mRNA_Ecto-sp13_S_contig13176.2576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13176.2576.1
Unique NamemRNA_Ecto-sp13_S_contig13176.2576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13176.2576.1 vs. uniprot
Match: A0A6H5KYK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.860e-7
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:  447 PRYRLRPDKFFKVLDILGSALFDADSREKAP*TMHM 554
            PRYRLRPDKFFKVLDILGSALFDADS  +    +H+
Sbjct:  102 PRYRLRPDKFFKVLDILGSALFDADSPTRTDTGLHI 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13176.2576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYK7_9PHAE4.860e-775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13176contigEcto-sp13_S_contig13176:1422..1976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.3437839-UTR-Ecto-sp13_S_contig13176:1421..14821681462705.3437839-UTR-Ecto-sp13_S_contig13176:1421..1482Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13176 1422..1482 +
1681462705.3675027-UTR-Ecto-sp13_S_contig13176:1878..19761681462705.3675027-UTR-Ecto-sp13_S_contig13176:1878..1976Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13176 1879..1976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.3570027-CDS-Ecto-sp13_S_contig13176:1482..18781681462705.3570027-CDS-Ecto-sp13_S_contig13176:1482..1878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13176 1483..1878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13176.2576.1prot_Ecto-sp13_S_contig13176.2576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13176 1483..1878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13176.2576.1

>prot_Ecto-sp13_S_contig13176.2576.1 ID=prot_Ecto-sp13_S_contig13176.2576.1|Name=mRNA_Ecto-sp13_S_contig13176.2576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MPPPLDRFSKLTCSTVHRVVVPKTWRGGYCCLIESFPTWCRLIHASSSVC
LGVDYRWMHKISHPLDRFYKARLLHDEEDAEVKRSVRFRKALDETVPTPT
FSAQGHCFFCRDISRYRASNIVQVWYFTSCA*
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mRNA from alignment at Ecto-sp13_S_contig13176:1422..1976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13176.2576.1 ID=mRNA_Ecto-sp13_S_contig13176.2576.1|Name=mRNA_Ecto-sp13_S_contig13176.2576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13176:1422..1976+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCTCCTGCGGTACTTTGCCGAACATGTTTGTTTTATGCGTATACCATA
CGTGACATAAGATGCCACCCCCCCTGGACCGATTTTCAAAGCTCACTTGC
TCCACGGTGCACAGAGTAGTGGTGCCAAAAACATGGCGGGGTGGGTACTG
CTGCCTCATCGAGAGCTTTCCAACATGGTGCCGCTTGATTCATGCGTCCT
CTTCGGTTTGTCTTGGCGTTGATTACCGTTGGATGCATAAGATATCACAC
CCCCTGGACCGATTTTACAAAGCTCGATTACTCCACGACGAAGAGGATGC
CGAAGTTAAAAGGAGTGTACGTTTTCGGAAAGCTCTTGACGAGACGGTTC
CTACGCCGACATTTTCGGCACAGGGTCACTGCTTTTTCTGCCGGGATATA
TCAAGATATCGAGCTTCCAACATCGTTCAGGTGTGGTATTTTACATCATG
TGCATAGTTCACGGGGCTTTCTCACGTGAATCGGCGTCGAAGAGGGCGGA
GCCAAGGATGTCCAGCACCTTGAAGAACTTGTCCGGGCGCAGGCGGTACC
TCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13176:1422..1976+

>mRNA_Ecto-sp13_S_contig13176.2576.1 ID=mRNA_Ecto-sp13_S_contig13176.2576.1|Name=mRNA_Ecto-sp13_S_contig13176.2576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13176:1422..1976+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCCCCCCTGGACCGATTTTCAAAGCTCACTTGCTCCACGGTGCA
CAGAGTAGTGGTGCCAAAAACATGGCGGGGTGGGTACTGCTGCCTCATCG
AGAGCTTTCCAACATGGTGCCGCTTGATTCATGCGTCCTCTTCGGTTTGT
CTTGGCGTTGATTACCGTTGGATGCATAAGATATCACACCCCCTGGACCG
ATTTTACAAAGCTCGATTACTCCACGACGAAGAGGATGCCGAAGTTAAAA
GGAGTGTACGTTTTCGGAAAGCTCTTGACGAGACGGTTCCTACGCCGACA
TTTTCGGCACAGGGTCACTGCTTTTTCTGCCGGGATATATCAAGATATCG
AGCTTCCAACATCGTTCAGGTGTGGTATTTTACATCATGTGCATAG
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