mRNA_Ecto-sp13_S_contig13101.2534.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13101.2534.1
Unique NamemRNA_Ecto-sp13_S_contig13101.2534.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 4.740e-160
Identity = 236/243 (97.12%), Postives = 237/243 (97.53%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            FEPPAVPTEQFRATMDTLSE SC AYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSD RIAEHYDSELVVDGEAKELGTELRRRLGET  EILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQ+L DALILTVTGIAGGMRNTG
Sbjct:  707 FEPPAVPTEQFRATMDTLSEASCAAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDARIAEHYDSELVVDGEAKELGTELRRRLGETAGEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQHLHDALILTVTGIAGGMRNTG 949
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 431 bits (1109), Expect = 1.450e-142
Identity = 212/243 (87.24%), Postives = 225/243 (92.59%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            FEPPAVP+E++R TMDTLSEVSCEAYR+IVRKD RFVPYFRTATPELELG LNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVAST EG  +L  MY  WPFF+TNIDLFEMI AKSD +IAE+YD+ELV D EAK+LG ELRRRLGET  EILKVSENPELIA+NKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKF SPAEEQ+LQDALI+TVTGIAGGMRNTG
Sbjct:  707 FEPPAVPSEKWRETMDTLSEVSCEAYREIVRKDARFVPYFRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTPEGKADLRNMYEQWPFFETNIDLFEMIAAKSDVQIAENYDAELVADAEAKDLGAELRRRLGETAGEILKVSENPELIAYNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFSSPAEEQHLQDALIITVTGIAGGMRNTG 949
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 405 bits (1041), Expect = 1.930e-132
Identity = 201/243 (82.72%), Postives = 213/243 (87.65%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            FEPPAVP+ ++R TMD LS VSCEAYR IVRKDPRFVPY RTATPELELG LNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALA VAST EG  +L  MY  WPFF TNIDLFEMI+AKSD RIAEHYD+ELV   EAKELG+ELRRRL ET  EILKVSEN ELI+ NKLLRWQLALRNPYLDPVN+MQAHILHRLRN KFG+P EE+ LQDAL +TV GIAGGMRNTG
Sbjct:  707 FEPPAVPSPEWRGTMDRLSAVSCEAYRGIVRKDPRFVPYLRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALADVASTAEGKADLRGMYEDWPFFATNIDLFEMIVAKSDPRIAEHYDNELVAGAEAKELGSELRRRLKETAGEILKVSENKELISSNKLLRWQLALRNPYLDPVNIMQAHILHRLRNDKFGAPEEEKQLQDALAITVKGIAGGMRNTG 949
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 8.670e-127
Identity = 191/243 (78.60%), Postives = 212/243 (87.24%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            FEPPAVP+ ++R TMD LSEVSCEAYRDIVR+D RFVPYFRTATPELELG LNIGSRPAKRRPTGGVE+LRAIPWVFSWTQTRLNLPAWLGV DAL+ +AST +G   L +MY  WPFF TNIDLFE I+AKSD  IAEHYD ELV D +AKELG ELRRRL ET+AEILKVSE P LIA+N++LRWQL LR PYLDPVNVMQAHILHRLR+G FGS  EEQ+L+DAL++T+ GIAGGMRNTG
Sbjct:  708 FEPPAVPSGKWRKTMDRLSEVSCEAYRDIVRRDERFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWTQTRLNLPAWLGVADALSELASTDDGKATLRSMYDEWPFFATNIDLFETILAKSDVDIAEHYDKELVSDAKAKELGAELRRRLQETSAEILKVSERPGLIAYNEVLRWQLVLRKPYLDPVNVMQAHILHRLRSGAFGSLEEEQHLKDALVITIKGIAGGMRNTG 950
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 300 bits (767), Expect = 2.190e-92
Identity = 149/237 (62.87%), Postives = 181/237 (76.37%), Query Frame = 1 
Query:   19 PTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            P + +R TM TLS+VSC  YR+IVR DP+FV YFR +TPELELG LNIGSRPAKRRPTGGVE+LRAIPWVF+WTQTRLNLPAWLGVGDAL+AVA  K+    L  MYA WPFF+TNIDLFEMI+AK+   IA  YD +LV   + K+LG ELRR +  T   +L VS N  LI  N +L+WQL LRNPY+DP+N+MQA +L +LR   + +  E+  L+DAL+LT+ GI+ GMRNTG
Sbjct:  676 PPQAWRDTMATLSDVSCTKYRNIVRHDPKFVGYFRASTPELELGALNIGSRPAKRRPTGGVETLRAIPWVFAWTQTRLNLPAWLGVGDALSAVA--KKDKATLQEMYAQWPFFRTNIDLFEMILAKASPSIAAIYDDQLVHTPDEKKLGEELRRDMAATVDAVLAVSGNTTLIEKNIMLQWQLLLRNPYVDPLNIMQAALLRKLRTEDYANDEEKHLLEDALVLTINGISAGMRNTG 910
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A4D9DCS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCS6_9STRA)

HSP 1 Score: 279 bits (714), Expect = 4.210e-92
Identity = 136/229 (59.39%), Postives = 172/229 (75.11%), Query Frame = 1 
Query:   43 MDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            M  LS + CE YR  VR+DPRFVPYFR ATPE ELG  NIGSRP KRRP GGVE+LRAIPWVFSWTQTRL+L AWLGVG+AL AV ++ E    L+ MY  WPF  TN+DL +MI+AK+D  IAE+YD  LV D E K+LG ELR +L +TT  +LK+S   +L  +N +L+W + LRN Y+DP+N++QAH+L RLR  ++ S  E+Q LQDAL++T+ GI+ GMRN+G
Sbjct:    1 MKELSSIGCEHYRATVRQDPRFVPYFRAATPEQELGSANIGSRPQKRRP-GGVETLRAIPWVFSWTQTRLHLSAWLGVGEALEAVMASPEHASTLAEMYKHWPFLHTNMDLVDMILAKADKEIAENYDHLLVSDPEQKKLGIELRAKLEDTTKAVLKLSGEQKLQQYNPVLQWAIVLRNAYVDPLNILQAHVLKRLRTEEYKSEEEKQRLQDALVVTINGISAGMRNSG 228
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A7S3H8Y1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Y1_9STRA)

HSP 1 Score: 275 bits (704), Expect = 8.740e-88
Identity = 141/250 (56.40%), Postives = 176/250 (70.40%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQY-------LQDALILTVTGIAGGMRNTG 729
            F P       + A MD LS +SC+AYR IVR+DPRFVPYFRT TPELEL GLN+GSRP KR P GGVESLRAIPWVF+WTQTRLNLP WLGVG+AL     T   +  L  MY  WP+F+T IDL EM++ KSD+ IA +YD++LV D E+  LG ELR +L ET   +L++S +P L + N +L   LA+RNPY+DP+NV+QA +L RLR G      E++Y       LQDAL++T+ GIA GMRN+G
Sbjct:  189 FTPRPAIKPTWAAAMDRLSVISCDAYRAIVREDPRFVPYFRTTTPELELAGLNVGSRPGKRNPKGGVESLRAIPWVFAWTQTRLNLPTWLGVGEALNKELKTDPAL--LKEMYQDWPWFRTFIDLLEMVLVKSDSAIAANYDAQLVTDSESLALGKELRAKLDETAQALLEISGHPSLQSHNSVLLNSLAVRNPYVDPLNVIQAELLKRLRQGD----VEQRYTIEERATLQDALLITINGIANGMRNSG 432
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: W7TGA1_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGA1_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.110e-87
Identity = 141/243 (58.02%), Postives = 179/243 (73.66%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            F+ P  P E +R  M  LS + CE YR  VR+DPRFVPYFR ATPE ELG  NIGSRP KRRP GGVE+LRAIPWVFSWTQTRL+L AWLGVG+AL AV ++ E    L+ MY  WPF  TN+DL +MI+AK+D  IAE+YD  LV D E K+LG ELR +L +TT  +LK+S   +L  +N +L+W + LRN Y+DP+N++QAH+L RLR  ++ S  E+Q LQDAL++T+ GI+ GMRN+G
Sbjct:  720 FQEPVNPPEAWRQVMKELSSIGCEHYRATVRQDPRFVPYFRAATPEQELGSANIGSRPQKRRP-GGVETLRAIPWVFSWTQTRLHLSAWLGVGEALEAVMASPEHASTLAEMYKHWPFLHTNMDLVDMILAKADKEIAENYDHLLVSDPEQKKLGIELRAKLEDTTKAVLKLSGEQKLQQYNPVLQWAIVLRNAYVDPLNILQAHVLKRLRTEEYKSEDEKQRLQDALVVTINGISAGMRNSG 961
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BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A482T9M5_9ARCH (Phosphoenolpyruvate carboxylase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T9M5_9ARCH)

HSP 1 Score: 265 bits (678), Expect = 7.430e-80
Identity = 132/243 (54.32%), Postives = 175/243 (72.02%), Query Frame = 1 
Query:    1 FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG 729
            F  PA+  E ++  M+ ++++SC  YR +VR + RFVPYFRTATPE EL GLN+GSRP+KR P GGV+SLRAIPWVFSWTQTRLNLPAWLGVG+AL      KE  E +  M A WP+F+T ID+ EMI+ KS+T+IAE+YD +LV D +++ LG ELR ++  T   +L+VS +P L A N +L   L +RNPY+DP+N++QA +L RLR     S  E   LQD L++T+ G+A GMRN+G
Sbjct:  612 FNRPAIKPE-WKEMMEKMADISCGVYRGVVRGEERFVPYFRTATPESELAGLNVGSRPSKRNPQGGVDSLRAIPWVFSWTQTRLNLPAWLGVGEALTTCY--KEHPEVMKDMAANWPWFRTLIDMLEMILVKSETKIAENYDKQLVSDAKSQALGQELREKMKFTADAVLQVSGSPYLQANNPMLLRSLLVRNPYVDPLNIIQAEVLKRLRTTSGLSEPERTVLQDTLLITINGVANGMRNSG 851
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Match: A0A7S0CA55_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA55_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.080e-78
Identity = 129/249 (51.81%), Postives = 171/249 (68.67%), Query Frame = 1 
Query:   19 PTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGEAKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVNVMQAHILHRLRNGKFGSPA------------EEQYLQDALILTVTGIAGGMRNTG 729
            PTE++R  M+ LSE SC AYRDIVR D RFVPYFR ATPE+EL  LNIGSRPAKR+ +GGVESLRAIPW+F+WTQTR  LP WLGVG+A++ V  + +  + L  MY  W  F+T IDL EM+++KS+  I EHY++ LV D E+K LG E+RR+   T   +L+++ + EL   N+LL+  L +RNPY+D +N++Q   L RLR G  G               E++ L+D L++T+TGIA GM NTG
Sbjct:  141 PTEEWREMMNRLSETSCRAYRDIVRGDERFVPYFRAATPEMELADLNIGSRPAKRKASGGVESLRAIPWIFAWTQTRSMLPTWLGVGEAISEVLQSDDA-DKLRIMYRDWDSFRTTIDLVEMVLSKSEPSITEHYENMLVSDSESKALGVEVRRKHEVTEQAVLELTGHKELSESNELLKRLLKVRNPYVDCLNMLQVETLKRLR-GVTGDDTIEPVTCDNNEKDEKELLKDTLLITITGIANGMGNTG 387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13101.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN1_ECTSI4.740e-16097.12Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A097IUC8_9PHAE1.450e-14287.24Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
A0A0A0V6T3_SACJA1.930e-13282.72Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A097IUD4_9PHAE8.670e-12778.60Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A835YNR8_9STRA2.190e-9262.87Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A4D9DCS6_9STRA4.210e-9259.39Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3H8Y1_9STRA8.740e-8856.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TGA1_9STRA1.110e-8758.02Phosphoenolpyruvate carboxylase n=1 Tax=Nannochlor... [more]
A0A482T9M5_9ARCH7.430e-8054.32Phosphoenolpyruvate carboxylase n=1 Tax=archaeon T... [more]
A0A7S0CA55_9STRA2.080e-7851.81Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13101contigEcto-sp13_S_contig13101:121..3976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score477.2
Seed ortholog evalue4.4e-132
Seed eggNOG ortholog2880.D8LTN1
Model size732
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
EC4.1.1.31
Cds size732
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13101.2534.1prot_Ecto-sp13_S_contig13101.2534.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13101 121..3976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462701.9453838-CDS-Ecto-sp13_S_contig13101:120..1921681462701.9453838-CDS-Ecto-sp13_S_contig13101:120..192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 121..192 +
1681462701.9585967-CDS-Ecto-sp13_S_contig13101:589..7601681462701.9585967-CDS-Ecto-sp13_S_contig13101:589..760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 590..760 +
1681462701.9691238-CDS-Ecto-sp13_S_contig13101:1213..13401681462701.9691238-CDS-Ecto-sp13_S_contig13101:1213..1340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 1214..1340 +
1681462701.9784412-CDS-Ecto-sp13_S_contig13101:1897..19421681462701.9784412-CDS-Ecto-sp13_S_contig13101:1897..1942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 1898..1942 +
1681462701.9891748-CDS-Ecto-sp13_S_contig13101:2518..25821681462701.9891748-CDS-Ecto-sp13_S_contig13101:2518..2582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 2519..2582 +
1681462701.9989517-CDS-Ecto-sp13_S_contig13101:3189..33191681462701.9989517-CDS-Ecto-sp13_S_contig13101:3189..3319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 3190..3319 +
1681462702.0086167-CDS-Ecto-sp13_S_contig13101:3853..39761681462702.0086167-CDS-Ecto-sp13_S_contig13101:3853..3976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13101 3854..3976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13101.2534.1

>prot_Ecto-sp13_S_contig13101.2534.1 ID=prot_Ecto-sp13_S_contig13101.2534.1|Name=mRNA_Ecto-sp13_S_contig13101.2534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
FEPPAVPTEQFRATMDTLSEVSCEAYRDIVRKDPRFVPYFRTATPELELG
GLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTRLNLPAWLGVGDALAAVA
STKEGVENLSTMYATWPFFKTNIDLFEMIIAKSDTRIAEHYDSELVVDGE
AKELGTELRRRLGETTAEILKVSENPELIAFNKLLRWQLALRNPYLDPVN
VMQAHILHRLRNGKFGSPAEEQYLQDALILTVTGIAGGMRNTG*
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mRNA from alignment at Ecto-sp13_S_contig13101:121..3976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13101.2534.1 ID=mRNA_Ecto-sp13_S_contig13101.2534.1|Name=mRNA_Ecto-sp13_S_contig13101.2534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13101:121..3976+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGAGCCCCCGGCTGTCCCCACGGAACAGTTCCGGGCAACGATGGACAC
TCTTTCGGAGGTATCCTGCGAGGTGCGTATGCTAGCCTTAAGATTCGGCG
CCGTCGTTGATGCCGCCATCCCATTGAGCAGACCACCGACGCCGTTTGTC
GTTGTTGCTTACAAGCCTGAGGGTTAGGGTTAAATTTCGGCGAGTGTTAG
GCGCCTGCGGACACGCCGTCTTGTGGCTGCTCCCCGCCTTGTTTTTATTA
GCGTGTTGAGCGTGCTCTTGGAAGCCCGTGGCGTGGGGCTACGCGGACGG
GGAGACAAACGATGGACGAAAGCAACACAACCTTTTTCACCACGAAACCG
GGACCTTTCGCCACGTTGCCAGGACCGCCCCTTTCTCGCCACGTTGCTCT
CATCCGTGGGCTTCCATCTCGCTTTTCTGATGTCCGATGTGTAAAAAACG
TCCGCACGCTCGGCGCCAGGCGTACCGCGACATCGTGAGGAAAGACCCTC
GGTTCGTGCCCTACTTCAGGACGGCCACCCCCGAGCTGGAGCTGGGGGGC
CTCAACATCGGATCACGGCCTGCGAAGAGGAGGCCTACTGGCGGAGTAGA
GAGTCTGCGGGCTATCCCTTGGGTGTTCTCCTGGACTCAGGTAGGATTGG
ACGATCCACCCGCGAGGAGAGCTGGTGTGCATTTTAACCAGCAACGCATT
GCGGAAATATTCCAAGTTGGGTCACTGCCAAGCCTGCCATTTTTTCAACC
GAGGTCTCTCTTTTGCCGTGCTTGATTTCATAGTGAGTGGTGTCATTGGA
TACCAGCTTGCGCTAGTTTTTTCTCAGAGCGGTGAGAGTTTTCCTGGCAA
CTCCTAAAAATGCTGACGGAAGCAGAATGCACCATGTGTCAAAAATGTCA
CCCGCCTCCGCCGTTGTCCCCCCGTCCCTTGACAACGGCAAACCAGAAAA
AGGTCTGTTCGCGCCTCTTCTACAAGCTCATTTTTACCATTCGTCTCATG
GGGATCCTCTTGTACTCCCATCCGACGCTTAAGTGCCCTGTTTGTCTAAG
CTGCTGTCCCACTCCTTGTCTTGTTGTCGATGTGCTCGCGCAGACGAGGT
TGAACCTGCCGGCGTGGCTCGGCGTGGGCGATGCCCTCGCAGCAGTGGCT
TCAACCAAGGAGGGCGTCGAGAACTTGAGCACCATGTACGCGACCTGGCC
CTTCTTCAAGACCAACATCGGTACGCTGCTGCTGCTCCTGCTGCTGTAGC
TCAGCAGTCAGGCCTGTCTGTCTTAGTGTTCTGGAAACGTTCGTTTTTCT
GCCGTAGTTGGCGGTGCAGTCGACGCCGTTGCTGCTGCTGTTAATCGTGT
GAGCGAGTGGGGCTTTCTTGTAGTTCTCCGCAGTCATTCCTGTTGCTGGT
GGGTCGCTTTGTTGGCAAGGAAGGCCGTGCGGCATACAGTAGCTGCCAGT
ATCGCAGCCACCGTATCCGCCGAAGTGCCCGCCTCCTTTTGTCTATCCAT
TGGGTGGCCTACGCGCGCAGTGCCGTACATAGCCGGGATACCATTTTAAA
GGAGCGCTTTCCTCGTCGTCGTCGACCATACAACTTGTCCCCTCTGTTCT
ACGACACGGGACCCCAACCGCCGCCACCCTTACCTCATGCTTCTCTACCT
CGCCTGGTATTTTCGTCCAACTTGCCGCCTCTCACTCGCTCGTTGTGCTC
GTTTGTTTTTCTCTGTGTCGTTCGTACGTGTTTCTCTCTCGATGATCCGG
TTTATTATCGCCCCGCCGTTCTTGAAGACCTTTTCGAGATGATCATCGCC
AAGTCTGATACCCGCATCGCTGGTAAGTTGTACTAGAATCGATATTTTGC
AAGTGGTACAATTCAGATTTTTTGTCTCTTTTTATTTGTCTTTGGCTTTT
AGGTGCAGCTAGGTGCTGGCATGGGTAGCATTTCTTGTTTTGTTCAGCTT
TTTTGATGCTTGTGTCAAGCTCTTTTCTGCGCAATGTATTGATCCCGTTA
TAGTGCGCGTGTTGGACGCCTCTCGCGTTCCTCCTCAAAGCACGGCTCTT
TCCTTCCCCCTGACCACCCACCTCGTCCTTCCAAGACACGTTTCGGTTGT
TTTGCGGTCTCGGGTGGGCCAAGGGCCCGGGAATGGGATTCCACCTGAGT
TTGTTATTTCATGTTTTGGTTTCTGAGCGATGCGCCCGAATCCATGTCGT
GACGTGAGCCCCTCCTCAAGTGAGGTTGTGCCTTCTGTTAGCCCGTTGGG
GGGAGAGTTCAGGTAGGGCGGATAATTAATTCACCCTGAGGGGTTCTATG
CATGCACACCTCGAGGAGGCTGTAAAGCATGTTTTCGGTGGTGGTGTCAA
TGTGGATCGTGTTGCTGTTGTTATTTTGTATGCATTCCGGACCCACAGAG
CACTATGATAGCGAGCTGGTTGTGGATGGAGAGGCCAAGGAGCTCGGAAC
AGAGCTCAGGAGGTGAGATAAAGAAAGGGGAGACGGCGTCATAGTTTTTT
TTTTCTGCTGCTAGTGCAGTGGGAGTGGGGCGTTTCTTGGGAGGTGGTGG
TGGTGGTGGCCGGGGCAACAGTGGTGATGGAAGAAGTGGTCGTGCGTACG
GTTGTGGCCGTCGTTTCCCTACGCTGCTGTGCCTGGAAGACAGGTGTGAA
TACCTTCGCTGTATTTTCACTTTTAAGAGCGGGCAAAAACACTGAAACAA
TTTCCACCAGATGCCGTTCGGAGAGGGGCCACCCAAGAGCCATCTAGCGG
GCATCGTCCCGTTGAATACGTGGTCCCAGGCACCCTACACTCCACAACAG
ATGTCTTGCTCCTTCCAAGTGCTGCTGTTTTGGGGCAAATATGCACACAA
CCACGAAGAACAGACGATGTTGGGGGATCTTTCCGAATTGCGCCCGGATG
GCTACCTAGGGACTGGCGTTTTCAGGAAATAAACCTGTTTGTGTAGTGCG
TTGGACCGGACGAGGATCATCTGTCGCGCGGCACTCGACGACATCAAGCA
CTTATTTCTGCTGCTCCCCTCCCGCCCCACGGGTTTGTGTTGCCTGTTGG
AACCCGGCGTGCGTGTCAGGCGACTGGGAGAGACGACCGCTGAGATCCTC
AAGGTGTCCGAGAACCCGGAGCTGATCGCCTTCAACAAGCTGCTGCGCTG
GCAGCTGGCTCTCCGAAACCCTTACCTGGACCCTGTCAACGTGATGCAGG
TGAACGAAGAATGCTTGTGGTCGTTGATTTTTTACTAAGTGGGAGATGCC
GTGCCGAATGGGGATTTATCCCCATAGACCAGATAGGGCACGAGGGCGCA
CGGAGCGGTGTTTGTTAGCGTTCTTGCCATGCCCTCAATCCCCCGTCTCG
AAATTACTTCATGTGCTATCGATTCAGTTTAAGGTGGGGGGGTCTATTGT
ACATGGTTTAGGGTCTTGACTATTAGCAGGGTGCATTTATTGCAAATATG
TGGAAGTACTGAAGTCAAGTCGTAGCACACGTTAGTCAAAGCTTGTATGG
TGTTCGCTATACGCTACCACGCTACTTGATGGTATACAATCGCCCCCCTC
CCCCCCCGCCACCCGCCCGGATTAAAACGCTGATCCCGGTTTAGGGCAGG
GCATCAGAAGTCCCGCTCTTGTGCCCTCTTGAATCGGGAGAGGACCGGTT
CCGAGAACGTCATGCTCATTGTTTGGAAATTTTCCAGGCAATAATTCGTC
CCCGCCCACTTTTTTTGCCCCTCGACAACACAGGCGCACATCCTTCACCG
GCTGCGGAACGGCAAGTTCGGCTCTCCCGCAGAGGAGCAATATCTGCAAG
ACGCTCTTATCCTTACGGTCACCGGGATCGCCGGAGGGATGCGCAACACC
GGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13101:121..3976+

>mRNA_Ecto-sp13_S_contig13101.2534.1 ID=mRNA_Ecto-sp13_S_contig13101.2534.1|Name=mRNA_Ecto-sp13_S_contig13101.2534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13101:121..3976+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGAGCCCCCGGCTGTCCCCACGGAACAGTTCCGGGCAACGATGGACAC
TCTTTCGGAGGTATCCTGCGAGGCGTACCGCGACATCGTGAGGAAAGACC
CTCGGTTCGTGCCCTACTTCAGGACGGCCACCCCCGAGCTGGAGCTGGGG
GGCCTCAACATCGGATCACGGCCTGCGAAGAGGAGGCCTACTGGCGGAGT
AGAGAGTCTGCGGGCTATCCCTTGGGTGTTCTCCTGGACTCAGACGAGGT
TGAACCTGCCGGCGTGGCTCGGCGTGGGCGATGCCCTCGCAGCAGTGGCT
TCAACCAAGGAGGGCGTCGAGAACTTGAGCACCATGTACGCGACCTGGCC
CTTCTTCAAGACCAACATCGACCTTTTCGAGATGATCATCGCCAAGTCTG
ATACCCGCATCGCTGAGCACTATGATAGCGAGCTGGTTGTGGATGGAGAG
GCCAAGGAGCTCGGAACAGAGCTCAGGAGGCGACTGGGAGAGACGACCGC
TGAGATCCTCAAGGTGTCCGAGAACCCGGAGCTGATCGCCTTCAACAAGC
TGCTGCGCTGGCAGCTGGCTCTCCGAAACCCTTACCTGGACCCTGTCAAC
GTGATGCAGGCGCACATCCTTCACCGGCTGCGGAACGGCAAGTTCGGCTC
TCCCGCAGAGGAGCAATATCTGCAAGACGCTCTTATCCTTACGGTCACCG
GGATCGCCGGAGGGATGCGCAACACCGGATAA
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