEMISRLGEPLVAAAPASGPSPPAVATQGAGGDGDGVVDQDASGIDEAAFVCLMVKVHYLIICPPVHPDVAHKNARNDWAKDNASGSPTMSYDLFVASIFELVDIWTETLEASEYDALAMMIAKGVT 861
            T + +++ YS + Q+ RR+ KK P F   V  +W   + E    LG                                         ++ +  K+  L++ PP+      ++++ DWA+D A G   ++Y+ F  +IF+L DIWT+T E  +Y  +   +  GVT
Sbjct:   33 TKQVNLDLYSDESQMKRRMCKKDPHFKRLVDELWALVQDEATESLGM--------------------------------------GGYMKMNSKLIRLLMPPPLTESYIIQHSKEDWAQD-AQGKDRLTYNDFFQAIFQLTDIWTDTCEVEDYTNMLERMILGVT 158
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BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Match: A0A8K1C3T7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3T7_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 9.890e-6
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:  592 VDQDASGIDEAAFVCLMVKVHYLIICPPVHPDVAHKNARNDWAKDNASGSPTMSYDLFVASIFELVDIWTETLEASEYDALAMMIAKGVTTEVD 873
            VD +   +    +   M+++H LI+ P    D + +  R+DW +D   GS  + Y  F  S+FELVD+WT+T+EA +Y +L   I   +T +VD
Sbjct:  193 VDDNEEVLGFGKYEAFMLRLHRLIL-PEFDLDQSKELIRDDWTRDT-DGSDHLDYRFFHFSMFELVDLWTDTVEAEDYISLLYCIMHFLTFQVD 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13182.2582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K7X3_9PHAE9.670e-18885.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX47_ECTSI1.090e-15276.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XUW8_9STRA1.310e-847.37Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WVF8_9STRA3.850e-624.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8K1C3T7_PYTOL9.890e-635.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13182contigEcto-sp13_S_contig13182:580..3846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons5
Cds size969
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13182.2582.1prot_Ecto-sp13_S_contig13182.2582.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13182 580..3840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.785468-CDS-Ecto-sp13_S_contig13182:579..7681681462705.785468-CDS-Ecto-sp13_S_contig13182:579..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13182 580..768 -
1681462705.7977726-CDS-Ecto-sp13_S_contig13182:1310..14211681462705.7977726-CDS-Ecto-sp13_S_contig13182:1310..1421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13182 1311..1421 -
1681462705.8085055-CDS-Ecto-sp13_S_contig13182:2053..23531681462705.8085055-CDS-Ecto-sp13_S_contig13182:2053..2353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13182 2054..2353 -
1681462705.8196578-CDS-Ecto-sp13_S_contig13182:2859..31771681462705.8196578-CDS-Ecto-sp13_S_contig13182:2859..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13182 2860..3177 -
1681462705.8321946-CDS-Ecto-sp13_S_contig13182:3789..38401681462705.8321946-CDS-Ecto-sp13_S_contig13182:3789..3840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13182 3790..3840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.841581-UTR-Ecto-sp13_S_contig13182:3840..38461681462705.841581-UTR-Ecto-sp13_S_contig13182:3840..3846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13182 3841..3846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13182.2582.1

>prot_Ecto-sp13_S_contig13182.2582.1 ID=prot_Ecto-sp13_S_contig13182.2582.1|Name=mRNA_Ecto-sp13_S_contig13182.2582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
MEDKIPMEEDRVETGAQVVRSEGAASAAPALERSDSATITEEAADNLVRR
LEASDDEDDSDEEGCDTHGGAWRSLQYASYMAGMHHFVKEKHRAQGYLAA
ELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAV
GMIWNATRAEMISRLGEPLVAAAPASGPSPPAVATQGAGGDGDGVVDQDA
SGIDEAAFVCLMVKVHYLIICPPVHPDVAHKNARNDWAKDNASGSPTMSY
DLFVASIFELVDIWTETLEASEYDALAMMIAKGVTTEVDTPTETRPDVED
GRGSVAGSVASVTDEKKTSLER*
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mRNA from alignment at Ecto-sp13_S_contig13182:580..3846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13182.2582.1 ID=mRNA_Ecto-sp13_S_contig13182.2582.1|Name=mRNA_Ecto-sp13_S_contig13182.2582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13182:580..3846- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTATTATGGAAGATAAAATACCTATGGAGGAAGACCGAGTCGAAACAGG
GGCGCAGGTACGTATCGTACTTCCGCGTAGTAAAGTTGCATGTCTCGTAA
CGTGCACACCTTCCAAACCCGCGTGCGACGTCGGTATGTACAGTGTAGCA
TTCTCCGAGCCTGCTGTGATACAGCTGCAGCAGTAGTCTATTCTTCTTCT
GGCTGTAGGCTGACCAAGGCTGTTATATTGCTGATGCTGTTGATTCCGCT
GCCGACAGCGCTACCGATACTAAATCTCATTTCTGCAGGTGTTACTTAGA
CTACAGTATCTCCTTCTCGGGTTGCATGCCAAACGCTACGAAATACCACG
CACGTGCAGTAGTCTAGTGCTGTCCTGCTGCTTGATGCAGAAAATGCAGT
CAGCGCACGAACTTCAGAACGTTTGGTTTAGGGCGAGGCTGGGGTTCTTA
GTTCCTAGGGCTATGCTACAAATTACCGCTGGTATCGGTTTTAGTGTGGG
CTTATCTGGACTACGTGTGTGAAATTATACGGCGCACTCAGCATACTGCA
TGGGGTTCTGGACGACGTGTGTGAAAATTATATCGAGCGCATGAAGTCCC
AAAAAAAGAGTACTTTAGGTTATAGGGCTATTACAAGACAACCTCTTTTA
CGTCGCGTCGAAACGGAAGGTCGTTCGGTCGGAGGGTGCAGCTTCCGCCG
CTCCTGCTCTCGAGCGCTCAGACTCCGCGACGATCACCGAAGAAGCTGCC
GATAACCTCGTCCGCCGGCTGGAGGCCAGCGATGACGAAGACGATAGCGA
TGAAGAGGGGTGCGACACCCATGGTGGCGCGTGGAGGTCGCTCCAGTACG
CCAGCTACATGGCAGGTATGCATCATTTCGTCAAGGAGAAACATCGAGCT
CAGGGATACCTCGCCGCTGAGCTGGCCAAAGCCGACCACGAGATGGGCGA
AGGACAGCAGGACCCCACGAAGCGGCCCACCCTGGAGGTTCGAATTGCGA
CAAGCGTTCAATAGTAGAGCACCCAGAGCAGTCCGCCATTGTGCGTGGTC
CTTCGAAGCAGCCGATGTATACATGTTATAAGGGGTCGTCGCACGGTGCT
CTTACACTTTCCTTTCTGCTCGTGGAATTCGAAACATGTGGTGACATGAT
GAGCTCGGGTGTGCAAGAACCCCGACATGGTACGAACTGCGAGTGACCGA
TCTATCCGAACTGATGATATAAAGGACCTTGCAACCCTGGTGATCGTTCT
CCCTGGGGCTTAAAAAATCTTTGCCCCTCCCCGCACAATTAAGGCTGTTG
AAGGAGAAAGTGGCCGGATGGTCGTGCGTAGCTTCCCCCTACCTGGAAGA
AACCAAGGACAAACTTGGAAGAAAGCAAATTAAAGACTTCTCTACGAAGT
TCAGCACTCGAAGAAGGCGGGGGTTCCACCGCACATTGCACCTTCCACCC
GCACAAACCGCCGCATCACACGCGACAAACGTCGAATTTACAGGGCGATA
TCGAGCACTACTCGGTCCAAAAGCAAATCACTCGGCGCCTCAACAAGAAG
AGCCCCGGCTTCCTCTCCGCCGTCGGCATGATCTGGAACGCCACGCGCGC
GGAGATGATAAGCAGATTGGGCGAGCCATTGGTTGCCGCTGCGCCCGCAT
CGGGTCCTTCTCCTCCTGCCGTTGCTACGCAAGGGGCTGGTGGGGATGGG
GATGGTGTTGTTGACCAGGATGCTAGCGGGATTGACGAAGCTGCGTTCGT
GTGCCTGATGGTGAAGGTCCACTACCTCATCATTTGTCCTCCGGTGAGGG
TTGGTCTGGATCCATTTACAGTGCCATTCATGGGACGGGTTCTTTTCATC
GGTGCGTGTGTGCATGTCGTTGTTTCTCCAACAAATCGCGACGATATTCT
CACCATCTCTGGATATCTACGCTTTTTCATGCAATATTTATATAGTAACG
AAAACATTATCTCTCTTTAACACTCTACGCTATACGACCTGACGTTACAC
TCACAGCTACGCGCCTAAAGCCTCACTTGTAAGCATTTCCATTGGTGTTT
GTGTATCTGTCGGCGTTCTCCGGTACTTTTTTTGAGTGAAATCTCTTTCT
GGTGGATTCGTGGACGCCATGCTGACGACCGTGCTTAGGGTTGGCATGGT
TTTCCGTTGTTGGAGGACGCCTAATAGTACCATGCGAAATGCTTCTGGGG
GAACCAGCCATCGCACCTCTTTCGTTGATCACAGAGCAGCTGCCCGCAGC
GGGCAACAACACCATCCCGAAAGTCCACGCCACCAGATGATTCTTGCAGT
GGTAAAAACGACAACGACACCATAAACCCCAACCTTGGTGCTCTCTCTCT
GACCGCTGCCGGGTGCCCGCCTCCAGAACTCCTTCGCACTGTATCAACGA
ATGAATGCCATCCAATCACAAACAGGTTCACCCCGATGTCGCGCACAAGA
ACGCCCGCAACGACTGGGCCAAGGACAACGCCAGCGGGAGCCCGACTATG
AGCTACGATCTCTTCGTCGCGTCGATCTTCGAGCTGGCGAGTTGAGAGCG
AGCGGTATTCAGCTGTGCCGTAAGAAGAATGGCGGCGTTGTAAGGAATCC
GAGGGTAGATAGGAGGTTGCCGCTTGGTGTCGCCCCGGACAAGCTCGTGC
CTCGGGGGTTGCGAGGCCCAGCTTGCTCTCGGACGGAACGCGGTTGTTTT
TGTTGTCAAGGACGTGTGTGTGGACTGGATGACGACTAGATGATCGTGCT
CACCTATGTGGAGCGATTGCCCCCACCACCAAGAAGAAGGAGGCGTCGAA
AATACGGAGAAACCCTAGTCTCGGGAGGCATCTTTTCTTCGCCGTGTCGA
TCGCCTTTTGGTTTCCGCGGTCTGCTTTCTGTTGGGGCAGCAGTCGAGCT
TCGAAAGATTCGTCCAAACATAGCGGGCGCGGTCTCTCGGATCCTGACGG
AAACACGTGGTGCAATGATGGGCGATATTGGCCTGTTCTCCGAACCGTGT
CCTCGACAGATAGAGATGCCTAAGGCTTGCCCACGTTGTACTCAACCGCC
ATGTACTCAACCACTGCCACTGCTACAGGTCGACATCTGGACGGAAACGC
TGGAGGCATCAGAGTACGACGCGCTCGCCATGATGATCGCGAAGGGGGTC
ACGACGGAAGTGGACACTCCTACGGAGACGAGGCCCGACGTCGAGGATGG
GCGGGGCTCGGTGGCAGGGTCGGTGGCTTCAGTCACGGACGAGAAGAAGA
CTAGCCTAGAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13182:580..3846-

>mRNA_Ecto-sp13_S_contig13182.2582.1 ID=mRNA_Ecto-sp13_S_contig13182.2582.1|Name=mRNA_Ecto-sp13_S_contig13182.2582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13182:580..3846- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGATAAAATACCTATGGAGGAAGACCGAGTCGAAACAGGGGCGCA
GGTCGTTCGGTCGGAGGGTGCAGCTTCCGCCGCTCCTGCTCTCGAGCGCT
CAGACTCCGCGACGATCACCGAAGAAGCTGCCGATAACCTCGTCCGCCGG
CTGGAGGCCAGCGATGACGAAGACGATAGCGATGAAGAGGGGTGCGACAC
CCATGGTGGCGCGTGGAGGTCGCTCCAGTACGCCAGCTACATGGCAGGTA
TGCATCATTTCGTCAAGGAGAAACATCGAGCTCAGGGATACCTCGCCGCT
GAGCTGGCCAAAGCCGACCACGAGATGGGCGAAGGACAGCAGGACCCCAC
GAAGCGGCCCACCCTGGAGGGCGATATCGAGCACTACTCGGTCCAAAAGC
AAATCACTCGGCGCCTCAACAAGAAGAGCCCCGGCTTCCTCTCCGCCGTC
GGCATGATCTGGAACGCCACGCGCGCGGAGATGATAAGCAGATTGGGCGA
GCCATTGGTTGCCGCTGCGCCCGCATCGGGTCCTTCTCCTCCTGCCGTTG
CTACGCAAGGGGCTGGTGGGGATGGGGATGGTGTTGTTGACCAGGATGCT
AGCGGGATTGACGAAGCTGCGTTCGTGTGCCTGATGGTGAAGGTCCACTA
CCTCATCATTTGTCCTCCGGTTCACCCCGATGTCGCGCACAAGAACGCCC
GCAACGACTGGGCCAAGGACAACGCCAGCGGGAGCCCGACTATGAGCTAC
GATCTCTTCGTCGCGTCGATCTTCGAGCTGGTCGACATCTGGACGGAAAC
GCTGGAGGCATCAGAGTACGACGCGCTCGCCATGATGATCGCGAAGGGGG
TCACGACGGAAGTGGACACTCCTACGGAGACGAGGCCCGACGTCGAGGAT
GGGCGGGGCTCGGTGGCAGGGTCGGTGGCTTCAGTCACGGACGAGAAGAA
GACTAGCCTAGAGAGGTGA
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