mRNA_Ecto-sp13_S_contig13170.2572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13170.2572.1
Unique NamemRNA_Ecto-sp13_S_contig13170.2572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: D8LU47_ECTSI (T-complex protein 1 subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU47_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 3.800e-169
Identity = 246/249 (98.80%), Postives = 248/249 (99.60%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            MSAPVMVLPVNTKRETGRAAQLGNI+AAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEML+VAEPILTRGVHPTQIVMGY RALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE
Sbjct:    1 MSAPVMVLPVNTKRETGRAAQLGNITAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLSVAEPILTRGVHPTQIVMGYARALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 249
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A836CR16_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR16_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 1.560e-134
Identity = 196/246 (79.67%), Postives = 220/246 (89.43%), Query Frame = 1 
Query:   10 PVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            PVMVLP+NTKRETGR AQLGNISAAKAV++IIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL GEMLA AEP+L + +HPTQIV GY  ALQ AL+ C A+++ +D+ +   LK+LV+AAVGTKFSHRWGD LV MAIDAV +V   VDGR EVDVKRY RVEK+PGGE++ C VLDGVMFNKDVTH++MRRRIE+PR+LLLDCPLEYKKGE
Sbjct:    5 PVMVLPINTKRETGRTAQLGNISAAKAVSEIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAAAEPLLLQHLHPTQIVRGYAHALQVALETCTAVSKVVDLKDRAALKELVEAAVGTKFSHRWGDILVGMAIDAVTKVVCDVDGRTEVDVKRYVRVEKVPGGELDQCRVLDGVMFNKDVTHARMRRRIESPRILLLDCPLEYKKGE 250
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A7S3GWY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWY3_9STRA)

HSP 1 Score: 387 bits (995), Expect = 2.020e-134
Identity = 190/249 (76.31%), Postives = 219/249 (87.95%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M+APVMVL  NTKRE+GR AQL NI AAKAVADIIRTTLGPRSMLKMLLDPMGGIV+TNDGNCILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL+GE+LA+AEP+L R  HPT IV G+ RALQTALD C+ ++ TIDV+N  +++++V +A+GTKFS RWGD++V +AI AVK+V T      EVDVKRY R+EKIPGGE+ +C VLDGVMFNKDVTH+KMRRRIENPR+LLLDCPLEYKKGE
Sbjct:    1 MNAPVMVLNANTKRESGRTAQLNNIQAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGEILAIAEPLLERNFHPTVIVRGFLRALQTALDTCNKISRTIDVNNTAEMREIVTSAIGTKFSSRWGDQMVDIAIKAVKKVVTKRGDYTEVDVKRYVRIEKIPGGELSECQVLDGVMFNKDVTHAKMRRRIENPRILLLDCPLEYKKGE 249
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A6S9KVF4_HETAK (T-complex protein 1 subunit gamma n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KVF4_HETAK)

HSP 1 Score: 374 bits (960), Expect = 4.270e-125
Identity = 187/249 (75.10%), Postives = 209/249 (83.94%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M APVMVL  NT+RE GR+AQL NI AAKAVADIIRTTLGPRSMLKMLLDPMGGIV+TNDGNCILRE+DV HPAAKSMIELSRAQDEEVGDGTTSVIIL GEMLA+AEP L++ +HPT IV GY RA+  ALD C  +A  +DV++  Q+ +LV+A +GTKFS RW  KLV MAIDAV +V    DGR EVD+KRY RVEKIPGGEM DC VLDGVMFNKD+TH KMR+ IENPRV+LLDC LEYKKGE
Sbjct:    1 MQAPVMVLNTNTQREHGRSAQLSNIQAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREIDVTHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLALAEPFLSQDIHPTVIVQGYMRAMTLALDVCKEIAMDVDVNDRAQMTQLVEATLGTKFSSRWSSKLVGMAIDAVLKVVKDDDGRKEVDIKRYCRVEKIPGGEMGDCRVLDGVMFNKDITHPKMRKSIENPRVMLLDCSLEYKKGE 249
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A7S2V850_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V850_9STRA)

HSP 1 Score: 362 bits (930), Expect = 2.880e-124
Identity = 183/251 (72.91%), Postives = 214/251 (85.26%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAV-KRVRTVVDGRV-EVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M APVMVL  NT+RETGR+AQ+ NISAAKAVADIIR+TLGPRSMLKMLLDPMGGIV+TNDGNCILREVDV HPAAKSMIELSRAQDEEVGDGTTSVIIL GE+LA++EP+L R +HPT IV G   ALQ  ++ C+ +A  ++V++  ++  LV+AAVGTKFS RW  K+V MA++AV K V+   DGR  EVD+KRYA+VEK+PGGE++DC VL GVMFNKDVTH KMRRRIENPR+LLLDCPLEYKKGE
Sbjct:    1 MQAPVMVLNANTQRETGRSAQISNISAAKAVADIIRSTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVTHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLALSEPLLNRNLHPTVIVRGLNLALQRCMEICNEIAREVNVEDTEEMFDLVNAAVGTKFSARWNKKMVGMALEAVLKIVKDPGDGRPKEVDIKRYAKVEKVPGGEVDDCKVLAGVMFNKDVTHPKMRRRIENPRILLLDCPLEYKKGE 251
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: W7TWK9_9STRA (T-complex protein 1 subunit gamma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWK9_9STRA)

HSP 1 Score: 370 bits (950), Expect = 1.710e-123
Identity = 189/256 (73.83%), Postives = 213/256 (83.20%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGR-------VEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M+APVMVL  NTKRETGR AQLGNI+AAKAV+DI+RTTLGPR+MLKMLLDPMGGIVITNDG+CILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL GEMLA AEP L R +HPTQIV GY++ALQ AL  C+ALA+ IDV++   L ++V A VGTKFS RWG  +V +A+D+V +V   V G         E DVKRY RVEKIPGGE+ D  V+DGVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGE
Sbjct:    2 MNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGE 257
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A7S2FP00_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FP00_9STRA)

HSP 1 Score: 370 bits (950), Expect = 3.630e-123
Identity = 183/250 (73.20%), Postives = 214/250 (85.60%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRV-RTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M APVMVL  NTKRETGR AQLGNI AAKAV+DIIRTTLGPRSMLKMLLDPMGGIV+TNDGNCILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL+GE+L +AEP L R +HPT IV GY +ALQ AL  C  +A  +D+D+  Q+  +V + +GTKFS R+GD++V++A+ AV++V +   DG+ EVD+KRY + EKIPGGE+ DC VL+GVMFNKDVTH+KMRRRIENPRVLLLDCPLEYKKGE
Sbjct:   30 MQAPVMVLNTNTKRETGRTAQLGNIMAAKAVSDIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGEILCLAEPFLMRNIHPTVIVSGYNKALQEALVVCKQMAVPVDLDDTKQMTDIVRSTIGTKFSSRFGDQMVNLALTAVRKVVKEGADGKKEVDIKRYVKTEKIPGGELSDCCVLNGVMFNKDVTHAKMRRRIENPRVLLLDCPLEYKKGE 279
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A7S2SP58_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP58_9STRA)

HSP 1 Score: 368 bits (944), Expect = 1.220e-122
Identity = 181/251 (72.11%), Postives = 212/251 (84.46%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRV--RTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M APVMVL   TKRETGR+AQLGNI+AAKAVADIIRTTLGPRSMLKMLLDPMGGIV+TNDGNCILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVI+LTGE L +AEP + R VHPT IV G+TRALQ +L+ C  +A  +D+++  Q+  +V +++GTKFS RWG +++ MA+ AV RV       G+ EVD+KRY + EK+PGGE+ DC VLDGVMFNKDVTH+KMRRRIENPR+LLLDCPLEYKKGE
Sbjct:    1 MQAPVMVLNTTTKRETGRSAQLGNIAAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIVLTGETLLLAEPFIVRNVHPTVIVSGFTRALQHSLEVCKRVAVKVDLEDRAQMMSIVQSSIGTKFSARWGAQMIDMALTAVLRVVHEDGGSGQKEVDIKRYVKTEKLPGGELSDCQVLDGVMFNKDVTHAKMRRRIENPRILLLDCPLEYKKGE 251
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A7R9U7E4_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7E4_9STRA)

HSP 1 Score: 366 bits (940), Expect = 1.110e-121
Identity = 180/249 (72.29%), Postives = 213/249 (85.54%), Query Frame = 1 
Query:    1 MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            M  P+MV+ VNT+RETGRAAQLGNI AAKAVADIIRTTLGPRSMLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL GEML++AEP L R +HPT +V GYTRALQ AL+ C  +A+ +D+++   +++LV  AVGT FS R+G+ ++ +A+DAV+RV T    R EVD+KRYA+VEKIPGGE+ DC VL+GVMFNK  TH+KMRRRIENPR+LL DCPLEYKKGE
Sbjct:   29 MQTPMMVMNVNTQRETGRAAQLGNIQAAKAVADIIRTTLGPRSMLKMLLDPMGGIVLTNDGHAILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLSMAEPFLERNIHPTLVVKGYTRALQVALNTCKEIAKHVDIEDTASIQELVKTAVGTTFSSRFGNIVIGLAVDAVRRVVTYSGDRPEVDIKRYAKVEKIPGGEIADCAVLNGVMFNKVPTHAKMRRRIENPRILLFDCPLEYKKGE 277
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BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Match: A0A2P4Y219_9STRA (T-complex protein 1 subunit gamma (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y219_9STRA)

HSP 1 Score: 353 bits (906), Expect = 1.750e-119
Identity = 179/240 (74.58%), Postives = 202/240 (84.17%), Query Frame = 1 
Query:   31 NTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRV-RTVVDGRVEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 747
            NTKRETGR AQLGNI AAKAV+DI+RTTLGPRSMLKMLLDPMGGIV+TNDGN ILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIIL GE+L VAEP L+  VHPT I+ G+ RAL  +++    LA TID++N   ++ LV +++GTKFS R G+ +  +A+DAV  V RT   GR EVDVKRYA+VEKIPGGE+ED  VL GVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE
Sbjct:   85 NTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVVAEPFLSHQVHPTVIIRGFNRALNASIEIAKNLARTIDIENKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRTTASGRKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE 324
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13170.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU47_ECTSI3.800e-16998.80T-complex protein 1 subunit gamma n=1 Tax=Ectocarp... [more]
A0A836CR16_9STRA1.560e-13479.67T-complex protein 1 subunit gamma n=1 Tax=Tribonem... [more]
A0A7S3GWY3_9STRA2.020e-13476.31Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6S9KVF4_HETAK4.270e-12575.10T-complex protein 1 subunit gamma n=1 Tax=Heterosi... [more]
A0A7S2V850_9STRA2.880e-12472.91Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TWK9_9STRA1.710e-12373.83T-complex protein 1 subunit gamma n=2 Tax=Monodops... [more]
A0A7S2FP00_9STRA3.630e-12373.20T-complex protein 1 subunit gamma n=1 Tax=Florenci... [more]
A0A7S2SP58_9STRA1.220e-12272.11T-complex protein 1 subunit gamma n=1 Tax=Rhizochr... [more]
A0A7R9U7E4_9STRA1.110e-12172.29T-complex protein 1 subunit gamma n=1 Tax=Pinguioc... [more]
A0A2P4Y219_9STRA1.750e-11974.58T-complex protein 1 subunit gamma (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13170contigEcto-sp13_S_contig13170:613..4664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score485.3
Seed ortholog evalue1.7e-134
Seed eggNOG ortholog2880.D8LU47
Preferred nameCCT3
Model size747
KEGG koko:K09495
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002199,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0005975,GO:0006457,GO:0006458,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006884,GO:0007154,GO:0007165,GO:0007166,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0008152,GO:0008361,GO:0009311,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009751,GO:0009826,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0009992,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022414,GO:0022607,GO:0023052,GO:0030104,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032502,GO:0032535,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0036211,GO:0040007,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043170,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043933,GO:0044085,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046677,GO:0046931,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055082,GO:0060255,GO:0060341,GO:0060560,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:0140096,GO:1901564,GO:1901700,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons7
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0364@2759
Cds size747
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13170.2572.1prot_Ecto-sp13_S_contig13170.2572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13170 613..4664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462704.975264-CDS-Ecto-sp13_S_contig13170:612..7371681462704.975264-CDS-Ecto-sp13_S_contig13170:612..737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 613..737 +
1681462704.9860096-CDS-Ecto-sp13_S_contig13170:1668..17441681462704.9860096-CDS-Ecto-sp13_S_contig13170:1668..1744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 1669..1744 +
1681462704.995348-CDS-Ecto-sp13_S_contig13170:2220..23171681462704.995348-CDS-Ecto-sp13_S_contig13170:2220..2317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 2221..2317 +
1681462705.0046277-CDS-Ecto-sp13_S_contig13170:2641..27001681462705.0046277-CDS-Ecto-sp13_S_contig13170:2641..2700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 2642..2700 +
1681462705.0164557-CDS-Ecto-sp13_S_contig13170:3441..35781681462705.0164557-CDS-Ecto-sp13_S_contig13170:3441..3578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 3442..3578 +
1681462705.0257745-CDS-Ecto-sp13_S_contig13170:3817..39561681462705.0257745-CDS-Ecto-sp13_S_contig13170:3817..3956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 3818..3956 +
1681462705.0354066-CDS-Ecto-sp13_S_contig13170:4550..46641681462705.0354066-CDS-Ecto-sp13_S_contig13170:4550..4664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13170 4551..4664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13170.2572.1

>prot_Ecto-sp13_S_contig13170.2572.1 ID=prot_Ecto-sp13_S_contig13170.2572.1|Name=mRNA_Ecto-sp13_S_contig13170.2572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
MSAPVMVLPVNTKRETGRAAQLGNISAAKAVADIIRTTLGPRSMLKMLLD
PMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILT
GEMLAVAEPILTRGVHPTQIVMGYTRALQTALDACDALAETIDVDNGPQL
KKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGRVEVDVKRYARVE
KIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGE
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mRNA from alignment at Ecto-sp13_S_contig13170:613..4664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13170.2572.1 ID=mRNA_Ecto-sp13_S_contig13170.2572.1|Name=mRNA_Ecto-sp13_S_contig13170.2572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13170:613..4664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCTCCCGTGATGGTCCTGCCCGTAAACACCAAGAGAGAAACCGG
GCGAGCAGCGCAGCTTGGAAACATCTCAGCCGCAAAGGCTGTAGCCGACA
TCATCAGGACCACCTTGGGACCCAGGTAAGCGCTGCCGGCGAGGGCCTGC
TAGTAGGGGAAACAGGGTTCGGTTGGCGGAGAAGGAGCGTACTTGGATTG
GTTGGTGCGTTGTTCGGCTACCGTTTTAGACAAGGGAAGAGGCTGAAATT
GTCGTGTGTTCTTTCTCACCAGCGTTTGAAAAGTTGGGTGTACCATCAGC
GATACCGAAGCAGTCGTGGTGACAACGTGATGTTTGCGAACGGATATGGA
TCCTGTCATTTGTATCCCCCATCCCATAGCTTGCCCCCCCGGGCCTGTGG
TGATCTTGCTTGAAGAAACCACACAGAAAGTTTTGTCGTTGCCAGTACAG
ATACCCACCGATCTTTGTCTCGAAACTCTGAGAAGTCACAATCGAAAAAG
CATCGACACAGCCCGCGTAGCTTACGGACAATGCTCTGGCTATCAGAGGA
GTAACAGGTGAAGCAGTCATACCCATGCAACCTGCCGTGCTGGTAGACGC
ATCCTGCAACCAGACAGCGTACCTCATAAACGCCAGCTACCAGTTGTGCG
TATGACGTTAAATACCACCCCCCCAGCATGACTATCTCAGCCCGCCTCTC
GCCTCTCCCTCGACAACCGGACGTGGCTGTGTTGGAATGTTACTGTCACT
GTTGCTTCTAGTGTTGAAATACGGAGCGAGAATCGGACTTGTGCGGCTAG
AAGGCGTTTTGAACAGGCCTCTCCGTATTACCATGTACCAGGTAGGGCCG
TCGATTGCGATCCCCGACACTTGCAGGAGTAGACACTCATAGAAGTTACT
GTATAACAGCAGTTGTTGCGCCGGTGTCGCACTTTTTTGTTCAACGACAA
CGACAACAACCCGTTCTCTGAAGAGTTTTACTGCTGGTTGTTAATACTCA
TCTTCTGCTCGGTCACATCGACGTGTTGTTACACACCTGGCGCTGCTGTT
GTGTAGGTCTATGCTGAAGATGCTCCTGGACCCCATGGGCGGAATCGTCA
TCACCAACGACGGCAACTGCATCCTTCGAGAGGTGAGCGACAGACAGAGA
GATGGTAAAACAAAGAACTTTTTGTGCTTGCATTGTACAACATGCAACAT
CTCCATAAGCGAAAGGTCGACAAACTCGCGTTCTTGATATGTCGGTATCA
CACCTCGCACAACATATCGTCGAGCGAAAGTGGATAGGTCGGAAGGTAGG
TCGACAATTAATGCCCTGGACCGAGGTAGGCTACACCGCTGGTGTTTCTG
TAGGTTACGATCAAGACACGTCCCAACCTTTATTTGCTATCTACCCCAAA
GCATGCTTGTGTCTCCGTGACGTATGCAGTGCCAGAGGGATGGGCACTGG
GGTAGCAGTAATGTTGACTATTTTTCCGGGAACTTTCGCTACATCTCAAT
TGCCGGCAGCCCGTCTTCGAACCTGCTGCCTGTGTCGATTGGCTGAAGGG
GTTGATTGGGTCATCACTCAGTGCTGAAACTGCTGTCGCTAAACGATCCC
CTCTCAAGGTTGACGTGGCCCACCCGGCAGCCAAGAGCATGATCGAGCTT
AGCCGTGCTCAGGATGAGGAAGTCGGAGATGGTACCACTTCTGTCATCAT
TCTGAGTGAGTTGTTGGTAGTTAAGGTGATTGTGGTGTTGTTGTGTGGTT
GTTGCTGCTGCTCATGTCGTCGTTGAAGGTAGCTGTAGTTCTGTCTGCGC
TTATCTTGAGTAAGCAGTGCTACCGGTCATCGACGAGGAACATCATAAAA
GGTTTACCCTCTGATGCGTTTTATATTTATTAATAAAAAATGTTGATCTG
CTTGGTGACGATTGCGTTGTGTGTTGTAATCGCTTCTCTTACATATACCT
GTGATGCCTATCATCGTTTGTGTCTCCCCATCTGACCTGTCCCTTAAATT
TTGGTGAACACTCTTGGCGTTGTTTACAGCCGGAGAGATGCTTGCGGTGG
CGGAACCCATCCTCACCAGGGGCGTGCACCCGACGCAGGTACCCTACAAT
ACACTAGACACATGAGTTGATTGAGCGTACTTTTTCTGTGCCCTTTTTGT
CCCTTTCGTCACGTGGCTGCGGTGCCTCGTTCTGTAACCTCCTGTGCCCC
CCATCGCAAAACAGCAGTATTAATATTCACAGCATCGTCTTTTCGACCCA
CGCGTGGATGCAGAAAATCTGTGTTGCATGCCGCCCTTCAGCAGTAACGT
ATCTTACTGTCATTCCAGACGTCCGCTGCTCCCGGGATCCTCTGTGCGCT
TTGCCGCACGCTATGTAACGTAGAAGTACGGGCGATCGCATGGGTGTAGT
GCAATCGGTTTTTTCAGGTCAATTGCTCCACAACCACAAAGATGTTCGGG
TAGGGTGCGCGAATCTCGACTGACAAGCAGGAAACTTCTGGCTCGCTCTC
TCGATGAGATTCTCCGTGGGATCTGGCGATGAGATTTCCTGCAAGTAGAG
CGCCCTTCTCGGCGTTGGCAGCTTCTTACCTCGCATGTGGAGTAGCGCAT
GTGGAGTAGCCGACCTCAAAAAAACGATCGTCGCACCCCACGCCTGTGCG
TTCAGCCTCGTGTTCATGATACAAATGTAAAATTAGACTGTATGTATTCC
TTTTGTTACTCTAAATTGTCAACACTACTGTCACTAGTAGAGAGGCCCCG
CCAAGCACTCACTGACCGTGTTTCTTTTGGTACATGTTGTCCGTTTTTTT
GTGCCTGGCTCTGGCGGGGGGGTCCGTAGATCGTGATGGGGTATACGCGC
GCCCTGCAGACGGCGCTAGACGCTTGCGATGCCCTGGCAGAGACGATCGA
CGTGGACAATGGCCCGCAGCTGAAGAAGCTGGTAGACGCCGCTGTGGGAA
CCAAGTTTTCGCACAGGTGCGCTGTCTGCTATGTTGTTACCATTAAAACA
GGTCTCAATTTTAAGTTGGTGCTGCTGCTGCTGAGTTGCTGTGCGACTGG
GGTGACGAAGTTGACATGGATGGCTCTTGACACCGTGGGTTTATTCTCTG
GTGATGATGCACGAACAACAACGCACGTTGTCAAGTCCAAATGTCCTGGC
ATGTGATCATTGTGGTCTGAAAGTCCTTATCTTGTTTTATGTGACCTGCC
GACAGGTGGGGCGACAAGTTGGTGTCGATGGCGATCGATGCGGTGAAGCG
TGTCCGAACGGTGGTGGATGGGCGCGTGGAAGTGGACGTGAAGCGCTACG
CGAGGGTGGAGAAGATCCCCGGGGGAGAGATGGAGGACTGCACGGTAAGA
TGCTGCGGTCATTGCATACAGCACCACCATAACTGTAACTCGAGCGGCAG
TTTGTATTTTGCGTCTTTTTACATGTCTACAAATGATCTATCTTTTTGTT
TGAGTAAGGAAGGATTCTACAGTCATCCAGACGTACGCGTGGGAGAGATT
GGAAGACTGCACGGTAAGATGCATGCGTAACTCGAGCGCTAAAGATCTGT
AGTACGATCATGATAATACTCCTGTATGTGTAGATACACGATACAGGTAG
ATGTGCCTGTCGGGAGAGAATGAAGGACTGCATGGTAACTCGAGGCAGCG
ATTCTAGTAGAGGCAAGAGCACTTTCACACGCGGGGTGCAGATAGACCAT
GCACTACTTGAATGCTAAGATGCCCCACAGAGAAAGAAAGTAAGAAACAA
ACGTACCTCACTCAAACTTTTAGTTCAGTGGTTACGCTTTGCAACTTTAT
TCCAGTGGCCAGCGGATTGGAGATTGGGTTGGGTTTGGGAGTGTGAATGA
CGTGTCTGACCTTATCTTTCCATTCTCTCACTACAACCCTGTTTTCAAAC
CCTTTTTTTTGCCTTGGCTTGGTCCTCAACGTCGGCAGGTGTTGGACGGG
GTTATGTTCAACAAGGACGTCACGCACTCGAAGATGAGGAGAAGGATCGA
GAACCCGCGCGTGCTGCTGCTCGACTGTCCGCTAGAGTACAAGAAGGGAG
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13170:613..4664+

>mRNA_Ecto-sp13_S_contig13170.2572.1 ID=mRNA_Ecto-sp13_S_contig13170.2572.1|Name=mRNA_Ecto-sp13_S_contig13170.2572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13170:613..4664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCTCCCGTGATGGTCCTGCCCGTAAACACCAAGAGAGAAACCGG
GCGAGCAGCGCAGCTTGGAAACATCTCAGCCGCAAAGGCTGTAGCCGACA
TCATCAGGACCACCTTGGGACCCAGGTCTATGCTGAAGATGCTCCTGGAC
CCCATGGGCGGAATCGTCATCACCAACGACGGCAACTGCATCCTTCGAGA
GGTTGACGTGGCCCACCCGGCAGCCAAGAGCATGATCGAGCTTAGCCGTG
CTCAGGATGAGGAAGTCGGAGATGGTACCACTTCTGTCATCATTCTGACC
GGAGAGATGCTTGCGGTGGCGGAACCCATCCTCACCAGGGGCGTGCACCC
GACGCAGATCGTGATGGGGTATACGCGCGCCCTGCAGACGGCGCTAGACG
CTTGCGATGCCCTGGCAGAGACGATCGACGTGGACAATGGCCCGCAGCTG
AAGAAGCTGGTAGACGCCGCTGTGGGAACCAAGTTTTCGCACAGGTGGGG
CGACAAGTTGGTGTCGATGGCGATCGATGCGGTGAAGCGTGTCCGAACGG
TGGTGGATGGGCGCGTGGAAGTGGACGTGAAGCGCTACGCGAGGGTGGAG
AAGATCCCCGGGGGAGAGATGGAGGACTGCACGGTGTTGGACGGGGTTAT
GTTCAACAAGGACGTCACGCACTCGAAGATGAGGAGAAGGATCGAGAACC
CGCGCGTGCTGCTGCTCGACTGTCCGCTAGAGTACAAGAAGGGAGAG
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