mRNA_Ecto-sp13_S_contig12961.2430.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI) HSP 1 Score: 576 bits (1485), Expect = 3.160e-196 Identity = 305/330 (92.42%), Postives = 310/330 (93.94%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDMLSSPGARTSNPLSSPAEKRRKNADSSIGWPPNLFPAEKPSRPPLKAAERNRLHENDATSGTTMDDCPCVPRREGEALRSSAGEQPCGDAGPLPEATRTAEAAVPAAMPAGSVVAGAGTGASSTPSAVELDLVDVEAQKAIMADIERRKRGQQETKTNGAHTSQSGGNSRERRRKSTPGSGRKRTNSSTRSDDGRPADASLRGFFGGNVVSDAKGTRALAESVGGCRGQEVLTIDDEDCGTETPEPMDIRDFFSRRK 991
YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDMLSS GAR SNP SSPAEKRRKNA+SS GWPPNLFPAEKPSRPPLKAAERNRLHENDATSGTT+DD PCVPRREGEALRS AGEQPCGDAG LPEAT TAEAAVPAAMPA S VA AG A+STPSAVELDLVDVEAQKAIMADIERRKRGQQETK GAHT+QSGGNSRE RRKSTPGSGRKRTNSSTRSDDGRPADA+LRGFFGG VVSDAKGTR LAESVGGCRG EVLTIDDEDCGTE PEPMDIRDFFSRRK
Sbjct: 382 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDMLSSSGARASNPFSSPAEKRRKNANSSTGWPPNLFPAEKPSRPPLKAAERNRLHENDATSGTTLDDYPCVPRREGEALRSRAGEQPCGDAGRLPEATMTAEAAVPAAMPARSFVADAGARAASTPSAVELDLVDVEAQKAIMADIERRKRGQQETKATGAHTAQSGGNSRESRRKSTPGSGRKRTNSSTRSDDGRPADANLRGFFGGKVVSDAKGTRTLAESVGGCRGHEVLTIDDEDCGTELPEPMDIRDFFSRRK 711
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A7S0PPJ7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PPJ7_MICPS) HSP 1 Score: 75.9 bits (185), Expect = 2.630e-12 Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFC-KRDPPSATASRGIDMLSSPGA 241
YSEHSSF +L +FV+ +RP+++ PTVNA + A ++++ HFLEF DL++D+ RL+ YF KR P A ++ S P A
Sbjct: 60 YSEHSSFVELVEFVKRIRPRRVTPTVNADTKADKDRIMKHFLEFTDLAADKNRLDHYFFNKRSAPEVKAEVKREIESDPVA 140
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: K8YRT5_NANGC (Hydrolase involved in interstrand cross-link repair n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRT5_NANGC) HSP 1 Score: 74.3 bits (181), Expect = 2.270e-11 Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESY 172
YSEHSS+T+L+ FVR +RP+KI+PTV A VE+ L HFL MDLS DR RL+ Y
Sbjct: 74 YSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRY 130
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: W7THR8_9STRA (Dna cross-link repair 1a protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THR8_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.600e-10 Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESY 172
YSEHSS+T+L+ FVR +RP+KI+PTV A VE+ L HFL MDLS DR RL+ Y
Sbjct: 243 YSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRY 299
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A4D9CSH8_9STRA (DRMBL domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH8_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.610e-10 Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESY 172
YSEHSS+T+L+ FVR +RP+KI+PTV A VE+ L HFL MDLS D+ RL+ Y
Sbjct: 402 YSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDKSRLDRY 458
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 1.580e-9 Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCK-RDPPSATAS 208
YSEHSSF +L+D V+T+RP++IVPTVNA + A+ ++ F + MDLS DR RL+ + K + P ATAS
Sbjct: 298 YSEHSSFAELRDCVKTLRPRRIVPTVNASTPAAARSLVDRFADLMDLSKDRSRLDFFLRKAKTAPPATAS 367
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A5J4Y9L3_9CHLO (DNA cross-link repair SNM1-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9L3_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 4.360e-9 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDML 226
YSEHSSF +L+D V+ +RPK+I+PTVN +AS ++ F + MDLS D+ RL+SYF + TAS D L
Sbjct: 352 YSEHSSFAELRDCVKRLRPKRIIPTVNCPDAASARAIVDRFADLMDLSRDKSRLDSYFGR------TASAPADAL 420
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A7R9T7F0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T7F0_9CHLO) HSP 1 Score: 67.8 bits (164), Expect = 3.360e-8 Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLS-HFLEFMDLSSDRKRLESYF 175
YSEHSS+T+L++F++ ++PKKI PTVNA++ EK+++ HFL+ +DL D RL+ YF
Sbjct: 345 YSEHSSYTELREFIKFLKPKKITPTVNAITPKDREKLVNKHFLDLVDLKQDVNRLDYYF 403
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A2P6TNP6_CHLSO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNP6_CHLSO) HSP 1 Score: 66.6 bits (161), Expect = 9.760e-8 Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCK 181
YSEHSSF +L+D VR +RP++I+PTVNA AS + F + MDLS+DR RL Y +
Sbjct: 724 YSEHSSFPELRDCVRALRPRRIIPTVNAGDPASSRAQVDRFADLMDLSADRSRLSYYLLR 783
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Match: A0A383V4K8_TETOB (Lactamase_B domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4K8_TETOB) HSP 1 Score: 65.9 bits (159), Expect = 1.300e-7 Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 2
Query: 2 YSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDM 223
YSEHSS+ +L+ V +RP K++PTVNA S A ++ F++ MDLSS+R RL+ + +R P+A++S+G +
Sbjct: 297 YSEHSSWDELRQCVAALRPSKLIPTVNAGSKAKSAALVERFVDLMDLSSNRGRLDMFLVRR--PAASSSQGAQL 368 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12961.2430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12961.2430.1 >prot_Ecto-sp13_S_contig12961.2430.1 ID=prot_Ecto-sp13_S_contig12961.2430.1|Name=mRNA_Ecto-sp13_S_contig12961.2430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp MLSHFLEFMDLSSDRKRLESYFCKRDPPSATASRGIDMLSSPGARTSNPLback to top mRNA from alignment at Ecto-sp13_S_contig12961:2..2068+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12961.2430.1 ID=mRNA_Ecto-sp13_S_contig12961.2430.1|Name=mRNA_Ecto-sp13_S_contig12961.2430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2067bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12961:2..2068+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12961:2..2068+ >mRNA_Ecto-sp13_S_contig12961.2430.1 ID=mRNA_Ecto-sp13_S_contig12961.2430.1|Name=mRNA_Ecto-sp13_S_contig12961.2430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12961:2..2068+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |