mRNA_Ecto-sp13_S_contig13019.2480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13019.2480.1
Unique NamemRNA_Ecto-sp13_S_contig13019.2480.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13019.2480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13019contigEcto-sp13_S_contig13019:3372..4320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size205
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.841763-CDS-Ecto-sp13_S_contig13019:3371..34191681462697.841763-CDS-Ecto-sp13_S_contig13019:3371..3419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13019 3372..3419 -
1681462697.851609-CDS-Ecto-sp13_S_contig13019:4164..42481681462697.851609-CDS-Ecto-sp13_S_contig13019:4164..4248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13019 4165..4248 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.8624413-UTR-Ecto-sp13_S_contig13019:4248..43201681462697.8624413-UTR-Ecto-sp13_S_contig13019:4248..4320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13019 4249..4320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13019.2480.1prot_Ecto-sp13_S_contig13019.2480.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13019 3372..4248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13019.2480.1

>prot_Ecto-sp13_S_contig13019.2480.1 ID=prot_Ecto-sp13_S_contig13019.2480.1|Name=mRNA_Ecto-sp13_S_contig13019.2480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MSRRGRHPGGRGQSDARHSRNYRPHHGTDLHQHRDQYGDPWPIH
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mRNA from alignment at Ecto-sp13_S_contig13019:3372..4320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13019.2480.1 ID=mRNA_Ecto-sp13_S_contig13019.2480.1|Name=mRNA_Ecto-sp13_S_contig13019.2480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13019:3372..4320- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCAAACTGTGTGCTTGGCGTCTCGTTGTTGCTGGCGGTCCGGCTAGAC
ATAGGTATCGTCTTCCTTTGCCATGAGTCGCCGTGGACGTCATCCTGGTG
GAAGGGGTCAATCGGATGCCCGCCATAGCCGCAACTACAGACCGCACCAC
GGGACGGTATGTGACTCTGAACTCTGATGTATTGCACACATTTGCATTTC
CATGACCCCAACCCACACCCAATCCGCTGCCGCTGCGGCTGAGTTCTAAC
CAACAGAGCCAGCTCGTTTCCATGGTAGCACAACATGCCAAAGAGATGTA
AGACTTTAAAAATACCGACCGAAAGGGGCTGGTCGGACCCACCAACTTAC
ACAGCCATGTGTAGTACGGAGACGCTTGGGTTCCCACGCTAAAATGCTAC
ATTTGCCCAGGATTTACAGAAGTAGACTGGTGCACACTGGCCTCCAGTGG
TAGACGGATGTGCGCATGGAACATGCGCGTGTTTGGATACGGTGCCGCGG
GTCGGATACGCGCTCGTGGCATCCTAACCTCACGGTGATCACTCTTTCCC
CGACCAAATATCTCAGGAAATATCCTACCATCTCAGTCAAACGTCAGGGT
GGCAGCAGATTCGCTCTGAATGTGCACTACTGCTGCAGTGTTTTTTGGGG
TGTTGTGGTAGGATGAAACCAGGTGCTCTGTATATAAGTAGCATGGATGT
GGCCTGAATTTATTGCAAGCTGTTGAATAGCATAACCTGTGATCGCCGCG
GCACATGTTGATTGCAATGTGTCATTACAGATTTCTAGTGCACGGCAGGC
GTCACGCAGCCCTTATTGAAATACTTCGAAGTAGATGCTTGGTCCACCAA
CAGCCGAACGTCAGTCCCTTGTATCCCGATGTTCCGCATCCCCGTACTCA
GGACCTACACCAACACCGCGACCAATACGGCGATCCGTGGCCTATTCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13019:3372..4320-

>mRNA_Ecto-sp13_S_contig13019.2480.1 ID=mRNA_Ecto-sp13_S_contig13019.2480.1|Name=mRNA_Ecto-sp13_S_contig13019.2480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13019:3372..4320- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTCGCCGTGGACGTCATCCTGGTGGAAGGGGTCAATCGGATGCCCG
CCATAGCCGCAACTACAGACCGCACCACGGGACGGACCTACACCAACACC
GCGACCAATACGGCGATCCGTGGCCTATTCAT
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