mRNA_Ecto-sp13_S_contig12963.2434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12963.2434.1
Unique NamemRNA_Ecto-sp13_S_contig12963.2434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12963.2434.1 vs. uniprot
Match: A0A6H5JW48_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW48_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.010e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:    1 VSTESKARLATDDEINDARWYRLRKLGKK 87
            VSTESKARLATDDEINDARWYRLRKLGKK
Sbjct:   17 VSTESKARLATDDEINDARWYRLRKLGKK 45
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BLAST of mRNA_Ecto-sp13_S_contig12963.2434.1 vs. uniprot
Match: D8LLL2_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:    1 VSTESKARLATDDEINDARWYRLRKLGKK 87
            VSTESKARLATDDEINDARWYRLRKLGKK
Sbjct:  279 VSTESKARLATDDEINDARWYRLRKLGKK 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12963.2434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW48_9PHAE1.010e-9100.00PPIase cyclophilin-type domain-containing protein ... [more]
D8LLL2_ECTSI1.020e-9100.00RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12963contigEcto-sp13_S_contig12963:133..273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D8LLL2
Preferred namePPIL2
Model size141
KEGG koko:K06532,ko:K10598
KEGG Pathwayko04120,ko05202,map04120,map05202
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0002376,GO:0003006,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007530,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016477,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0018992,GO:0019538,GO:0019787,GO:0022414,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0034450,GO:0034613,GO:0034641,GO:0036211,GO:0040011,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0048870,GO:0050900,GO:0051179,GO:0051641,GO:0051674,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0070727,GO:0071704,GO:0071944,GO:0072657,GO:0072659,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990778
Exons1
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0883@2759
EC5.2.1.8
Cds size141
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110,ko04090,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.7762475-CDS-Ecto-sp13_S_contig12963:132..2731681462693.7762475-CDS-Ecto-sp13_S_contig12963:132..273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12963 133..273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12963.2434.1prot_Ecto-sp13_S_contig12963.2434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12963 133..273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12963.2434.1

>prot_Ecto-sp13_S_contig12963.2434.1 ID=prot_Ecto-sp13_S_contig12963.2434.1|Name=mRNA_Ecto-sp13_S_contig12963.2434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
VSTESKARLATDDEINDARWYRLRKLGKKARRKITATTWTAAAFQR*
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mRNA from alignment at Ecto-sp13_S_contig12963:133..273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12963.2434.1 ID=mRNA_Ecto-sp13_S_contig12963.2434.1|Name=mRNA_Ecto-sp13_S_contig12963.2434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12963:133..273+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGCACGGAGAGCAAAGCCCGCCTTGCCACGGACGACGAAATCAACGA
CGCGCGCTGGTACCGTCTCCGAAAACTTGGCAAGAAGGCAAGACGGAAAA
TAACAGCAACCACTTGGACTGCGGCAGCGTTTCAGCGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12963:133..273+

>mRNA_Ecto-sp13_S_contig12963.2434.1 ID=mRNA_Ecto-sp13_S_contig12963.2434.1|Name=mRNA_Ecto-sp13_S_contig12963.2434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12963:133..273+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGCACGGAGAGCAAAGCCCGCCTTGCCACGGACGACGAAATCAACGA
CGCGCGCTGGTACCGTCTCCGAAAACTTGGCAAGAAGGCAAGACGGAAAA
TAACAGCAACCACTTGGACTGCGGCAGCGTTTCAGCGTTAG
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