mRNA_Ecto-sp13_S_contig13163.2566.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13163.2566.1
Unique NamemRNA_Ecto-sp13_S_contig13163.2566.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13163.2566.1 vs. uniprot
Match: A0A6H5KJ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ65_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.880e-8
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  142 AAKKQVEVYVGNVPHGTLAPDLAKFL 219
            AAKKQVEVY+GNVPHGTLAPDLAKFL
Sbjct:    4 AAKKQVEVYIGNVPHGTLAPDLAKFL 29
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13163.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ65_9PHAE6.880e-896.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13163contigEcto-sp13_S_contig13163:702..1617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462704.4899328-CDS-Ecto-sp13_S_contig13163:701..7791681462704.4899328-CDS-Ecto-sp13_S_contig13163:701..779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13163 702..779 -
1681462704.5021272-CDS-Ecto-sp13_S_contig13163:1476..15931681462704.5021272-CDS-Ecto-sp13_S_contig13163:1476..1593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13163 1477..1593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462704.5112078-UTR-Ecto-sp13_S_contig13163:1593..16171681462704.5112078-UTR-Ecto-sp13_S_contig13163:1593..1617Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13163 1594..1617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13163.2566.1prot_Ecto-sp13_S_contig13163.2566.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13163 702..1593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13163.2566.1

>prot_Ecto-sp13_S_contig13163.2566.1 ID=prot_Ecto-sp13_S_contig13163.2566.1|Name=mRNA_Ecto-sp13_S_contig13163.2566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MYSEHARWMLDSASQRRRSTEEYQRLKAEGSPGQRQFDEAAKKQVEVYVG
NVPHGTLAPDLAKFL
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mRNA from alignment at Ecto-sp13_S_contig13163:702..1617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13163.2566.1 ID=mRNA_Ecto-sp13_S_contig13163.2566.1|Name=mRNA_Ecto-sp13_S_contig13163.2566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=916bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13163:702..1617- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGCACACACACGGGGCGTTCCGATGTATTCCGAGCATGCCCGTTGGAT
GCTGGACTCTGCGAGTCAGCGGCGGAGGTCCACCGAAGAGTATCAGCGTT
TGAAGGCCGAGGGAAGCCCTGGGCAACGCCAGTTTGATGAGGTGAGTAAA
CCTAATCTTTTTAGCCATACCACTGCTGATGTCATAAACGTAAATTACTT
TGGGCCTCGTGCATTGGAATCTGTACCACAAGACTAACCTACTGAGAGTG
CGTCCACCGAATGGCGCGGTCAATACAGCTGCGTCCCTAATTCCGCATTT
TCCCCAACAAACACTTCGAAACGCATGAAGCCTTCAAACAGGGATCTCAC
AAGAGCCCCTTGGGGACGTGGAGAGGCCTATACCTCGAGTGTTGGGTGAG
AGATTCACGGGGTTTCCCAGCCCAAGATTCTTCACACCAAGCAGGGGGGG
AGATTGGAGTTGTAACGACGAGAAACCCCTTTTAAATCTCAGGCATTGAG
GCTCGCATCGGCAGGCGGTGTCGACGGCAACTGACAAATGATGCGCCTGG
AGACTTAGATAGATCTGGTCGGGTGACCCTGGTTGTTTGACCACGCCTCT
GATATTTTCGCAAAAGAGGGAGTGGATTCTCCCCTTTGAAGGGCACAAGT
CTGTTTGGTTCATCCTGGGTGACCTTTGAACAATGGTTGTGGTCAAACGC
TGTTGCGCATATATGGTGGAAACTGCTTCTGATACAACAGCTTTGTGTGA
AACCAGACCGAAGCCAAGTGCGGAACTCTCAACCACTCGGACGTTTCTTG
TTGCAACTACCACATCTCAATTCGGCCATCAACACCAGGCGGCGAAGAAG
CAGGTGGAAGTATATGTCGGCAATGTTCCCCACGGTACCCTGGCGCCAGA
CCTGGCCAAGTTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13163:702..1617-

>mRNA_Ecto-sp13_S_contig13163.2566.1 ID=mRNA_Ecto-sp13_S_contig13163.2566.1|Name=mRNA_Ecto-sp13_S_contig13163.2566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13163:702..1617- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTCCGAGCATGCCCGTTGGATGCTGGACTCTGCGAGTCAGCGGCG
GAGGTCCACCGAAGAGTATCAGCGTTTGAAGGCCGAGGGAAGCCCTGGGC
AACGCCAGTTTGATGAGGCGGCGAAGAAGCAGGTGGAAGTATATGTCGGC
AATGTTCCCCACGGTACCCTGGCGCCAGACCTGGCCAAGTTCCTC
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