mRNA_Ecto-sp13_S_contig13169.2569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13169.2569.1
Unique NamemRNA_Ecto-sp13_S_contig13169.2569.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13169.2569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13169contigEcto-sp13_S_contig13169:3031..4007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size293
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462704.7326145-CDS-Ecto-sp13_S_contig13169:3030..32441681462704.7326145-CDS-Ecto-sp13_S_contig13169:3030..3244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13169 3031..3244 -
1681462704.7439628-CDS-Ecto-sp13_S_contig13169:3930..40071681462704.7439628-CDS-Ecto-sp13_S_contig13169:3930..4007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13169 3931..4007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13169.2569.1prot_Ecto-sp13_S_contig13169.2569.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13169 3031..4007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13169.2569.1

>prot_Ecto-sp13_S_contig13169.2569.1 ID=prot_Ecto-sp13_S_contig13169.2569.1|Name=mRNA_Ecto-sp13_S_contig13169.2569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
VCRFEQDLQEVLAVALILKQRDRKARQATRQRESKGRRRTPTCIEVIEGG
GIKQGTNEGEPRPRDIFKRGTRVRWGGNRAGYPPSGAGKSSPHSIRP
back to top

mRNA from alignment at Ecto-sp13_S_contig13169:3031..4007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13169.2569.1 ID=mRNA_Ecto-sp13_S_contig13169.2569.1|Name=mRNA_Ecto-sp13_S_contig13169.2569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=977bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13169:3031..4007- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGTCGATTTGAGCAAGACCTTCAGGAGGTACTCGCAGTGGCTCTCAT
CCTGAAGCAGCGCGATCGCAAAGCCAGGTATCGCGGCGGAGTGCGTGTGG
AAGGATTACCACGGGGGCAGGGGGTGCGCGTGCCTTGTGGTACAGACGTT
GTCGTTGCTCTTGTCATTGCTGTTGCCATGAGCGATGTTTTTATAACACC
ATGGCTGCCCTCTGTTCTCATTGGTCGTACACTGGTCTTACTTGGTAGAC
GTAGCTCATCATACCAAGCAGGCCAGAAAAGACGATCAACTGCCTCCTCC
CGGTTCAAACGCCGCCTCTGCTGGTAAGTTCTACGCATAATTCGCCAAAG
CAGAGCTATCAGGCGGTGTACTGGATACGACCAGGGGAGACGTCAGTCAC
TTGGACAAAATTGCGTAGTGCACGCTAAAATCGAACCTAAACTCAAGCCG
ACCGACAACAGACTACGCCACTACGACTTGCGCAATTGCCGTGCGAAGTA
GAAACACCGATCGACGTGGTGCAATCACGACGAAAAAAGGGACAAGACAC
GAGCCGTCTTCAATTCTGCCACGATATGCTCTTTACCCCGCCATCTCTCG
CTGTTGGGAAAGGATCCAGTGGTACTGTGTTGTGCTCGACCTTGCTGATG
CAACCTTAAACCGTAAGTCGTCGTAAAATCGCTGATATCAAGCCTCTGAC
GAAACCGACTCGTGAATCGTGAGTAATGCCGGTGCAATACGCGGATTTAC
TTGCCGCCTCTAGGCAAGCTACACGCCAGCGAGAGAGTAAGGGGCGACGA
CGTACCCCAACGTGCATTGAGGTAATCGAAGGGGGGGGTATTAAACAAGG
AACGAACGAGGGAGAACCACGCCCCCGTGACATATTCAAGAGAGGGACGA
GGGTCAGGTGGGGGGGCAATCGTGCCGGGTACCCCCCCAGCGGGGCGGGT
AAATCATCCCCTCATTCGATACGCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13169:3031..4007-

>mRNA_Ecto-sp13_S_contig13169.2569.1 ID=mRNA_Ecto-sp13_S_contig13169.2569.1|Name=mRNA_Ecto-sp13_S_contig13169.2569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13169:3031..4007- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGTCGATTTGAGCAAGACCTTCAGGAGGTACTCGCAGTGGCTCTCAT
CCTGAAGCAGCGCGATCGCAAAGCCAGGCAAGCTACACGCCAGCGAGAGA
GTAAGGGGCGACGACGTACCCCAACGTGCATTGAGGTAATCGAAGGGGGG
GGTATTAAACAAGGAACGAACGAGGGAGAACCACGCCCCCGTGACATATT
CAAGAGAGGGACGAGGGTCAGGTGGGGGGGCAATCGTGCCGGGTACCCCC
CCAGCGGGGCGGGTAAATCATCCCCTCATTCGATACGCCCC
back to top