mRNA_Ecto-sp13_S_contig13.2458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13.2458.1
Unique NamemRNA_Ecto-sp13_S_contig13.2458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13.2458.1 vs. uniprot
Match: A0A7S4MSU8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSU8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.510e-20
Identity = 91/266 (34.21%), Postives = 134/266 (50.38%), Query Frame = 1 
Query:  157 WKCLHDDPGTSKLLKQIYG---GSRPEVSYPKLRTAVPRENIPPEFKDARHHGSGNTGR---GAEKKNENIVRVPKFRGA-RSDGPAPIDSVVTRRKRAGRIHQEQAAVRERVEH-YRPPYVKEVG-ECEKSRLAERFEFGGGKALPEEMTGPVMPIPSEARWKASEERRIAGA-----LRRRKGLPDMDDE--GGGAVGGDKGSAVPSTT-----MFEQVASEIEERQ--QFLLQARESGVPCDRESEARIMAEISLRMRELKRL 885
            W+    D    +LL ++YG   G +P+++YPKL+T   R++   E    +  G G   R   G +++    V VPK   A R    A   + + RRK     H++ A + E V H +RPP   E   + EK RL E F +GGG ALPEE+T P  P+PSE + +  E RR+  A      RR +G  + +D+     ++   + S   S       MF+QV  EIEER+  QF ++   SG      + A+I  EIS RM+EL +L
Sbjct:   21 WRVFQHDTEAGRLLSRLYGVQPGGKPQINYPKLKT---RKSCSTERAHWKSPGQGEVDRKRAGFDRRRAASVSVPKVGSAVRRGETASAVTFIPRRKNEVACHEDLACI-ESVRHTFRPPNRSEYSTDREKDRLNELFTYGGGVALPEELTLPEAPLPSEEKHRRVEARRVEKAKCRRQARRNRGSKEDEDDLSDDSSLSNSRESEAMSDKGHNDRMFDQVLGEIEERRMFQFSMEEASSGAL----TRAQIADEISSRMKELVKL 278
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BLAST of mRNA_Ecto-sp13_S_contig13.2458.1 vs. uniprot
Match: A0A7S2W819_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W819_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.740e-19
Identity = 89/253 (35.18%), Postives = 126/253 (49.80%), Query Frame = 1 
Query:  157 WKCLHDDPGTSKLLKQIYGGSRPEVSYPKLRTA----VPRENIPPEFKDARHHGSGNTGRGAEKKNENIVRVPKFRGARSDGPAPIDSVVTRRKRAGRIHQEQAAVRERVEHYRPPYVKEVGECEKSRLAERFEFGGGKALPEEMTG-PVMPIPSEARWKASEERRIAGALRRRKGLPDMDDEGGGAVGGDKGSAVPSTTMF--EQVASEIEERQQFLLQARESGVPCDRESEARIMA-EISLRMRELKRLTP 891
            WK         +LL+QIYG   P V+ P  R +     P E   P            + R  +K  E  V++P  R AR+D       +V+RRKR   I  E    + R+EHYRPP+++ +G+ EK RLAE   F GGK LP EMT  P+   PSE   +  E  RI  A RRR GLP+            + SA  S T    E +  EI+ER++ L   +  G+   R  +A+ +A EI++R+REL+++ P
Sbjct:   23 WKAFDTSSEAGRLLRQIYGSKPPPVNVPLPRRSRNPGPPTEGWRPVSNRVGQVDPRRSTRSIDK--EKAVQIP--RRARADRSYSKIDLVSRRKRGDVIRDELQDAKMRMEHYRPPHLRPMGQ-EKDRLAEICAFKGGKILPAEMTAIPLEVTPSEQVARIKERERIEKARRRRAGLPEPTLT--------RPSAPKSHTQMLEETILDEIDERRKHLEDMQGLGM---RAEDAKTLAGEIAVRVRELRKVNP 259
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BLAST of mRNA_Ecto-sp13_S_contig13.2458.1 vs. uniprot
Match: A0A7S4A5Q9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5Q9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-16
Identity = 84/258 (32.56%), Postives = 123/258 (47.67%), Query Frame = 1 
Query:  139 LSATQMWKCLHDDPGTSKLLKQIYGGS--RPEVSYPKLRTAVPRENIPPEFKDARHHGSGNTGRGAEKKNENIVRVPKFRGARSDGPA--PIDSVVTRRKRAGRIHQEQAAVRERVEHYRPPYVKEVG-ECEKSRLAERFEFGGGKALPEEMTGPVMPIPSEARWKASEERRIAGALRRRKGLPDMDDEGGGAVGGDKGSAVPS-----TTMFEQVASEIEERQQFLLQARESGVPCDRESEARIMAEISLRMRELKR 882
            ++  + W+         ++LK++YG S   P ++YPKL T  PR+ +P +F            R    + E    V  +R  +   P   PID V  +R  A  I +    +  R   YRPP V     + EK+RL E  +FGGGKALP+EMT     +PSE R +A EE R+    R+R+GL +           +  +A P      T   EQ++ EIE+R  FL +A+  G+    E   R+  EIS R  EL+R
Sbjct:    1 MAQNKAWQAFDTSTEAGRMLKKLYGSSAGHPNIAYPKL-TTKPRKQMP-KFIPGGAKLDATDARSNSHRREKASTVEPWR-KKYARPTYKPIDFVARKRNTAA-IDEILEDMSMRNAAYRPPRVNGSSTDAEKARLQEIAQFGGGKALPDEMTLGKTTLPSERRAQALEEARVEREWRKRRGLTE-----------EPAAAAPEPKSLETQQIEQISREIEDRAAFLEEAKAMGLKG--EPIKRVEFEISTRKHELER 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13.2458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4MSU8_9STRA7.510e-2034.21Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2W819_9STRA1.740e-1935.18Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4A5Q9_9STRA2.220e-1632.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13contigEcto-sp13_S_contig13:48936..53019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1465
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004300.1
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13.2458.1prot_Ecto-sp13_S_contig13.2458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13 49089..52454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462695.9425523-UTR-Ecto-sp13_S_contig13:48935..490881681462695.9425523-UTR-Ecto-sp13_S_contig13:48935..49088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13 48936..49088 +
1681462696.0053427-UTR-Ecto-sp13_S_contig13:52454..530191681462696.0053427-UTR-Ecto-sp13_S_contig13:52454..53019Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13 52455..53019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462695.9556804-CDS-Ecto-sp13_S_contig13:49088..491781681462695.9556804-CDS-Ecto-sp13_S_contig13:49088..49178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13 49089..49178 +
1681462695.964818-CDS-Ecto-sp13_S_contig13:50169..502971681462695.964818-CDS-Ecto-sp13_S_contig13:50169..50297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13 50170..50297 +
1681462695.974898-CDS-Ecto-sp13_S_contig13:50804..509601681462695.974898-CDS-Ecto-sp13_S_contig13:50804..50960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13 50805..50960 +
1681462695.9847326-CDS-Ecto-sp13_S_contig13:51430..516561681462695.9847326-CDS-Ecto-sp13_S_contig13:51430..51656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13 51431..51656 +
1681462695.995581-CDS-Ecto-sp13_S_contig13:52307..524541681462695.995581-CDS-Ecto-sp13_S_contig13:52307..52454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13 52308..52454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13.2458.1

>prot_Ecto-sp13_S_contig13.2458.1 ID=prot_Ecto-sp13_S_contig13.2458.1|Name=mRNA_Ecto-sp13_S_contig13.2458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
MWKCLHDDPGTSKLLKQIYGGSRPEVSYPKLRTAVPRENIPPEFKDARHH
GSGNTGRGAEKKNENIVRVPKFRGARSDGPAPIDSVVTRRKRAGRIHQEQ
AAVRERVEHYRPPYVKEVGECEKSRLAERFEFGGGKALPEEMTGPVMPIP
SEARWKASEERRIAGALRRRKGLPDMDDEGGGAVGGDKGSAVPSTTMFEQ
VASEIEERQQFLLQARESGVPCDRESEARIMAEISLRMRELKRLTPSA*
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mRNA from alignment at Ecto-sp13_S_contig13:48936..53019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13.2458.1 ID=mRNA_Ecto-sp13_S_contig13.2458.1|Name=mRNA_Ecto-sp13_S_contig13.2458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4084bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13:48936..53019+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCAGTCAGCACACACGCGTGTTCCGGAAACGATGTGCTTCTCCTGA
GTCTACCTGCTGTAAACAACGATCGTGTCCCCAATAAAGAGGGCGGCACT
CGTTCGTTTGTTGTTGGCATTACTTACTCGCTGTGATCCTGAGCGCTACC
CAAATGTGGAAATGTCTCCACGACGATCCTGGAACGTCAAAGCTGCTAAA
ACAGATTTACGGAGGGAGTCGACCAGAAGTATCTTACCCGAAGGTATAGT
CTATTAGAACAGTGTACGCGCAACGCTTTTTTTTCACCGCCCGGGCTTCG
ATTGACAACGCGGTGTTAGACTACAAGGTACACACAGCAGACTTGTTCAT
GCCCACCTGTCTCTGCATGGATGATACCCTTGCGACTCACTACCATAGCG
CGCGTTCTGTAGTCAAAGTCACAGGAACCCTATTGCATAACCAAGCGCAC
TAGTCAGTGTCCAGCGTGCCGCTTGCTGGACACGACGTTAGTTTCCCGCC
GTATGTTTTTGTTAGCCTGCAAGTGCGCGACTGTGTGACAAGGATGCACG
TTGCGCCGTCCGTGGGAACTTGAACGTGCTCCTTAGATAACGTCAAGGTT
GTTCAGTGTCACCTACGTAAAAGAAATGTGGTAGTACATTTTAATGGATA
AAGACTAGCTAAATCAAAACCATGAATAACCAAATAAATCAACAGTAGTT
TTCTCATATACGTGCATAAACCATAGGCTTTCTTTCATGATCGGATAAAA
GCATCTTCTATTTTGCTACCTATGGTTTGGGAATGTTGGTAGACTATAGG
ATATAGTTCAGGGTGGCTTTAAATATGAAGACAACAACCACGGTGCGGCC
TTGTTCATTCGTAGAAGCCTGAATCGGCAGGCCATCAACGTTGATGAAAC
CGATACCTAATAGGCGTACCAAAAGAGCATTACAAAGTGCCGGAGTACCT
CGCAGATGGCTTCTCGTTTCTGTGTGATGCTGCCTACGCTGATGCGACTC
TCTGTACATGGTTTCAGCTTGGACAAATGCCTGCTTGGTCGGTCAAAGCC
CGATGTGTTGTGCCCCAGAGTTTGAAGGTCCAACTCGACGATCATTAAGA
CGTTAGCCGTACACGGTCATGAGTGCCGCTCCCTGCTCCCCCGGCCTTGC
CCACCTACCTGTCATCAAATGACCTCGTTGGGCGTGCATGGATGCGTTCG
TATCTATCTCGTGTTTACCTGCACCTCAACTAAGTTGAGGACGGCCGTGC
CAAGGGAAAATATTCCTCCCGAGTTCAAGGATGCGCGCCACCATGGTAGT
GGCAACACCGGCAGAGGCGCGGAAAAAAAAAACGAGAATATTGTTCGAGT
TCCCAAATTCAGGTAAGGGATTGTGCGGATGTGTACCGACTTTGATAAAA
GTCAATCGACAGATACCCTCGGAATCGGGTGTTCCTCAAAAGACGATTTT
TTGGGTAGGTGATTTGTTTTTTTTTGCTTTTGTCTTCTCTCACAAATGAA
GTGTCACCGAATACACTGACTGGTGGTTCATGGAGTTCAACAGGTTCCCG
AAGAGCATGGGTGGCGAGAAAAGTCAAGCAGTTAGTGATACTTGCTGAAG
TGACAGGAGGTTCCGGATAACCTACAGTACGACGAGTTGGATGTTCCGGG
CCGTGGGTTGTGAGGGCACGCGGGGTTATTGCAGCGAAAAAGTGCTGATG
ATCTCGTTCAAGGGGTAACCGCCTCCCTCATTCCTGCCAAGGGGAACGGT
TGGCGCACAACCAGGTATATGCGGTGTACTCTGCCCTCGATCCCACATGC
GCCGCCGCTCAAGCCGCCGCATATTCTCTGGCCGTCGTTTCTATCTCCGT
CTTGTTACTTCTCGCGAAGAGGGGCACGGTCCGACGGCCCTGCGCCGATC
GACTCCGTCGTGACGCGGCGCAAGCGGGCGGGTCGGATCCATCAAGAGCA
AGCGGCAGTTCGGGAGCGCGTGGAGCACTACCGCCCGCCCTATGTGAAGG
AAGTCGGCGAATGCGAGAAATCTAGGTACTTGCTTAGATTCCTCTAAGAG
TGAATGATGCGTTTCGTACGCAATTTCCTATAAAGTAGAGCAGCAGTTAT
CTATTAAAACTAGCCGGTAGATACCAGCGTGCTGAATACGACCCCGTAGC
GGGGTGTTGGTACTGCAGTAGGTAGAAGACGGTCTTCGCCGTGGGTTAAG
GGATGTGCGGGCCCGTGTCGTCCTGCCGGCGTCGATGTGCCGCACGTGTT
ATTGACAAATCGAACATCCCGAACGTTGTAGGAGTCCCGCAGAATTATCA
AGTTTCATCCACGTACTTGCCTTCTTTTCGTGTTGAATACTAGACTGGAC
CTGTGGACGCAGGAATGTTGAACCCCTTGAGTGAGAAAAACTAAAAGCAC
GGGGGTCAACAACAACCCATTTGGGTAGACCAAGAAATAACCTTGTTCGA
AGGTGCTTATTGCGAACAGTATAACCTGCCATTCTTGTGTGCAAGGTTGG
CGGAGAGGTTTGAGTTCGGGGGTGGGAAAGCTCTCCCCGAGGAGATGACT
GGACCTGTCATGCCGATTCCATCCGAGGCGAGGTGGAAAGCTTCGGAGGA
GAGGCGCATCGCCGGGGCCCTGCGGCGAAGGAAGGGTCTGCCAGATATGG
ACGATGAGGGTGGTGGGGCTGTTGGTGGCGACAAAGGGTCTGCCGTGCCA
TCGACTACTATGTTCGAGCAGGTGGGGTTAGGCAAGCAGCTCGCGTCCCT
GGGTAAAGGCTAGTGTGGGGGGTCAACAAGGTTGCGTGATGTTCCATGGA
TATTCCGAGTATCTTCGGGAGGGTTCAGAAACCTATCGTTCAAGGCTTGT
CATGCACCAACAAATTACCCCGTACACAGCAAATTGAACAAAGAGAAAGC
TGTCGCACCCAACCCCCGCCCGGAACTCGTCAATATTTGGGACGTTCTTG
TAGCCGTCAGAAGGACGTGGTGGTAATTGAGAACAACGCTAGACTTGAAG
CAAGGAAACGACTTGCTTGAATGAGACGAGGGTGGGGTAGAGAGTATGGC
CGTACACAAGAGAGTCCGCCGGCTGACGTGACAACGTCAGCCTTGGGCGG
AAGCTACTCGTGTTGAGGTTGGGTTGTGACATTCTCGTTAGTAGCGAGTG
CCCGTCAACGGAGATCAGGCAGGAAAATATCGGTAGAGACAGTGTTCCCG
CCCTCCCGTTTCCAAGTCACAAGCAAGACGATCCAGCCTGATCATTGTCG
ACGATTCCCCGTTTTTTTTTCACTGCACGCTAAGTCTCAAGCGTCAGTCC
GGCCGCGTCACTGCTTTAGGCCTTGGCCTTTACGCTCGTTCGAAACAAAC
CCAAACAACCGAACAACGCAAGGTCGCGAGCGAAATCGAGGAGAGGCAGC
AGTTCCTACTCCAGGCGAGAGAGTCGGGGGTCCCGTGCGACAGGGAGAGC
GAGGCACGGATCATGGCAGAGATATCGCTAAGGATGCGCGAGCTGAAGCG
GTTGACTCCGTCCGCTTGAAATGGTCGGTCGTGGCAATGTTGTTCGCGAT
TCAGTTCGTGTCGTCAGATCCTTGGTGACGAGACTCGAAAACAGGGAAAC
GGTCGATAGCAGTGAGTGGTGGCAGGGGCGGGGGCAGGGGCGGTGACGGT
GATTTTAACGCGAGTTTAGCCCGTCTACACCACGCATCCATACCCAGAGA
TTACAGAAGATGGTATTGAGCAGGTGGTTGGGTTGGTGGGTCGGGGATGA
TTATTATGTGGTACGCACAACCGTCCAACGAAACGAGCACCTGTTCAAGT
TGCTGCACAATATGTTATTTTCGGAAATGAACCTTGACCCGAAATCTTTT
CGAAATGGCCGGGGGCTCATCATGGGAAGCGCGTACTGCTGTGCCGCTTA
TTACCGATTCCAAGAGAGTTCCTTGTCCGTGAACGGCATCCGTGTGGGGG
TTGGCTGTGTATTTTTTATTTATGAAATTTGATGGGAGCAGGCGGCCCCT
AGAAGTCTCTTTGGCCCGTTATATGTCCGTTTTAGTAGTGCATGGTTTTG
AATGTGAAGACAACAATGACAACAACAACAACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13:48936..53019+

>mRNA_Ecto-sp13_S_contig13.2458.1 ID=mRNA_Ecto-sp13_S_contig13.2458.1|Name=mRNA_Ecto-sp13_S_contig13.2458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13:48936..53019+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAAATGTCTCCACGACGATCCTGGAACGTCAAAGCTGCTAAAACA
GATTTACGGAGGGAGTCGACCAGAAGTATCTTACCCGAAGTTGAGGACGG
CCGTGCCAAGGGAAAATATTCCTCCCGAGTTCAAGGATGCGCGCCACCAT
GGTAGTGGCAACACCGGCAGAGGCGCGGAAAAAAAAAACGAGAATATTGT
TCGAGTTCCCAAATTCAGAGGGGCACGGTCCGACGGCCCTGCGCCGATCG
ACTCCGTCGTGACGCGGCGCAAGCGGGCGGGTCGGATCCATCAAGAGCAA
GCGGCAGTTCGGGAGCGCGTGGAGCACTACCGCCCGCCCTATGTGAAGGA
AGTCGGCGAATGCGAGAAATCTAGGTTGGCGGAGAGGTTTGAGTTCGGGG
GTGGGAAAGCTCTCCCCGAGGAGATGACTGGACCTGTCATGCCGATTCCA
TCCGAGGCGAGGTGGAAAGCTTCGGAGGAGAGGCGCATCGCCGGGGCCCT
GCGGCGAAGGAAGGGTCTGCCAGATATGGACGATGAGGGTGGTGGGGCTG
TTGGTGGCGACAAAGGGTCTGCCGTGCCATCGACTACTATGTTCGAGCAG
GTCGCGAGCGAAATCGAGGAGAGGCAGCAGTTCCTACTCCAGGCGAGAGA
GTCGGGGGTCCCGTGCGACAGGGAGAGCGAGGCACGGATCATGGCAGAGA
TATCGCTAAGGATGCGCGAGCTGAAGCGGTTGACTCCGTCCGCTTGA
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