mRNA_Ecto-sp13_S_contig1305.2503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: D8LJ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ79_ECTSI) HSP 1 Score: 555 bits (1430), Expect = 8.960e-197 Identity = 274/294 (93.20%), Postives = 281/294 (95.58%), Query Frame = 1
Query: 109 MRIFTKKAALAGAAAVFFWHHSQCLGYTSFVRPLHPRHCSAVTRAMPYRRSDRNHVLKLAVEGGPPRAVEESTPLSRARDVLFEPAFRSLLPPMAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVYAKLLAAERKEGRNLT 990
MRI +KAALAGAAAV F HHS CLGYTSFVRPLHPRHCSA+ RAMPYRRSDRNHVLKLA GGP RAV ESTPLSRARDVLFEPAFRSLLPPMAAAGALLGPNLDNYHSAFGVLAYKHPIEL VAG LI+TTDWWVPPLFA+AGAGIGALYILLDAALETPQAQREP+WRDVLLSISLFSFQYYLSGLLTAVGCP WVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLY+YNGADFFGVDSWIPIVYFCGGPAVGNLART+YAKLLAAERKEGRNLT
Sbjct: 1 MRISARKAALAGAAAVCFLHHSSCLGYTSFVRPLHPRHCSAIKRAMPYRRSDRNHVLKLAAGGGPSRAVGESTPLSRARDVLFEPAFRSLLPPMAAAGALLGPNLDNYHSAFGVLAYKHPIELNVAGHLILTTDWWVPPLFAVAGAGIGALYILLDAALETPQAQREPLWRDVLLSISLFSFQYYLSGLLTAVGCPNWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYMYNGADFFGVDSWIPIVYFCGGPAVGNLARTIYAKLLAAERKEGRNLT 294
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A7S2WRM2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRM2_9STRA) HSP 1 Score: 203 bits (517), Expect = 3.100e-59 Identity = 106/191 (55.50%), Postives = 130/191 (68.06%), Query Frame = 1
Query: 397 AGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVYAKLLAAER 969
+GALLGPNLD+YH +FGVL Y +P+ L V G +++ T +VPPLF +AG IG LY+ LD AL TP A+R P VL IS FS QYYLSGLL GCP L LA + +FD T AG+ V+ ATA GPLIEI LVN LY Y ADFFGV SWIP VY CGGPAVGNL+R +Y+++L+ ++
Sbjct: 66 SGALLGPNLDHYHGSFGVLEYVYPLTLSVQGTVLLRTSAFVPPLFGLAGLIIGGLYLFLDPALGTPVARRTPQVPKVLYGISFFSMQYYLSGLLAHAGCPLVALHAFLAATMVACWYIFDKTLAGVIVAAATAVGGPLIEIGLVNGLHLYTYTDADFFGVASWIPWVYGCGGPAVGNLSR-LYSRVLSQDK 255
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A7S0DNN3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DNN3_9EUKA) HSP 1 Score: 188 bits (477), Expect = 4.920e-53 Identity = 101/184 (54.89%), Postives = 119/184 (64.67%), Query Frame = 1
Query: 394 AAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTA---VGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLAR 936
A+GALLGPNLDNYH FGVL Y HPI V +++ T +VPP F +AG IG+LY+ LD L T Q+ R P +L I FS QYYLSGLL + PY L+ LA +F VFD T++G V+LAT GPLIE+FLVN DLY Y ADFFG+DSWIP VY G PAVGNLAR
Sbjct: 87 ASGALLGPNLDNYHGLFGVLTYAHPIVFSVKDTVLLQTSSFVPPTFGLAGFLIGSLYLTLDQFLNTTQSSRNPSGLTILSGIGAFSAQYYLSGLLAGGFHIPSPYLHLI--LAATMICIFLVFDRTKSGALVALATGLGGPLIELFLVNQLDLYSYADADFFGIDSWIPWVYAAGAPAVGNLAR 268
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A7S3ZBR4_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZBR4_9EUKA) HSP 1 Score: 168 bits (426), Expect = 2.250e-45 Identity = 95/191 (49.74%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 388 MAAAGALLGPNLDNYHSAFGVLAY-KHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVYAKLL 957
M AGALLGP LDNYH F L Y K EL + G I+ + +WVP LF +AG I LY L D L+T +R+P +L IS F+ QYYLSG L +G V+ +LAV+A F FD + AG SLATA GP IEI L+N Y Y AD +GVDSWIP VYF GGPAVGNL R + +L
Sbjct: 95 MFIAGALLGPFLDNYHGQFDTLRYSKGAFELQMQGMSILKSAYWVPFLFGVAGVLISQLYDLFDKVLDTEMTKRKPTPWKILYGISAFAAQYYLSGYLDKMGIDTPVIHLTLAVLALVGFRYFDGSIAGFVTSLATAVGGPAIEIALINLAQAYSYTNADIWGVDSWIPWVYFLGGPAVGNLGRGIANSVL 285
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A7S4MFY6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFY6_9STRA) HSP 1 Score: 165 bits (418), Expect = 4.960e-43 Identity = 103/220 (46.82%), Postives = 131/220 (59.55%), Query Frame = 1
Query: 322 STPLSRARDVLFEPAFRSLL--PPMAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRL---IVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDL---YVYNGADFFGV-DSWIPIVYFCGGPAVGNLARTVYAKL 954
S LSRA + RS+ MA GA LGP LD+YHS+FGVL Y PI + + G + T WWVPPLF +AG IG LYILLD+ LET + P ++L IS+F+ QY+LSG++ A G V++G ++V+A F VFD+T AGL S ATA GPLIE+ L++ Y Y A G WI VYF GGPAVGNLAR ++ KL
Sbjct: 99 SDTLSRAASAVTSSPGRSISFSALMALCGAALGPFLDSYHSSFGVLQYDAPIYVPLWGTAENPALITSWWVPPLFGLAGFIIGWLYILLDSGLETDGRRMAPSPPEILTGISVFTLQYWLSGVMNASGVGREVILGVMSVVAALGFVVFDSTTAGLLTSAATAVGGPLIEVGLISTLQGHGGYHYTDAGETGFFPLWIVPVYFLGGPAVGNLARGIWNKL 318
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: W7UAA8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAA8_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.980e-40 Identity = 82/190 (43.16%), Postives = 115/190 (60.53%), Query Frame = 1
Query: 388 MAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVG-SLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVYAKL 954
M ++LGP LD++H GVL Y P+ + + ++ T WVP LF +AG + L +++D A +TP + +P DVL ISLFSFQYY+SG+L V V++ SL +A + FD T AGL V + T+ GP++E+ L T+LY+Y+ DF+ V SWIP VY CGGPAV NLAR + L
Sbjct: 106 MGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQAL 295
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: L1JGI9_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JGI9_GUITC) HSP 1 Score: 151 bits (382), Expect = 8.450e-40 Identity = 84/209 (40.19%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 337 RARDVLFEPAFRSLLPPMAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNA------TDLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVY 945
+++D +R L MA GA+LGP LD YHSAFGVL Y +P ++ +AG + TD+WVP +FA+A +G Y +LD + + P L +S F FQYY SGLL G L SLA+ A + +FD TR G +S+ T GPL+E+FL+ LY Y+ D G+ WI VY CG PAVG L+R +
Sbjct: 4 KSKDFQTVSVWRDHLLAMATYGAMLGPQLDGYHSAFGVLKYTNPKQISLAGHFLFETDYWVPAMFALASVILGISYPILDMIFKEEELS-VPTPPKSLACVSFFCFQYYCSGLLFQQGVEDVSLHLSLAISAVACWWIFDRTRTGAIMSIVTGLCGPLVEVFLLQVWPAWTGQTLYAYSAPDMLGIPLWIAWVYGCGAPAVGGLSRLTW 211
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A7S1DHL9_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHL9_HEMAN) HSP 1 Score: 151 bits (381), Expect = 1.660e-39 Identity = 90/227 (39.65%), Postives = 120/227 (52.86%), Query Frame = 1
Query: 301 PPRAVEESTPLSRARDVLFEPAFRSL--------LPPMAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGCPYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFL------VNATDLYVYNGADFFG-VDSWIPIVYFCGGPAVGNLAR 936
PP ++ L R+ +PA + L MA GA LGP LD YHSAFGVL Y +PI + + G + TDWWVPP+F++A + Y +LD+ A+R P +L I+ F FQY+ SGLL + G + SLAV A +FD T GL +++ T GPL+E+ L V + LY Y+ DF G + WI VY CG PAVGNL R
Sbjct: 6 PPPPTRQAAGLHRSLCAQQQPAVEGIPSGPWGTYLAAMAGCGAALGPCLDGYHSAFGVLKYTNPIPIGLGGVKFLETDWWVPPMFSLAAVILAVSYPVLDSLFGVEVAKRSPSGPWILSCIAYFCFQYWSSGLLFSQGASLPTINLSLAVTAVACVALFDRTPTGLVMAIVTGVAGPLVELGLLLGWPEVTGSKLYSYSQPDFAGAIPLWIAWVYACGAPAVGNLGR 232
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A812QHN9_9DINO (INSIG2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QHN9_9DINO) HSP 1 Score: 151 bits (382), Expect = 2.850e-39 Identity = 90/199 (45.23%), Postives = 118/199 (59.30%), Query Frame = 1
Query: 388 MAAAGALLGPNLDNY-HSAFGVLAYKHP--IELYVAGRLIVTTDWWVPPLFAIAGAGIGALYILLDAALETPQAQREPVWRDVLLSISLFSFQYYLSGLLTA----VGCPYWVLVGS-LAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNAT--DLYVYNGADFFGVDSWIPIVYFCGGPAVGNLARTVYAKL 954
+ A+ A+LGP LD H FGVLAY P + + + + +T WVPPLFA AG I +LY L+D AL QR P L ++ F+ Y+ SG +++ G L+ LA+ A + VFD T GL VS+ TA G LIE+FL+NA DLY Y+ ADF+GVDSWIP VYFCG PAVGNL+R + +L
Sbjct: 66 LTASSAVLGPALDGTAHGNFGVLAYHFPPPVPVMLGSYKLFSTAIWVPPLFAFAGLLISSLYWLIDNALAVKAEQRSPSLLQTLAAVMCFAANYWASGFMSSNDLGTGKTVQRLISCVLALWAISAWRVFDGTTTGLVVSVMTAVGGTLIEVFLINAPWWDLYAYSKADFWGVDSWIPWVYFCGAPAVGNLSRLIRNRL 264
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Match: A0A1E7F674_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F674_9STRA) HSP 1 Score: 149 bits (376), Expect = 5.580e-38 Identity = 109/285 (38.25%), Postives = 141/285 (49.47%), Query Frame = 1
Query: 388 MAAAGALLGPNLDNYHSAFGVLAYKHPIELYVAGRLI---VTTDWWVPPLFAIAGAGIGALYILLDAAL-----------ETPQAQREPVWRDVLLSISLFSFQYYLSGLLTAVGC-PYWVLVGSLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYVYNGA---------DFFGVDSWIPIVYFCGGPAVGNLARTVYAKLLAAERKEGRNLT*LDLKPT*IRNRVH*R-CHGTTRLGLMRCESGQAACFPSGNTDKCSSCMASSVFV*RSMF 1167
M+ GA LGP LD+YHSAFGVL Y PI+ + G +TT WWVP LF +AG IG LYILLDA L + QR P + IS F+FQY+LSG+L ++ ++V A F V D + +GL VSLAT GPLIE L+ AT+ + NG FF + WI VYF GGPA GNLAR + L ++ KE T + ++ C GT R+ C+ G T KC+SC + + RS F
Sbjct: 1 MSICGAGLGPFLDSYHSAFGVLKYNEPIQFVLWGSEAYPGLTTAWWVPELFGLAGFLIGWLYILLDAVLLKESSSDEGDVVEQEQQRLPSPPKIFAGISFFTFQYWLSGILVQNSLLDRTGILNLMSVFAAIGFLVLDGSMSGLIVSLATCLGGPLIEAGLITATNNGILNGGYHYTDLGETGFFPL--WIIPVYFLGGPANGNLARGFWNAL--SDNKEEXXXXXXSKAGTSVSDKKSCSACQGTRRVACPNCDGVGTYVATGGRTVKCTSCSSRGYVMCRSCF 281 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1305.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1305.2503.1 >prot_Ecto-sp13_S_contig1305.2503.1 ID=prot_Ecto-sp13_S_contig1305.2503.1|Name=mRNA_Ecto-sp13_S_contig1305.2503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp MRIFTKKAALAGAAAVFFWHHSQCLGYTSFVRPLHPRHCSAVTRAMPYRRback to top mRNA from alignment at Ecto-sp13_S_contig1305:4443..8817+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1305.2503.1 ID=mRNA_Ecto-sp13_S_contig1305.2503.1|Name=mRNA_Ecto-sp13_S_contig1305.2503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1305:4443..8817+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1305:4443..8817+ >mRNA_Ecto-sp13_S_contig1305.2503.1 ID=mRNA_Ecto-sp13_S_contig1305.2503.1|Name=mRNA_Ecto-sp13_S_contig1305.2503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1305:4443..8817+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |