mRNA_Ecto-sp13_S_contig12954.2426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12954.2426.1
Unique NamemRNA_Ecto-sp13_S_contig12954.2426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: D7FIR2_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR2_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 5.410e-155
Identity = 254/267 (95.13%), Postives = 262/267 (98.13%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMAHMEKCRQQRDVLDRAARARKSLEAKRF 801
            QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKK+QEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEV+ETRKEQIAEKAER TDAQ LAAAYHQEVIRKVA+G+AAEKATADARAAKARTTARDQQQQLREFQTSYIASLVK KEDGDETQRAAKAAIEAEE+EKRALKLKNRAEMEKML AN+DLHQRRAERISEE+A+MEKCRQQRDVLDRAARARKSLE KRF
Sbjct:   12 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKQQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVIETRKEQIAEKAERHTDAQALAAAYHQEVIRKVAEGDAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKAKEDGDETQRAAKAAIEAEEDEKRALKLKNRAEMEKMLTANKDLHQRRAERISEELAYMEKCRQQRDVLDRAARARKSLETKRF 278          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A6H5KEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN4_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 3.050e-133
Identity = 230/267 (86.14%), Postives = 240/267 (89.89%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMAHMEKCRQQRDVLDRAARARKSLEAKRF 801
            +AELDRIR+KVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKK+QEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEV+ETRKEQIAEKAER TDAQ LAAAYHQEVIRKV +G+AAEKATADARAAKARTTARDQQ+QL EFQ                      AAIEAEEEEKRALKLKNRAEMEKMLA NQDLHQRRAERISEE+A+MEKCR+QRDVLDRAARARKSLEAKRF
Sbjct:   60 RAELDRIRSKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKQQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVIETRKEQIAEKAERHTDAQALAAAYHQEVIRKVTEGDAAEKATADARAAKARTTARDQQRQLHEFQ----------------------AAIEAEEEEKRALKLKNRAEMEKMLAVNQDLHQRRAERISEELAYMEKCRKQRDVLDRAARARKSLEAKRF 304          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A7S3XWQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWQ0_HETAK)

HSP 1 Score: 157 bits (397), Expect = 1.950e-41
Identity = 108/267 (40.45%), Postives = 159/267 (59.55%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMAHMEKCRQQRDVLDRAARARKSLEAKRF 801
            +++L R++ KV  TP +D +ARRRHLK LSD RVS WPNTLEA R+ KENWK ++E+ +E +R+++D+ EA LQ++MR  TI+ AN  LYEQT +MKLL+S  L AEVV+ R+ Q  EK +R+     L   +H E++R++   E  E      + AKAR    DQQ+QL E++  YI  L++ K +G+  +  A+A                R   E+ML +N DL  RR  +++ E    +        ++R   ARK+LE +RF
Sbjct:    8 RSDLQRLKEKVKATPMSDHEARRRHLKALSDNRVSRWPNTLEANRKQKENWKIEKEERIEKERQEIDRREAELQKEMRLLTIQNANKVLYEQTDRMKLLKSRKLLAEVVQEREVQKLEKLQRRKGDVDLELQHHDEMVRQLRLAEDREAQALAKKKAKARAVQADQQEQLEEYKAKYIEGLLEEKAEGERVRARAEADFLEXXXXXXXXXXXARRVAEEMLRSNADLQARREAQLAAEKREQDDREAHLVEVERMKGARKALEVRRF 274          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A835YVV5_9STRA (TPH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 7.410e-41
Identity = 111/267 (41.57%), Postives = 148/267 (55.43%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMAHMEKCRQQRDVLDRAARARKSLEAKRF 801
            +AE+  IRAKV   PETD +ARRR LK LSDERV HWPNTLEA R  K+NWK ++E  +E +R  +D+ EA LQRQMR ETI +AN  LYEQT K+K LRS LLY +++ETR  Q+ E   R+  +    AAY ++ +R     E                    Q +QL E +  Y+ASLV  + +G      A                  RAEMEKM+A N  L ++R     +E   +++C ++R  L+  A ARK+LE  RF
Sbjct:    4 RAEVATIRAKVAPPPETDLEARRRELKKLSDERVKHWPNTLEATRMKKQNWKLEKEQRLEEERLQIDRREAELQRQMRLETIAKANAALYEQTDKIKSLRSALLYGDILETRAAQVQEAQARRARSSVRDAAYLEQALRGARAVEERXXXXXXXXXXXXXXXXAVQMEQLSECRDKYVASLVAERAEGARVAAEAAXXXXXXXXXXXXXXXXARAEMEKMMAVNTSLREQREAHAQKEQEELQRCEEERGALNALAAARKALEGLRF 270          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A5D6Y2N9_9STRA (TPH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2N9_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.640e-33
Identity = 95/236 (40.25%), Postives = 141/236 (59.75%), Query Frame = 1
Query:    7 ELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEE 714
            EL+RI A V+   ++D +A+R  +K  S++R + WPNTLEA R+ K+ WKK +E+  E  R+ +D+EEA LQR+ R + I+RAN  LYEQT +MK LRS  L A+VV  R  Q+ EK       + +   Y ++V+ KV QGE  EKA    +  +    AR Q+QQL E++  YI+ L + K DG+ T+  A+  +  E+E +RA KL+ R   E+   AN  L   R  ++ +E
Sbjct:   10 ELERILASVSAPTQSDREAKRLAIKAKSEQRTAQWPNTLEAMRKKKDRWKKDKEEREEEARKKIDEEEAQLQREARTKQIERANHLLYEQTDRMKTLRSKQLLADVVHHRTLQVEEKTMLDEQDRLVDFVYDRQVLAKVLQGEEEEKAERKRKQLEHEKLARVQKQQLEEYKERYISELREEKRDGERTKEKAEQDLRDEQERERARKLRLRQAGEETQLANMRLKAHREVQLEQE 245          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: W4GU32_9STRA (TPH domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GU32_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.420e-27
Identity = 92/242 (38.02%), Postives = 144/242 (59.50%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEM--EKMLAANQDLHQRRAERISEEMA 720
            ++ELDRIR  ++   +++ +A+R+HLK LS +R   WPNTLEA R+ KENWKK +E+  EA+R  +D+EE  LQ++ R + I+RAN  LYEQT +MK LRS  L A+V++ R+ QI EK E +   Q +   +   ++ ++   +         R  K +     QQ+QL E++ S+IA+L +   DG+  +  AKA  +A +EE+  L  K R +   E M  AN+ L+  R +   +E+A
Sbjct:    7 ESELDRIRQSISDPVQSNHEAKRQHLKELSTQRTGKWPNTLEAMRRKKENWKKDKEEREEAERLKIDEEELRLQKEYRTKQIERANRLLYEQTDRMKTLRSKELLADVLQDREYQIGEKNEFKAMDQKVEDGWTGVLMTQLRDADKKADDERKVRERKHKELVVMQQKQLEEYKNSHIATLREEMRDGERIK--AKAEQDARDEEESELARKRRVKQANEDMRLANERLNLLRKQEAEKEVA 246          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A833S2A7_PHYIN (Trichohyalin-plectin-homology domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S2A7_PHYIN)

HSP 1 Score: 116 bits (291), Expect = 2.630e-26
Identity = 86/225 (38.22%), Postives = 132/225 (58.67%), Query Frame = 1
Query:    7 ELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDL 681
            EL+R+RA V+   ++D +ARR+ +K+ S++R + WPNTLEA R  K+ WKK +E+ +E  R+ +D+EE  LQR+ + + I+RAN  LYEQT +MK LRS  L A+VV  R  Q  +K   +         Y Q+V+ +V +GEA E+     R  +    A  Q+QQL E++  YI  L + K +G+  ++ A+     E+E+ R  KL+ +   E    ANQ L
Sbjct:   11 ELERMRASVSPPVQSDREARRQAIKLKSEQRTAKWPNTLEALRMKKDRWKKDKEERLEXXRQKIDEEEMRLQREAQTKKIERANRLLYEQTDRMKTLRSKQLLADVVHHRTLQFEDKRMLKDQDDLTNYYYDQQVVAQVIEGEAEEQRQRKKRLVENARLAAIQKQQLEEYKQRYINELREEKREGELMKQQAEQEYLDEKEKDRQRKLRLKQASEDTQLANQRL 235          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A397DPQ0_9STRA (TPH domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DPQ0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.060e-26
Identity = 96/245 (39.18%), Postives = 146/245 (59.59%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTAR---DQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEM--EKMLAANQDLHQRRAERISEEMA 720
            ++ELDRIR  ++   +++ +A+R+HLK LS +R   WPNTLEA R+ KENWKK +E+  EA+R  +D+EE  LQ++ R + I+RAN  LYEQT +MK LRS  L A+V++ R+ QI EK   +   Q +   +   ++   AQ   A+K   D R  + R        QQ+QL E++ S+IA+L +   DG+  +  AKA  +A +EE+  L  K R +   E M  AN+ L+  R +   +E+A
Sbjct:    7 ESELDRIRQSISDPVQSNHEAKRQHLKELSTQRTGKWPNTLEAMRRKKENWKKDKEEREEAERLKIDEEELRLQKEYRTKQIERANRLLYEQTDRMKTLRSKELLADVLQDREYQIGEKNAFKAMDQKVEDGWTGVLM---AQLRDADKKADDERKVRERKHKELVVMQQKQLEEYKNSHIATLREEMRDGERIK--AKAEQDARDEEETELARKRRVKQANEDMRLANERLNLLRKQEAEKEVA 246          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: D0NNB5_PHYIT (TPH domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0NNB5_PHYIT)

HSP 1 Score: 115 bits (288), Expect = 6.880e-26
Identity = 85/225 (37.78%), Postives = 133/225 (59.11%), Query Frame = 1
Query:    7 ELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIEAEEEEKRALKLKNRAEMEKMLAANQDL 681
            EL+R+RA V+   ++D +ARR+ +K+ S++R + WPNTLEA R  K+ WKK +E+ +E   + +D+EE  LQR+ + + I+RAN  LYEQT +MK LRS  L A+VV  R  Q+ +K   +         Y Q+V+ +V +GEA E+     R  +    A  Q+QQL E++  YI+ L + K +G+  ++ A+     E+E+ R  KL+ +   E    ANQ L
Sbjct:   11 ELERMRASVSPPAQSDREARRQAIKLKSEQRTAKWPNTLEALRMKKDRWKKDKEERLEEXXQKIDEEEMRLQREAQTKQIERANWLLYEQTDRMKTLRSKQLLADVVHHRTLQLEDKRMLKDQDDLTNYHYDQQVVAQVIEGEAEEQRQRKKRLEENARLAAIQKQQLEEYKQRYISELREEKREGELMKQQAEQEYLDEKEKDRQRKLRLKQASEDTQLANQRL 235          
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Match: A0A1V9Z7K3_9STRA (TPH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7K3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.610e-25
Identity = 96/244 (39.34%), Postives = 139/244 (56.97%), Query Frame = 1
Query:    1 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKENWKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLRSNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKATADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKA----AIEAEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMA 720
            +A+L RIR+ V++   T+ +A+R  L+ LS  R + WPNTLEA R+ KENWKK +E+  E +RR +D EEA LQ++ R   I+RAN  LYEQT KMK LRS  L  +V+  R+ QIAEK   +   Q +   +     +++A   A + A    R AK    A  Q+ QL E++ ++IASL + K DG+  +  A+      +EAE + KR  K  N    E    AN+ L   RA+  + E+A
Sbjct:    7 EADLARIRSNVSEPEVTNREAKRAALRELSQARTNKWPNTLEAMRRKKENWKKDKEEREEDERRKIDLEEARLQKEARTRQIERANRLLYEQTDKMKTLRSKELLNDVLADREFQIAEKHALKAMDQRVEEGWTALERQQLADANAKQAAEDARRHAKFLELAAIQKTQLEEYKNNFIASLREEKTDGERIKAKAEQDLRDELEAEADRKRRTKQAN----EDTRLANERLKALRAQEKAAELA 246          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12954.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR2_ECTSI5.410e-15595.13TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KEN4_9PHAE3.050e-13386.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XWQ0_HETAK1.950e-4140.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YVV5_9STRA7.410e-4141.57TPH domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A5D6Y2N9_9STRA1.640e-3340.25TPH domain-containing protein n=1 Tax=Pythium bras... [more]
W4GU32_9STRA1.420e-2738.02TPH domain-containing protein n=9 Tax=Aphanomyces ... [more]
A0A833S2A7_PHYIN2.630e-2638.22Trichohyalin-plectin-homology domain-containing pr... [more]
A0A397DPQ0_9STRA3.060e-2639.18TPH domain-containing protein n=10 Tax=Aphanomyces... [more]
D0NNB5_PHYIT6.880e-2637.78TPH domain-containing protein n=13 Tax=Phytophthor... [more]
A0A1V9Z7K3_9STRA4.610e-2539.34TPH domain-containing protein n=1 Tax=Achlya hypog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12954contigEcto-sp13_S_contig12954:3..4209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score452.6
Seed ortholog evalue1.3e-124
Seed eggNOG ortholog2880.D7FIR2
Model size801
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Trichohyalin-plectin-homology domain
EggNOG OGs2CIRV@1,2QWHX@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003260.1
Cds size801
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12954.2426.1prot_Ecto-sp13_S_contig12954.2426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12954 3..4209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.9506564-CDS-Ecto-sp13_S_contig12954:2..831681462692.9506564-CDS-Ecto-sp13_S_contig12954:2..83Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 3..83 -
1681462692.963242-CDS-Ecto-sp13_S_contig12954:687..8191681462692.963242-CDS-Ecto-sp13_S_contig12954:687..819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 688..819 -
1681462692.9763286-CDS-Ecto-sp13_S_contig12954:975..10411681462692.9763286-CDS-Ecto-sp13_S_contig12954:975..1041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 976..1041 -
1681462692.9875343-CDS-Ecto-sp13_S_contig12954:1539..16411681462692.9875343-CDS-Ecto-sp13_S_contig12954:1539..1641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 1540..1641 -
1681462692.997937-CDS-Ecto-sp13_S_contig12954:2292..23821681462692.997937-CDS-Ecto-sp13_S_contig12954:2292..2382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 2293..2382 -
1681462693.0078561-CDS-Ecto-sp13_S_contig12954:3080..32661681462693.0078561-CDS-Ecto-sp13_S_contig12954:3080..3266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 3081..3266 -
1681462693.0195682-CDS-Ecto-sp13_S_contig12954:4065..42091681462693.0195682-CDS-Ecto-sp13_S_contig12954:4065..4209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12954 4066..4209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12954.2426.1

>prot_Ecto-sp13_S_contig12954.2426.1 ID=prot_Ecto-sp13_S_contig12954.2426.1|Name=mRNA_Ecto-sp13_S_contig12954.2426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNKEN
WKKKQEDLVEAKRRDVDKEEALLQRQMRAETIKRANDKLYEQTGKMKLLR
SNLLYAEVVETRKEQIAEKAERQTDAQTLAAAYHQEVIRKVAQGEAAEKA
TADARAAKARTTARDQQQQLREFQTSYIASLVKVKEDGDETQRAAKAAIE
AEEEEKRALKLKNRAEMEKMLAANQDLHQRRAERISEEMAHMEKCRQQRD
VLDRAARARKSLEAKRF
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mRNA from alignment at Ecto-sp13_S_contig12954:3..4209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12954.2426.1 ID=mRNA_Ecto-sp13_S_contig12954.2426.1|Name=mRNA_Ecto-sp13_S_contig12954.2426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12954:3..4209- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGAACTTGATCGCATACGAGCCAAGGTCACCAAGACCCCCGAGAC AGATGCTGATGCCCGTCGCCGACATCTCAAGGTGCTCTCTGACGAGCGCG TGAGCCACTGGCCCAACACCCTCGAAGCGCAGCGACAGAACAAGGTGAAT CTTCGGAAAGCAATCAAGGCGTGAAGCACGGATTGATTTGATCCTTTTGC ATTGCACAACGGCACAGAACGGGAAACGCCCGCACCGTGTGTAGTTCCTC TACATAGTTTTGGGTGGGGTTCTTAGCCGAGCTCACGAATGGTGCACAAG TTGTGAGATTTTGATTTCCTTTTGGACAAATCATTTTCCGATCTCATGAT CAACACGTAGTAGATGTCAATGCACTATTTACAATCTAATTGAGATACTT GTAATTGGATGAGGTGGTTTCCGCCTGGCAAAGTGTCACGAAGAGGATGA GATGACATTCCCCGTGTGCTGGTACGGCTCACAGGATGGGAAGCCTTTGG CGTTGTGGCACGGCTTTGAATCCCTGTGCAATCACACAAAGGGCTTCGTT CTCGCTCTATCCCCAACACTTGACTGGTCCCTGAATATACCTATTGATAA TCAATCGACCTCGTGGCCGGTGAGAGATAGGAACAGAGATGGCTGAATAC TTCCCGCAATGGTCGTGTGAGGCAAGCTCCGCCAAAGAACGGTGGAGAAA AGATCGCAAGGGTAGGAGTGGTGGGAGACACCGGAACACCCAAACACGAA ACAATATTTCATACGGGTTATCTGTGTCGTGCTCGACGAGTGAACCAAAC GCATTCAATCGCCGCGTGAATCTTCAATAGCGTCTCTGCACACCTTGCAC GGCGGCCCTTAAGCAAGGCGGTGCATGCCACTTCGAAGCGGTCTTGACGG CGTCTCTGACGAAGAAGTTTTACTCCTGACATTGGCCTCTCAGGAGAATT GGAAGAAAAAGCAAGAGGATCTGGTGGAGGCAAAACGAAGGGATGTGGAC AAGGAGGAGGCTCTCCTGCAGCGCCAGATGAGAGCCGAGACGATCAAGAG GGCCAACGACAAGCTGTACGAGCAGACGGGAAAGATGAAGCTACTGAGAA GCAACTTACTCTACGCCGAGGTTGTTGAGGTACGAAGCTCCAAATGAGAT ATATCACACTTTCGGGTGCGGGCACGTCTTTCACTCGACAACCCCCCCCC CCCCCCAACCAATGGACTCACACGTACAGATGATGACCGGCTTCTGATTT ATCGTCGTGAAACGTAGCCTGGGCAGGCGAAACCCCCGCATATCGCTCCG TCCCCGCGATGTAGGGGTGCGAAGTCAATGGTCTAACGACTACGACATGT TTATTGATGAGTACCACGCCTCCTCGGACCAAAGGACTCCAATCGACGGT TGTGTCGTCTGTCTTCCCGCGGGGGGATCGAAGTATGGCAGATTCTCCTT CGAACGACGTGCTCTGAATCTGTAACAACTCGCACTTGTTGACGGCGGCA AGCCCGAGAGCAACGATGGGGGTTCGGACAAAGAGAGGGCTCTTGTTTTG CCGAGATTCATTCCCATCGCCTCTGGTACGCGGGGGGCCAACCAACTTCG ACACGGATGTTTTTGCAGGGATCAATGCAGCGCGGGTCAACAGCGTACAT TCAACGGAGCAATACCATCCTACAACTCATTGATGCTGTGTGCGATATGT CCCTGGCTGGCCACGTGCATGTCGATTCCCCTACAGGAGGGCCATATTGG TAGTGCTTCATGAACGGAGCAGAACTCATGCGTGTTTGTTGTGTGCGGCC ATTACCTTCGACCTGGCCCCCGCGCAGACACGAAAGGAGCAGATCGCCGA GAAGGCAGAGCGGCAAACGGACGCGCAAACCCTGGCCGCGGCTTACCATC AAGAGGTTATCCGAAAGGTGTGGTGACTATGACACAGAGATGATACGACA CACGATGTATGAGGATGAGAAGTAGAGGGTGGATCAGACTTGTCCAAAAC CATTGCGTGTATCTGTAGATGTGGTACTATCGTGCGCAGGCGATGGGGTA GAACTCGTTTGATAGTGCGCGAGCGAATGATGGTTTTGGTATGGGTGTAT CGGCTTGTTCAGATGATGTTAAGGACCAGGCGAAAGCGCGGAATCAGCAT CCACTCTGAAAAGGCGATGAAAAAAGACTGCCTGACAAGCCCGACTGTGA TGACAGGGGGGGGTGACGGATGGTTTACGCGGTGCAAAACAAGACGCAAT GCGAAAGGTTCGGGGGCCAGCACGCAGCCATTGTGGTTACTATCAAAGCG ACACAAAAGATGCATTGAGTGTGATGATTTGAACGGAGTACGGCGGGAAA AACAGCCGGAAAATAACCGAGCCACACGGGGTGACACTGTTCCTTTTCCG TGGTATTCCGCTGGGAGAGTATATATTTCCTAAACCTCTTACCACAGCCC AGATCCCAAACCTCTTACCACAACCCAGAGCATTGGCCTGTCGGTGAGGC TGCGGCGTAAGCTTCTCATTTTTCGTGTCACGCGTCACGTGTGGCTCTCG GGAAACAAAACGAAACAGGTCGCCCAGGGAGAAGCAGCGGAAAAGGCCAC TGCTGACGCCCGTGCTGCGAAGGCGAGGACGACGGCCAGGGACCAGCAGC AACAACTGCGCGAGTTCCAAGTACGCTGCCGAACGCCTCGTAGGATGTGC TGGTAGTGTACCTACGAGTTTGTACCTTCAGTAGGGTCGGGGTATTGCTG TTGAAACGTGCGCTTGTTGGTGGCACTTGTGGCATTGCGAGAGGTGTTGC TCTCAATGCAGGGTTTCGGCGGACCTTCCAGCACTTCCGTATTCCGGACG CTTCCAAGGCATATGGTACGAATATAGGGTGGGGTGCAGTCATCGGGAAG CGCGATTGGCGTTACCGAGATCCAGCCAGGAAAGGAAGGAGAACACCTCA ATGAACGGCCGGCGTTGTTGTTGTTGTTGATGTTGATATCTTGACATGAA TACACCGTACCGGTTTATGCTCAGTACCTTCTACTATCGAACGCCTCTCA GAAACGACACTTGTGTTCTAGTCTTGTTCCGTTCCGACTCCATTACTAGC CTCTGTTGTGCCCACCAATCTCATGTTCGACATATGAACATTGTTGTCGC TTGTTTTTCTTTCGCCAGACGTCTTACATCGCGAGCTTGGTCAAGGTGAA GGAGGACGGAGACGAGACGCAGAGGGCGGCCAAGGTGAGTCGTGCGACGA AGAGCATCTTGTTCTGTTGTTGTTGTTGTTGTTGCTGTCCTCCGTAATCG TGTCATCGTCGTCGTCGTCGTTGTCGTCATCGTCGTGGATGTCGCTGTTA TGGTTGTCAACGATTGGTTCTGCCTGTTGTGGGTGTTCAGGCCGCCATCG AAGCGGAAGAGGAGGAGAAGAGGGCCCTCAAGCTCAAGAACCGCGCGGAG ATGGAGAAGATGCTCGCGGCGAACCAGGACCTGCACCAAAGGAGAGCCGA GCGAATATCGGAAGAGATGGCGGTGAGCCCATGACTCACACAAGCAAGGG AGAAGATACCCCTCGAGCACACAACAACTCGTCTGGCAAGGAGCGGTACG CGTAGAGTTGCCGGGAAGACGTATCAATTGTAGCCGTCATGTTCTTCAAG ACGAGTACCTTGGAGGCCGCTCGAGCAACGTGCTTCGGAGAGTGAGCGCT GTGCTCCTATTTACTACTGCGTTCCATATTGAGCCCACTCGACGAAATAA CTGCGTTCGCGATGCCGCTTTTTCGGAGAGTAGTGGGCCGCCCAGGTGGG CGACAAGCACACTAGGCTTTGCTCTGGGTACGGCAGCACGAATTTTTCGC TGGATGTGTATGTATCGGCTGAGGGTATTGAGGGCAGAAGCTGACACGGG TGTCTTCGCATTTTTTTCGGGTCGGAATGAACATGGCTGGTCACACTTCC AGTGGAACCCGAGGTCCCATTCGCGGAACCGTGTTGGTTTCAGATGAGGT CGATACAGGTATATATTTTCTCATCTGTCCGTGTGTTTGGAGGCCATTGC CTCCGGTAACAAGGCAAGCGATTGAAGCGCCTACCTGCTCTGCTTGACCT TTGCAAAACGTTCGGGTGTAACGTAGCACATGGAGAAGTGCCGGCAGCAG CGGGACGTGCTGGACAGGGCGGCGAGGGCTAGGAAGAGCCTGGAAGCCAA GCGGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12954:3..4209-

>mRNA_Ecto-sp13_S_contig12954.2426.1 ID=mRNA_Ecto-sp13_S_contig12954.2426.1|Name=mRNA_Ecto-sp13_S_contig12954.2426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12954:3..4209- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGAACTTGATCGCATACGAGCCAAGGTCACCAAGACCCCCGAGAC
AGATGCTGATGCCCGTCGCCGACATCTCAAGGTGCTCTCTGACGAGCGCG
TGAGCCACTGGCCCAACACCCTCGAAGCGCAGCGACAGAACAAGGAGAAT
TGGAAGAAAAAGCAAGAGGATCTGGTGGAGGCAAAACGAAGGGATGTGGA
CAAGGAGGAGGCTCTCCTGCAGCGCCAGATGAGAGCCGAGACGATCAAGA
GGGCCAACGACAAGCTGTACGAGCAGACGGGAAAGATGAAGCTACTGAGA
AGCAACTTACTCTACGCCGAGGTTGTTGAGACACGAAAGGAGCAGATCGC
CGAGAAGGCAGAGCGGCAAACGGACGCGCAAACCCTGGCCGCGGCTTACC
ATCAAGAGGTTATCCGAAAGGTCGCCCAGGGAGAAGCAGCGGAAAAGGCC
ACTGCTGACGCCCGTGCTGCGAAGGCGAGGACGACGGCCAGGGACCAGCA
GCAACAACTGCGCGAGTTCCAAACGTCTTACATCGCGAGCTTGGTCAAGG
TGAAGGAGGACGGAGACGAGACGCAGAGGGCGGCCAAGGCCGCCATCGAA
GCGGAAGAGGAGGAGAAGAGGGCCCTCAAGCTCAAGAACCGCGCGGAGAT
GGAGAAGATGCTCGCGGCGAACCAGGACCTGCACCAAAGGAGAGCCGAGC
GAATATCGGAAGAGATGGCGCACATGGAGAAGTGCCGGCAGCAGCGGGAC
GTGCTGGACAGGGCGGCGAGGGCTAGGAAGAGCCTGGAAGCCAAGCGGTT
C
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